Clone Sequence Records
BS11256.3prime Sequence
537 bp (536 high quality bases) assembled on 2006-04-18
> BS11256.3prime
ATGGTCTAGAAAGCTTTTAGTTCCATCCGGAGCCACCGGAGAACCAGCCG
CCGCCGGACGACCAGCCACCGTGGCTGCTGCCATCGGCGATTCCGGAGCT
GATCAGCTTAATGATCTTCACATCTTCGGCGTGGTGTGCGTGTCCATGGC
CTCCGCTGGAGTAGTCGTAACCGTGGCCATGGCCATGGCTGTGACCCTCC
TCCTGGATGACCTTGATGATCTTAACATCCGAGCCGTGGCCGTGGCTGTG
ACCATAATCATGTCCGTGAGAGTGGCCCGCCTCGCTGATCACCTTGACGA
TCTTCACCTCCTCGGGAGCATGGGCATAGCCACCAGAGTAGCCGCCGGCC
CATCCGCCATGACCAGCCTCCTCGCTGATGACCTTGACGATTGTGGGGGC
GCCGCCTCCGCCGGATGACCAGCCACCACCTCCTCCAGTTGACCAGCCAC
CGCTAGCGCCGCCTCCGATGAATCCGGATTGGGCCAGGCTGAAGCAGGCA
ATCAGGCAGATGAAAACCTTCATGTCGACTGATAACT
BS11256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-PA | 507 | CG7406-RA | 1..507 | 523..17 | 2510 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 812 | CG7406-RA | 87..593 | 523..17 | 2520 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19077871..19078373 | 519..17 | 2500 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:49:24 has no hits.
BS11256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:27 Download gff for
BS11256.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 17..523 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:10 Download gff for
BS11256.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 17..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:38:05 Download gff for
BS11256.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..597 | 8..531 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:04:47 Download gff for
BS11256.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 80..602 | 8..531 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:04:47 Download gff for
BS11256.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19077864..19078382 | 8..527 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:38:05 Download gff for
BS11256.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18971897..18972415 | 8..527 | 98 | | Minus |
BS11256.5prime Sequence
537 bp (536 high quality bases) assembled on 2006-04-18
> BS11256.5prime
GAAGTTATCAGTCGACATGAAGGTTTTCATCTGCCTGATTGCCTGCTTCA
GCCTGGCCCAATCCGGATTCATCGGAGGCGGCGCTAGCGGTGGCTGGTCA
ACTGGAGGAGGTGGTGGCTGGTCATCCGGCGGAGGCGGCGCCCCCACAAT
CGTCAAGGTCATCAGCGAGGAGGCTGGTCATGGCGGATGGGCCGGCGGCT
ACTCTGGTGGCTATGCCCATGCTCCCGAGGAGGTGAAGATCGTCAAGGTG
ATCAGCGAGGCGGGCCACTCTCACGGACATGATTATGGTCACAGCCACGG
CCACGGCTCGGATGTTAAGATCATCAAGGTCATCCAGGAGGAGGGTCACA
GCCATGGCCATGGCCACGGTTACGACTACTCCAGCGGAGGCCATGGACAC
GCACACCACGCCGAAGATGTGAAGATCATTAAGCTGATCAGCTCCGGAAT
CGCCGATGGCAGCAGCCACGGTGGCTGGTCGTCCGGCGGCGGCTGGTTCT
CCGGTGGCTCCGGATGGAACTAAAAGCTTTCTAGACC
BS11256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-PA | 507 | CG7406-RA | 1..507 | 17..523 | 2510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 812 | CG7406-RA | 87..593 | 17..523 | 2520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19077871..19078373 | 21..523 | 2500 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:22:32 has no hits.
BS11256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:29 Download gff for
BS11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:11 Download gff for
BS11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:05 Download gff for
BS11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..597 | 9..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:07 Download gff for
BS11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 80..602 | 9..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:07 Download gff for
BS11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19077864..19078382 | 13..532 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:05 Download gff for
BS11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18971897..18972415 | 13..532 | 98 | | Plus |
BS11256.complete Sequence
539 bp assembled on 2006-11-01
GenBank Submission: FJ636798
> BS11256.complete
GAAGTTATCAGTCGACATGAAGGTTTTCATCTGCCTGATTGCCTGCTTCA
GCCTGGCCCAATCCGGATTCATCGGAGGCGGCGCTAGCGGTGGCTGGTCA
ACTGGAGGAGGTGGTGGCTGGTCATCCGGCGGAGGCGGCGCCCCCACAAT
CGTCAAGGTCATCAGCGAGGAGGCTGGTCATGGCGGATGGGCCGGCGGCT
ACTCTGGTGGCTATGCCCATGCTCCCGAGGAGGTGAAGATCGTCAAGGTG
ATCAGCGAGGCGGGCCACTCTCACGGACATGATTATGGTCACAGCCACGG
CCACGGCTCGGATGTTAAGATCATCAAGGTCATCCAGGAGGAGGGTCACA
GCCATGGCCATGGCCACGGTTACGACTACTCCAGCGGAGGCCATGGACAC
GCACACCACGCCGAAGATGTGAAGATCATTAAGCTGATCAGCTCCGGAAT
CGCCGATGGCAGCAGCCACGGTGGCTGGTCGTCCGGCGGCGGCTGGTTCT
CCGGTGGCTCCGGATGGAACTAAAAGCTTTCTAGACCAT
BS11256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 507 | CG7406-PA | 1..507 | 17..523 | 2520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 812 | CG7406-RA | 87..593 | 17..523 | 2520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19077871..19078373 | 21..523 | 2500 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:19:31 has no hits.
BS11256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:58 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:59 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..597 | 9..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:24 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 82..586 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:59 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..597 | 9..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:56 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 87..591 | 17..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:56 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19077867..19078371 | 17..521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:24 Download gff for
BS11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18971900..18972404 | 17..521 | 99 | | Plus |
BS11256.pep Sequence
Translation from 16 to 522
> BS11256.pep
MKVFICLIACFSLAQSGFIGGGASGGWSTGGGGGWSSGGGGAPTIVKVIS
EEAGHGGWAGGYSGGYAHAPEEVKIVKVISEAGHSHGHDYGHSHGHGSDV
KIIKVIQEEGHSHGHGHGYDYSSGGHGHAHHAEDVKIIKLISSGIADGSS
HGGWSSGGGWFSGGSGWN*
BS11256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-PA | 168 | CG7406-PA | 1..168 | 1..168 | 942 | 100 | Plus |
| CG15731-PA | 319 | CG15731-PA | 1..200 | 1..164 | 321 | 40.5 | Plus |
| CG14191-PA | 193 | CG14191-PA | 1..188 | 1..160 | 273 | 39.2 | Plus |
| CG12523-PB | 250 | CG12523-PB | 1..193 | 1..167 | 263 | 38.8 | Plus |
| CG12523-PA | 250 | CG12523-PA | 1..193 | 1..167 | 263 | 38.8 | Plus |
| CG15731-PA | 319 | CG15731-PA | 81..264 | 20..160 | 262 | 41.2 | Plus |
| CG15731-PA | 319 | CG15731-PA | 185..284 | 22..116 | 246 | 57.8 | Plus |
| CG15731-PA | 319 | CG15731-PA | 149..283 | 15..130 | 237 | 43.5 | Plus |
