Clone BS11255 Report

Search the DGRC for BS11255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG9018-RB
Protein status:BS11255.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11255.3prime Sequence

915 bp (857 high quality bases) assembled on 2006-04-18

> BS11255.3prime
ATGGTCTAGAAAGCTTTTATCTAACAACCCCAAGGACCATGCATTGCCTA
GACCATGAAGAACGTACATCGAGGCGTTGCTCAGCCTGGGAGAGAAGTTC
CTTCTGCTCCGCTTGAAAATCTCGCAGCATGGTCGCCAACTTGGAGCGCT
CCTCCATCTCCGCCGCCAACCGAGCATTGTAGTCGTTCAGCAGATCCACA
GCTTCGTTCACCTGTATGGCCAGTTCCTTGGCCTTGTCCTTATCCTCCAG
CTTGCTGATGCAGCTAATCTCGGATATTTCCTGGGGCAGCTTGGCGATAC
GTTCGCGCACCACAGCATCGCTGGATGCGGAGTTTTCGATGCTGGTCAGG
GCCCTGATGAGCTCCTCGGGCTCCGGTGGCTCTCCCAAAGGCAAGTAGGG
TGGCGTGTGGCCGTTCTCGGGTTCCACAGAAACTACTTCCTCCGTCGGAG
GAGCTGAGTTCGCGCTGCTGCCTTGGACGTGATGGCGCGAGCGCTTGGAC
TTAGAGTGGCGATCCTCGTGCTTGCGCTTCTCGCGGCGCTCGGATTTCTC
GGGCTTGCCGCTGCCGCCGTGATCCTTCTCCTTCTCGGGCTTCTCACTAT
CGCCATTGGTCTTGCCATTGCTGCTGGAGCTGCTGCCAGGAGCCTCCTTG
TGTAATCGCGACCTCCAGTCGGCAATGGTCTTGGGATCGTAGACGCCCCG
CTCCAGCCAGATGTTTAGGATCCTTCCCAGGCTGCCCAGCAACTTGTCCG
AGTTGCACTTCTCGCCAATGTGGGCGAACACCTTGCCCAGCACAAGGCTG
TACTCCTTGCCGTACTCCGGGCCCTTCTTCTTGCTGTTCTGGATCACGTC
GTTGGCCAGGTACATGAAGGTCAGCTTCTTAGGCTCCGGCACGTTCTCCA
GCTCCCGCTGCCAGG

BS11255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-PB 1026 CG9018-RB 128..1026 915..17 4495 100 Minus
CG9018-PA 1128 CG9018-RA 128..976 915..67 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-RB 1283 CG9018-RB 253..1152 915..16 4500 100 Minus
CG9018-RA 1395 CG9018-RA 253..1101 915..67 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2236047..2236730 209..892 3420 100 Plus
3L 28110227 3L 2235777..2235974 16..213 990 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:26:27 has no hits.

BS11255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:25 Download gff for BS11255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-PB 128..1026 17..915 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:07 Download gff for BS11255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-PB 128..1026 17..915 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:19 Download gff for BS11255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 253..1152 16..915 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:34 Download gff for BS11255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 253..1152 16..915 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:34 Download gff for BS11255.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2235777..2235972 16..211 100 <- Plus
3L 2236050..2236729 212..891 100 <- Plus
3L 2236801..2236824 892..915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:19 Download gff for BS11255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2235777..2235972 16..211 100 <- Plus
arm_3L 2236050..2236729 212..891 100 <- Plus
arm_3L 2236801..2236824 892..915 100   Plus

BS11255.5prime Sequence

884 bp (812 high quality bases) assembled on 2006-04-18

> BS11255.5prime
GAAGTTATCAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGA
AGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTG
TGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCA
GCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACC
TGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGC
AAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAA
GTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCT
GGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCG
CGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGAC
CAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCG
GCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGC
CACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAA
CTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCC
ACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTC
ATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGT
GCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCA
TCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATACAGGTG
AACGAAGCTGTGGATCTGCTGAACGACTACNATG

BS11255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-PB 1026 CG9018-RB 1..868 17..884 4321 99.8 Plus
CG9018-PA 1128 CG9018-RA 1..868 17..884 4321 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-RA 1395 CG9018-RA 125..993 16..884 4334 99.9 Plus
CG9018-RB 1283 CG9018-RB 125..993 16..884 4334 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2236047..2236730 850..167 3420 100 Minus
3L 28110227 3L 2236801..2236952 167..16 760 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:20:08 has no hits.

BS11255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:26 Download gff for BS11255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-PB 1..868 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:09 Download gff for BS11255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:09 Download gff for BS11255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 118..993 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:55 Download gff for BS11255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 118..993 9..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:55 Download gff for BS11255.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2235936..2235972 848..884 97 <- Minus
3L 2236050..2236729 168..847 100 <- Minus
3L 2236801..2236956 9..167 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:09 Download gff for BS11255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2235936..2235972 848..884 97 <- Minus
arm_3L 2236050..2236729 168..847 100 <- Minus
arm_3L 2236801..2236956 9..167 98   Minus

BS11255.complete Sequence

1058 bp assembled on 2006-11-01

GenBank Submission: FJ636797

> BS11255.complete
GAAGTTATCAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGA
AGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTG
TGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCA
GCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACC
TGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGC
AAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAA
GTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCT
GGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCG
CGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGAC
CAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCG
GCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGC
CACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAA
CTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCC
ACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTC
ATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGT
GCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCA
TCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATACAGGTG
AACGAAGCTGTGGATCTGCTGAACGACTACAATGCTCGGTTGGCGGCGGA
GATGGAGGAGCGCTCCAAGTTGGCGACCATGCTGCGAGATTTTCAAGCGG
AGCAGAAGGAACTTCTCTCCCAGGCTGAGCAACGCCTCGATGTACGTTCT
TCATGGTCTAGGCAATGCATGGTCCTTGGGGTTGTTAGATAAAAGCTTTC
TAGACCAT

BS11255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-RB 1026 CG9018-PB 1..1026 17..1042 5130 100 Plus
CG9018-RA 1128 CG9018-PA 1..976 17..992 4880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-RB 1283 CG9018-RB 125..1152 16..1043 5140 100 Plus
CG9018-RA 1395 CG9018-RA 125..1101 16..992 4885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2236047..2236730 850..167 3420 100 Minus
3L 28110227 3L 2235777..2235974 1043..846 990 100 Minus
3L 28110227 3L 2236801..2236952 167..16 760 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:56:40 has no hits.

BS11255.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:06 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:26 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 114..1148 9..1043 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:46 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 126..1149 17..1040 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:06 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 114..1148 9..1043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:42 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 126..1149 17..1040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:42 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2235780..2235972 848..1040 100 <- Minus
3L 2236050..2236729 168..847 100 <- Minus
3L 2236801..2236951 17..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:46 Download gff for BS11255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2235780..2235972 848..1040 100 <- Minus
arm_3L 2236050..2236729 168..847 100 <- Minus
arm_3L 2236801..2236951 17..167 100   Minus

BS11255.pep Sequence

Translation from 16 to 1041

> BS11255.pep
MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN
VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK
LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE
KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT
EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA
KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS
KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVR*

BS11255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-PB 341 CG9018-PB 1..341 1..341 1746 100 Plus
CG9018-PA 375 CG9018-PA 1..325 1..325 1663 100 Plus
CG15160-PB 818 CG15160-PB 5..135 4..138 172 29.6 Plus
CG15160-PA 822 CG15160-PA 5..135 4..138 172 29.6 Plus
CG15160-PC 834 CG15160-PC 5..135 4..138 172 29.6 Plus