Clone Sequence Records
BS11258.3prime Sequence
822 bp (768 high quality bases) assembled on 2006-04-18
> BS11258.3prime
ATGGTCTAGAAAAGCTTTCACATTGGAACGCGTCGCGCCAGCAGATACTC
GGAGAACTGCTGGCCCCCAACGCTGGCCTCGATGGTGAAGCCGGCGTTGA
GGAGTCGGGTGAGCACCTGCACCGAGTTCAGCTTGCAGTAGCCGTTGAGG
GGGAAGCGAATGATTTGCCCCCAGTCGCCCTGGTTCCAGGACACTCCGCT
GCGACTCGACTGTGTCGCTTGGCTGGCCTCCGGGAAGAGCTCGTCGAGCA
GAGCCCGTTCTGCCGACAGCATTATGCGTTCGCCAAGGTCTGGCGAGATG
TGCAGCGCCACTACCTCGTAATTGCACTCCGGCGATGCGCTGGTCCTCGG
GCTCGTCTTGATGTGGCGAGCCGGTGGAGTGGGTGGCGCCACCAAATAGT
TGCCATTGCGAACGCGATCCTTGCGCATGCTTTCCAGCTGCTTAATCATC
GGCTCCACTTCGTAGTAGCGAGCCTCCTCCAGCAGCAGCTCCAGGTCGGG
AAAATCCTCGGCAATCAGAAGTCTTGAGTTTCTCATAAAGTTCAGAATGT
GGCGGAACATGCCCCCGTCGCGATCGATGAAATAGTGCTGCTTCAGCGAG
TCCAGCACGATGGGTATCTGGCCATTGAAGAGCTTGGCCAGCTTCGACTC
CGGGTACTTGGTGAGCGTCTCCAGTGAGCTGGTGTAGATGGTCCCGCCCA
CGTCGATGTGAACGGGCGCCGTATAGCGGGAGGCGGCGGCCACACACGGA
ATCCCGGTGATGGGCTTGTGGTTGCCGTGCAAATAGGAACTGGGCCCCGC
CGATGAGGTTCCTCCGACGGCG
BS11258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-PA | 1017 | CG10440-RA | 213..1017 | 822..18 | 3975 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 2451 | CG10440-RB | 735..1539 | 822..18 | 3995 | 99.8 | Minus |
CG10440-RA | 2350 | CG10440-RA | 634..1438 | 822..18 | 3995 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21561158..21561591 | 18..451 | 2170 | 100 | Plus |
2R | 25286936 | 2R | 21561794..21562164 | 452..822 | 1825 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-12 19:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 418..357 | 113 | 69.4 | Minus |
BS11258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:32 Download gff for
BS11258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 213..1017 | 18..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:15 Download gff for
BS11258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 213..1017 | 18..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:28:26 Download gff for
BS11258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 634..1441 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:22 Download gff for
BS11258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 634..1441 | 15..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:22 Download gff for
BS11258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21561155..21561591 | 15..451 | 99 | <- | Plus |
2R | 21561794..21562164 | 452..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:28:26 Download gff for
BS11258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17448660..17449096 | 15..451 | 99 | <- | Plus |
arm_2R | 17449299..17449669 | 452..822 | 99 | | Plus |
BS11258.5prime Sequence
846 bp (785 high quality bases) assembled on 2006-04-18
> BS11258.5prime
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAG
BS11258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-PA | 1017 | CG10440-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 2451 | CG10440-RB | 519..1352 | 13..846 | 4155 | 99.9 | Plus |
CG10440-RA | 2350 | CG10440-RA | 418..1251 | 13..846 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21561794..21562284 | 599..109 | 2455 | 100 | Minus |
2R | 25286936 | 2R | 21561345..21561591 | 846..600 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 21562544..21562642 | 111..13 | 480 | 99 | Minus |
Blast to na_te.dros performed 2015-02-12 01:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 633..694 | 113 | 69.4 | Plus |
BS11258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:34 Download gff for
BS11258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:17 Download gff for
