Clone BS11258 Report

Search the DGRC for BS11258

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG10440-RA
Protein status:BS11258.pep: full length peptide match
Sequenced Size:1050

Clone Sequence Records

BS11258.3prime Sequence

822 bp (768 high quality bases) assembled on 2006-04-18

> BS11258.3prime
ATGGTCTAGAAAAGCTTTCACATTGGAACGCGTCGCGCCAGCAGATACTC
GGAGAACTGCTGGCCCCCAACGCTGGCCTCGATGGTGAAGCCGGCGTTGA
GGAGTCGGGTGAGCACCTGCACCGAGTTCAGCTTGCAGTAGCCGTTGAGG
GGGAAGCGAATGATTTGCCCCCAGTCGCCCTGGTTCCAGGACACTCCGCT
GCGACTCGACTGTGTCGCTTGGCTGGCCTCCGGGAAGAGCTCGTCGAGCA
GAGCCCGTTCTGCCGACAGCATTATGCGTTCGCCAAGGTCTGGCGAGATG
TGCAGCGCCACTACCTCGTAATTGCACTCCGGCGATGCGCTGGTCCTCGG
GCTCGTCTTGATGTGGCGAGCCGGTGGAGTGGGTGGCGCCACCAAATAGT
TGCCATTGCGAACGCGATCCTTGCGCATGCTTTCCAGCTGCTTAATCATC
GGCTCCACTTCGTAGTAGCGAGCCTCCTCCAGCAGCAGCTCCAGGTCGGG
AAAATCCTCGGCAATCAGAAGTCTTGAGTTTCTCATAAAGTTCAGAATGT
GGCGGAACATGCCCCCGTCGCGATCGATGAAATAGTGCTGCTTCAGCGAG
TCCAGCACGATGGGTATCTGGCCATTGAAGAGCTTGGCCAGCTTCGACTC
CGGGTACTTGGTGAGCGTCTCCAGTGAGCTGGTGTAGATGGTCCCGCCCA
CGTCGATGTGAACGGGCGCCGTATAGCGGGAGGCGGCGGCCACACACGGA
ATCCCGGTGATGGGCTTGTGGTTGCCGTGCAAATAGGAACTGGGCCCCGC
CGATGAGGTTCCTCCGACGGCG

BS11258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 1017 CG10440-RA 213..1017 822..18 3975 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 2451 CG10440-RB 735..1539 822..18 3995 99.8 Minus
CG10440-RA 2350 CG10440-RA 634..1438 822..18 3995 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21561158..21561591 18..451 2170 100 Plus
2R 25286936 2R 21561794..21562164 452..822 1825 99.5 Plus
Blast to na_te.dros performed 2015-02-12 19:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 3215..3273 418..357 113 69.4 Minus

BS11258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:32 Download gff for BS11258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 213..1017 18..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:15 Download gff for BS11258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 213..1017 18..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:28:26 Download gff for BS11258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 634..1441 15..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:22 Download gff for BS11258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 634..1441 15..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:22 Download gff for BS11258.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21561155..21561591 15..451 99 <- Plus
2R 21561794..21562164 452..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:28:26 Download gff for BS11258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17448660..17449096 15..451 99 <- Plus
arm_2R 17449299..17449669 452..822 99   Plus

BS11258.5prime Sequence

846 bp (785 high quality bases) assembled on 2006-04-18

> BS11258.5prime
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAG

BS11258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 1017 CG10440-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 2451 CG10440-RB 519..1352 13..846 4155 99.9 Plus
CG10440-RA 2350 CG10440-RA 418..1251 13..846 4155 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21561794..21562284 599..109 2455 100 Minus
2R 25286936 2R 21561345..21561591 846..600 1235 100 Minus
2R 25286936 2R 21562544..21562642 111..13 480 99 Minus
Blast to na_te.dros performed 2015-02-12 01:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 3215..3273 633..694 113 69.4 Plus

BS11258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:34 Download gff for BS11258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:17 Download gff for BS11258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:35 Download gff for BS11258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 415..1251 7..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:10 Download gff for BS11258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 415..1251 7..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:10 Download gff for BS11258.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21561345..21561591 600..846 100 <- Minus
2R 21561794..21562281 112..599 100 <- Minus
2R 21562544..21562645 7..111 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:35 Download gff for BS11258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17448850..17449096 600..846 100 <- Minus
arm_2R 17449299..17449786 112..599 100 <- Minus
arm_2R 17450049..17450150 7..111 96   Minus

BS11258.complete Sequence

1050 bp assembled on 2009-02-12

> BS11258.complete
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAGTCGC
AGCGGAGTGTCCTGGAACCAGGGCGACTGGGGGCAAATCATTCGCTTCCC
CCTCAACGGCTACTGCAAGCTGAACTCGGTGCAGGTGCTCACCCGACTCC
TCAACGCCGGCTTCACCATCGAGGCCAGCGTTGGGGGCCAGCAGTTCTCC
GAGTATCTGCTGGCGCGACGCGTTCCAATGTGAAAGCTTTTCTAGACCAT

BS11258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 1104 CG10440-PB 84..1104 13..1033 5090 99.9 Plus
CG10440-RA 1017 CG10440-PA 1..1017 17..1033 5085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 2451 CG10440-RB 519..1539 13..1033 5090 99.9 Plus
CG10440-RA 2350 CG10440-RA 418..1438 13..1033 5090 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21561794..21562284 599..109 2455 100 Minus
2R 25286936 2R 21561158..21561591 1033..600 2170 100 Minus
2R 25286936 2R 21562544..21562642 111..13 480 99 Minus
Blast to na_te.dros performed 2014-11-27 06:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 3215..3273 633..694 113 69.4 Plus

BS11258.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:45 Download gff for BS11258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 422..1437 17..1032 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:33 Download gff for BS11258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 422..1437 17..1032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:33 Download gff for BS11258.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21561794..21562281 112..599 100 <- Minus
2R 21561159..21561591 600..1032 100 <- Minus
2R 21562544..21562638 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:45 Download gff for BS11258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17448664..17449096 600..1032 100 <- Minus
arm_2R 17449299..17449786 112..599 100 <- Minus
arm_2R 17450049..17450143 17..111 100   Minus

BS11258.pep Sequence

Translation from 16 to 1032

> BS11258.pep
MDRERERDVKALEPRDLSSTGRIYARSDIKISSSPTVSPTISNSSSPTPT
PPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA
ASRYTAPVHIDVGGTIYTSSLETLTKYPESKLAKLFNGQIPIVLDSLKQH
YFIDRDGGMFRHILNFMRNSRLLIAEDFPDLELLLEEARYYEVEPMIKQL
ESMRKDRVRNGNYLVAPPTPPARHIKTSPRTSASPECNYEVVALHISPDL
GERIMLSAERALLDELFPEASQATQSSRSGVSWNQGDWGQIIRFPLNGYC
KLNSVQVLTRLLNAGFTIEASVGGQQFSEYLLARRVPM*

BS11258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 338 CG10440-PA 1..338 1..338 1727 100 Plus
CG10440-PB 367 CG10440-PB 30..367 1..338 1727 100 Plus
CG10830-PA 228 CG10830-PA 5..104 108..207 172 38.6 Plus