Clone Sequence Records
BS11249.3prime Sequence
856 bp (776 high quality bases) assembled on 2006-04-18
> BS11249.3prime
ATGGTCTAGAAAGCTTTCACTTGAGGTCTTGGGTATCCAGGAGGGGCAAG
ACGCTGTCTTCCATTTTGGCACTGGTCGGGCCAAAACGTCGCCTGTCGGG
CGGACTGACGGCGTTGGAGCTGCTCACTCCGAATGCTAGGGCTGCGCGCA
GCGCTTTGCGATTTTCGATAACGCGGTCAAAGAAGCGGGACAGTTTCACG
GCATCAGTGGTACCAGCGGCCAGGCTGCGACTGTTGCGGCAATTTAGCCA
AATCTCCTCGGCTCCACACTTGTCGGCTATTCCGCCCGGCTTCTTCACCC
CCATTTTGGGATGGCGCTTCTCGTCCAAGAGATCCAGCTTGGTGCCCATG
ACCAGGATAGGCGTTTGCGTGGCGCCCAGAAACTCCTCCATGTCGAAGAG
AATGTGGCCGTCCGTTCCGAGGTTGTCCGTTGAGAAGCTGCTCAGCGGGC
TGGGCGGCGATGGCGGCATGGAGGCTCCGTTCGATTTGTTCGTATCCTTG
CCCTCCTTGTTGACGATCTCGTACAGCCAGTCGATTAGCTGCCTCTGCGA
CTTGGCGTTGGTAAGGTCGTGCACCAGAATGATTCCATCGATGCCCGCAT
AGAAGACGCTGCGCGTGTTCTTGTGGTTCAGCGATCCCCCAACATCGAAC
AGCTCCACGAAGTAGGGACACTCGCGAGCGGTGCCCTCCCTGAACGGATG
CATCTTCACCTGGATGTTGCAGCCCACCGTCCAGCCGGGCCGGATGAGGG
CTTCGTTGTGGGTGATCAGGTGCGTCAGGGAGGTCTTCCCCACACCCGAA
TCGCCAACCACAACAATTCGCACTCGATTATTCATCGCCATGCCGACTGA
TAACTT
BS11249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-PA | 825 | CG4789-RA | 1..825 | 841..17 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 942 | CG4789-RA | 31..855 | 841..17 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16801068..16801587 | 796..277 | 2600 | 100 | Minus |
X | 23542271 | X | 16801652..16801913 | 278..17 | 1310 | 100 | Minus |
X | 23542271 | X | 16800960..16801007 | 841..794 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:20:29 has no hits.
BS11249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:12 Download gff for
BS11249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..825 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:51 Download gff for
BS11249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..825 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:39:02 Download gff for
BS11249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 47..880 | 12..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:51:50 Download gff for
BS11249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 24..857 | 12..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:51:50 Download gff for
BS11249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16800953..16801005 | 796..849 | 92 | -> | Minus |
X | 16801069..16801587 | 277..795 | 100 | -> | Minus |
X | 16801654..16801915 | 12..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:39:02 Download gff for
BS11249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16694986..16695038 | 796..849 | 92 | -> | Minus |
arm_X | 16695102..16695620 | 277..795 | 100 | -> | Minus |
arm_X | 16695687..16695948 | 12..276 | 98 | | Minus |
BS11249.5prime Sequence
834 bp (775 high quality bases) assembled on 2006-04-18
> BS11249.5prime
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCCACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATACCCAAGACCT
BS11249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-PA | 825 | CG4789-RA | 1..818 | 17..834 | 4065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 942 | CG4789-RA | 31..848 | 17..834 | 4075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16801068..16801587 | 62..581 | 2600 | 100 | Plus |
X | 23542271 | X | 16801652..16801906 | 580..834 | 1260 | 99.6 | Plus |
X | 23542271 | X | 16800960..16801007 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:44:36 has no hits.
BS11249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:13 Download gff for
BS11249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:52 Download gff for
BS11249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:35:59 Download gff for
BS11249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 42..871 | 3..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:55 Download gff for
BS11249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 19..848 | 3..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:55 Download gff for
BS11249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16800948..16801005 | 3..62 | 91 | -> | Plus |
X | 16801069..16801587 | 63..581 | 100 | -> | Plus |
X | 16801654..16801906 | 582..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:35:59 Download gff for
BS11249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16694981..16695038 | 3..62 | 91 | -> | Plus |
arm_X | 16695102..16695620 | 63..581 | 100 | -> | Plus |
arm_X | 16695687..16695939 | 582..834 | 99 | | Plus |
BS11249.complete Sequence
857 bp assembled on 2006-11-01
GenBank Submission: FJ636796
> BS11249.complete
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATACCCAAGACCTCAAGTGAAAGCTTTCT
AGACCAT
BS11249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 825 | CG4789-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 942 | CG4789-RA | 31..855 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16801068..16801587 | 62..581 | 2600 | 100 | Plus |
X | 23542271 | X | 16801652..16801913 | 580..841 | 1310 | 100 | Plus |
X | 23542271 | X | 16800960..16801007 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:39:39 has no hits.
BS11249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:05 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:24 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 1..833 | 10..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:47 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 54..877 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:05 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 1..833 | 10..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:05 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 31..854 | 17..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:05 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16801654..16801912 | 582..840 | 100 | | Plus |
X | 16800960..16801005 | 17..62 | 100 | -> | Plus |
X | 16801069..16801587 | 63..581 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:47 Download gff for
BS11249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16695687..16695945 | 582..840 | 100 | | Plus |
arm_X | 16694993..16695038 | 17..62 | 100 | -> | Plus |
arm_X | 16695102..16695620 | 63..581 | 100 | -> | Plus |
BS11249.pep Sequence
Translation from 16 to 840
> BS11249.pep
MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF
REGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKSQR
QLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHILFD
MEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLN
CRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPPDR
RRFGPTSAKMEDSVLPLLDTQDLK*
BS11249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-PA | 274 | CG4789-PA | 1..274 | 1..274 | 1430 | 100 | Plus |