Clone Sequence Records
BS11255.3prime Sequence
915 bp (857 high quality bases) assembled on 2006-04-18
> BS11255.3prime
ATGGTCTAGAAAGCTTTTATCTAACAACCCCAAGGACCATGCATTGCCTA
GACCATGAAGAACGTACATCGAGGCGTTGCTCAGCCTGGGAGAGAAGTTC
CTTCTGCTCCGCTTGAAAATCTCGCAGCATGGTCGCCAACTTGGAGCGCT
CCTCCATCTCCGCCGCCAACCGAGCATTGTAGTCGTTCAGCAGATCCACA
GCTTCGTTCACCTGTATGGCCAGTTCCTTGGCCTTGTCCTTATCCTCCAG
CTTGCTGATGCAGCTAATCTCGGATATTTCCTGGGGCAGCTTGGCGATAC
GTTCGCGCACCACAGCATCGCTGGATGCGGAGTTTTCGATGCTGGTCAGG
GCCCTGATGAGCTCCTCGGGCTCCGGTGGCTCTCCCAAAGGCAAGTAGGG
TGGCGTGTGGCCGTTCTCGGGTTCCACAGAAACTACTTCCTCCGTCGGAG
GAGCTGAGTTCGCGCTGCTGCCTTGGACGTGATGGCGCGAGCGCTTGGAC
TTAGAGTGGCGATCCTCGTGCTTGCGCTTCTCGCGGCGCTCGGATTTCTC
GGGCTTGCCGCTGCCGCCGTGATCCTTCTCCTTCTCGGGCTTCTCACTAT
CGCCATTGGTCTTGCCATTGCTGCTGGAGCTGCTGCCAGGAGCCTCCTTG
TGTAATCGCGACCTCCAGTCGGCAATGGTCTTGGGATCGTAGACGCCCCG
CTCCAGCCAGATGTTTAGGATCCTTCCCAGGCTGCCCAGCAACTTGTCCG
AGTTGCACTTCTCGCCAATGTGGGCGAACACCTTGCCCAGCACAAGGCTG
TACTCCTTGCCGTACTCCGGGCCCTTCTTCTTGCTGTTCTGGATCACGTC
GTTGGCCAGGTACATGAAGGTCAGCTTCTTAGGCTCCGGCACGTTCTCCA
GCTCCCGCTGCCAGG
BS11255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-PB | 1026 | CG9018-RB | 128..1026 | 915..17 | 4495 | 100 | Minus |
CG9018-PA | 1128 | CG9018-RA | 128..976 | 915..67 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RB | 1283 | CG9018-RB | 253..1152 | 915..16 | 4500 | 100 | Minus |
CG9018-RA | 1395 | CG9018-RA | 253..1101 | 915..67 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2236047..2236730 | 209..892 | 3420 | 100 | Plus |
3L | 28110227 | 3L | 2235777..2235974 | 16..213 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:26:27 has no hits.
BS11255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:25 Download gff for
BS11255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PB | 128..1026 | 17..915 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:07 Download gff for
BS11255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PB | 128..1026 | 17..915 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:19 Download gff for
BS11255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 253..1152 | 16..915 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:34 Download gff for
BS11255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 253..1152 | 16..915 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:34 Download gff for
BS11255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2235777..2235972 | 16..211 | 100 | <- | Plus |
3L | 2236050..2236729 | 212..891 | 100 | <- | Plus |
3L | 2236801..2236824 | 892..915 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:19 Download gff for
BS11255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2235777..2235972 | 16..211 | 100 | <- | Plus |
arm_3L | 2236050..2236729 | 212..891 | 100 | <- | Plus |
arm_3L | 2236801..2236824 | 892..915 | 100 | | Plus |
BS11255.5prime Sequence
884 bp (812 high quality bases) assembled on 2006-04-18
> BS11255.5prime
GAAGTTATCAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGA
AGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTG
TGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCA
GCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACC
TGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGC
AAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAA
GTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCT
GGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCG
CGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGAC
CAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCG
GCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGC
CACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAA
CTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCC
ACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTC
ATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGT
GCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCA
TCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATACAGGTG
AACGAAGCTGTGGATCTGCTGAACGACTACNATG
BS11255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-PB | 1026 | CG9018-RB | 1..868 | 17..884 | 4321 | 99.8 | Plus |
CG9018-PA | 1128 | CG9018-RA | 1..868 | 17..884 | 4321 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RA | 1395 | CG9018-RA | 125..993 | 16..884 | 4334 | 99.9 | Plus |
CG9018-RB | 1283 | CG9018-RB | 125..993 | 16..884 | 4334 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2236047..2236730 | 850..167 | 3420 | 100 | Minus |
3L | 28110227 | 3L | 2236801..2236952 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:20:08 has no hits.
