Clone BS11249 Report

Search the DGRC for BS11249

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG4789-RA
Protein status:BS11249.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11249.3prime Sequence

856 bp (776 high quality bases) assembled on 2006-04-18

> BS11249.3prime
ATGGTCTAGAAAGCTTTCACTTGAGGTCTTGGGTATCCAGGAGGGGCAAG
ACGCTGTCTTCCATTTTGGCACTGGTCGGGCCAAAACGTCGCCTGTCGGG
CGGACTGACGGCGTTGGAGCTGCTCACTCCGAATGCTAGGGCTGCGCGCA
GCGCTTTGCGATTTTCGATAACGCGGTCAAAGAAGCGGGACAGTTTCACG
GCATCAGTGGTACCAGCGGCCAGGCTGCGACTGTTGCGGCAATTTAGCCA
AATCTCCTCGGCTCCACACTTGTCGGCTATTCCGCCCGGCTTCTTCACCC
CCATTTTGGGATGGCGCTTCTCGTCCAAGAGATCCAGCTTGGTGCCCATG
ACCAGGATAGGCGTTTGCGTGGCGCCCAGAAACTCCTCCATGTCGAAGAG
AATGTGGCCGTCCGTTCCGAGGTTGTCCGTTGAGAAGCTGCTCAGCGGGC
TGGGCGGCGATGGCGGCATGGAGGCTCCGTTCGATTTGTTCGTATCCTTG
CCCTCCTTGTTGACGATCTCGTACAGCCAGTCGATTAGCTGCCTCTGCGA
CTTGGCGTTGGTAAGGTCGTGCACCAGAATGATTCCATCGATGCCCGCAT
AGAAGACGCTGCGCGTGTTCTTGTGGTTCAGCGATCCCCCAACATCGAAC
AGCTCCACGAAGTAGGGACACTCGCGAGCGGTGCCCTCCCTGAACGGATG
CATCTTCACCTGGATGTTGCAGCCCACCGTCCAGCCGGGCCGGATGAGGG
CTTCGTTGTGGGTGATCAGGTGCGTCAGGGAGGTCTTCCCCACACCCGAA
TCGCCAACCACAACAATTCGCACTCGATTATTCATCGCCATGCCGACTGA
TAACTT

BS11249.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 825 CG4789-RA 1..825 841..17 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 942 CG4789-RA 31..855 841..17 4125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 796..277 2600 100 Minus
X 23542271 X 16801652..16801913 278..17 1310 100 Minus
X 23542271 X 16800960..16801007 841..794 240 100 Minus
Blast to na_te.dros performed on 2015-01-31 20:20:29 has no hits.

BS11249.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:12 Download gff for BS11249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..825 17..841 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:51 Download gff for BS11249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..825 17..841 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:39:02 Download gff for BS11249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 47..880 12..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:51:50 Download gff for BS11249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 24..857 12..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:51:50 Download gff for BS11249.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16800953..16801005 796..849 92 -> Minus
X 16801069..16801587 277..795 100 -> Minus
X 16801654..16801915 12..276 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:39:02 Download gff for BS11249.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16694986..16695038 796..849 92 -> Minus
arm_X 16695102..16695620 277..795 100 -> Minus
arm_X 16695687..16695948 12..276 98   Minus

BS11249.5prime Sequence

834 bp (775 high quality bases) assembled on 2006-04-18

> BS11249.5prime
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCCACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATACCCAAGACCT

BS11249.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 825 CG4789-RA 1..818 17..834 4065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 942 CG4789-RA 31..848 17..834 4075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 62..581 2600 100 Plus
X 23542271 X 16801652..16801906 580..834 1260 99.6 Plus
X 23542271 X 16800960..16801007 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:44:36 has no hits.

BS11249.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:13 Download gff for BS11249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..818 17..834 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:52 Download gff for BS11249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..818 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:35:59 Download gff for BS11249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 42..871 3..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:55 Download gff for BS11249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 19..848 3..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:55 Download gff for BS11249.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16800948..16801005 3..62 91 -> Plus
X 16801069..16801587 63..581 100 -> Plus
X 16801654..16801906 582..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:35:59 Download gff for BS11249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16694981..16695038 3..62 91 -> Plus
arm_X 16695102..16695620 63..581 100 -> Plus
arm_X 16695687..16695939 582..834 99   Plus

BS11249.complete Sequence

857 bp assembled on 2006-11-01

GenBank Submission: FJ636796

> BS11249.complete
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATACCCAAGACCTCAAGTGAAAGCTTTCT
AGACCAT

BS11249.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 825 CG4789-PA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 942 CG4789-RA 31..855 17..841 4125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 62..581 2600 100 Plus
X 23542271 X 16801652..16801913 580..841 1310 100 Plus
X 23542271 X 16800960..16801007 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:39:39 has no hits.

BS11249.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:05 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:24 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..833 10..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:47 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 54..877 17..840 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:05 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..833 10..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:05 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 31..854 17..840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:05 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
X 16801654..16801912 582..840 100   Plus
X 16800960..16801005 17..62 100 -> Plus
X 16801069..16801587 63..581 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:47 Download gff for BS11249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16695687..16695945 582..840 100   Plus
arm_X 16694993..16695038 17..62 100 -> Plus
arm_X 16695102..16695620 63..581 100 -> Plus

BS11249.pep Sequence

Translation from 16 to 840

> BS11249.pep
MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF
REGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKSQR
QLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHILFD
MEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLN
CRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPPDR
RRFGPTSAKMEDSVLPLLDTQDLK*

BS11249.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 274 CG4789-PA 1..274 1..274 1430 100 Plus