BS11258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:35 Download gff for
BS11258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 415..1251 | 7..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:10 Download gff for
BS11258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 415..1251 | 7..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:10 Download gff for
BS11258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21561345..21561591 | 600..846 | 100 | <- | Minus |
2R | 21561794..21562281 | 112..599 | 100 | <- | Minus |
2R | 21562544..21562645 | 7..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:35 Download gff for
BS11258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17448850..17449096 | 600..846 | 100 | <- | Minus |
arm_2R | 17449299..17449786 | 112..599 | 100 | <- | Minus |
arm_2R | 17450049..17450150 | 7..111 | 96 | | Minus |
BS11258.complete Sequence
1050 bp assembled on 2009-02-12
> BS11258.complete
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAGTCGC
AGCGGAGTGTCCTGGAACCAGGGCGACTGGGGGCAAATCATTCGCTTCCC
CCTCAACGGCTACTGCAAGCTGAACTCGGTGCAGGTGCTCACCCGACTCC
TCAACGCCGGCTTCACCATCGAGGCCAGCGTTGGGGGCCAGCAGTTCTCC
GAGTATCTGCTGGCGCGACGCGTTCCAATGTGAAAGCTTTTCTAGACCAT
BS11258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 1104 | CG10440-PB | 84..1104 | 13..1033 | 5090 | 99.9 | Plus |
CG10440-RA | 1017 | CG10440-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 2451 | CG10440-RB | 519..1539 | 13..1033 | 5090 | 99.9 | Plus |
CG10440-RA | 2350 | CG10440-RA | 418..1438 | 13..1033 | 5090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21561794..21562284 | 599..109 | 2455 | 100 | Minus |
2R | 25286936 | 2R | 21561158..21561591 | 1033..600 | 2170 | 100 | Minus |
2R | 25286936 | 2R | 21562544..21562642 | 111..13 | 480 | 99 | Minus |
Blast to na_te.dros performed 2014-11-27 06:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 633..694 | 113 | 69.4 | Plus |
BS11258.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:45 Download gff for
BS11258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 422..1437 | 17..1032 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:33 Download gff for
BS11258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 422..1437 | 17..1032 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:33 Download gff for
BS11258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21561794..21562281 | 112..599 | 100 | <- | Minus |
2R | 21561159..21561591 | 600..1032 | 100 | <- | Minus |
2R | 21562544..21562638 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:45 Download gff for
BS11258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17448664..17449096 | 600..1032 | 100 | <- | Minus |
arm_2R | 17449299..17449786 | 112..599 | 100 | <- | Minus |
arm_2R | 17450049..17450143 | 17..111 | 100 | | Minus |
BS11258.pep Sequence
Translation from 16 to 1032
> BS11258.pep
MDRERERDVKALEPRDLSSTGRIYARSDIKISSSPTVSPTISNSSSPTPT
PPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA
ASRYTAPVHIDVGGTIYTSSLETLTKYPESKLAKLFNGQIPIVLDSLKQH
YFIDRDGGMFRHILNFMRNSRLLIAEDFPDLELLLEEARYYEVEPMIKQL
ESMRKDRVRNGNYLVAPPTPPARHIKTSPRTSASPECNYEVVALHISPDL
GERIMLSAERALLDELFPEASQATQSSRSGVSWNQGDWGQIIRFPLNGYC
KLNSVQVLTRLLNAGFTIEASVGGQQFSEYLLARRVPM*
BS11258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-PA | 338 | CG10440-PA | 1..338 | 1..338 | 1727 | 100 | Plus |
CG10440-PB | 367 | CG10440-PB | 30..367 | 1..338 | 1727 | 100 | Plus |
CG10830-PA | 228 | CG10830-PA | 5..104 | 108..207 | 172 | 38.6 | Plus |