BS11255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:26 Download gff for
BS11255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PB | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:09 Download gff for
BS11255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:09 Download gff for
BS11255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 118..993 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:55 Download gff for
BS11255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 118..993 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:55 Download gff for
BS11255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2235936..2235972 | 848..884 | 97 | <- | Minus |
3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
3L | 2236801..2236956 | 9..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:09 Download gff for
BS11255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2235936..2235972 | 848..884 | 97 | <- | Minus |
arm_3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
arm_3L | 2236801..2236956 | 9..167 | 98 | | Minus |
BS11255.complete Sequence
1058 bp assembled on 2006-11-01
GenBank Submission: FJ636797
> BS11255.complete
GAAGTTATCAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGA
AGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTG
TGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCA
GCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACC
TGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGC
AAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAA
GTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCT
GGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCG
CGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGAC
CAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCG
GCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGC
CACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAA
CTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCC
ACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTC
ATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGT
GCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCA
TCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATACAGGTG
AACGAAGCTGTGGATCTGCTGAACGACTACAATGCTCGGTTGGCGGCGGA
GATGGAGGAGCGCTCCAAGTTGGCGACCATGCTGCGAGATTTTCAAGCGG
AGCAGAAGGAACTTCTCTCCCAGGCTGAGCAACGCCTCGATGTACGTTCT
TCATGGTCTAGGCAATGCATGGTCCTTGGGGTTGTTAGATAAAAGCTTTC
TAGACCAT
BS11255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RB | 1026 | CG9018-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG9018-RA | 1128 | CG9018-PA | 1..976 | 17..992 | 4880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RB | 1283 | CG9018-RB | 125..1152 | 16..1043 | 5140 | 100 | Plus |
CG9018-RA | 1395 | CG9018-RA | 125..1101 | 16..992 | 4885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2236047..2236730 | 850..167 | 3420 | 100 | Minus |
3L | 28110227 | 3L | 2235777..2235974 | 1043..846 | 990 | 100 | Minus |
3L | 28110227 | 3L | 2236801..2236952 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:40 has no hits.
BS11255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:06 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:26 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 114..1148 | 9..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:46 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 126..1149 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:06 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 114..1148 | 9..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:42 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 126..1149 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:42 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2235780..2235972 | 848..1040 | 100 | <- | Minus |
3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
3L | 2236801..2236951 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:46 Download gff for
BS11255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2235780..2235972 | 848..1040 | 100 | <- | Minus |
arm_3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
arm_3L | 2236801..2236951 | 17..167 | 100 | | Minus |
BS11255.pep Sequence
Translation from 16 to 1041
> BS11255.pep
MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN
VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK
LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE
KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT
EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA
KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS
KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVR*
BS11255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-PB | 341 | CG9018-PB | 1..341 | 1..341 | 1746 | 100 | Plus |
CG9018-PA | 375 | CG9018-PA | 1..325 | 1..325 | 1663 | 100 | Plus |
CG15160-PB | 818 | CG15160-PB | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PA | 822 | CG15160-PA | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PC | 834 | CG15160-PC | 5..135 | 4..138 | 172 | 29.6 | Plus |