Clone BS11259 Report

Search the DGRC for BS11259

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG1941-RA
Protein status:BS11259.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11259.3prime Sequence

865 bp (793 high quality bases) assembled on 2006-04-18

> BS11259.3prime
ATGGTCTAGAAAGCTTCTAGTGTATAATCAGCTTGTCCTGCTTGGAGTTC
GGTATGTACTGATCCTTGTACTTGGCGAACATCTTCTCCAGGTCGTCAAT
AACCTGTTTGTGTATCTTATCCACATAGGCTGCGTCTGGTTGATCGCTCT
GAACCACGTCGATGGGAGCGCCAACAACTTGGACAATGCGTCGACGGTTG
GGCAGAAAGCCAAAGGAGTAGTTGAAGATGCCCCGGCCAACGGGAATCAG
CGGAGATATCCCCGTTATCCTCTTTACAAAGTCTTGAAAGCGACGAACCC
GAGAGTTCGGTGGATTGGCAACCTGATCCAGAATGTCCACCTCGCCAAAG
GAAAACGTGGGAACAATCGAAGACCCTGTCCTAATGGCCATTTTAACGAA
TCCCTTGCGGTTCTTCAGTGTCAATATATATTTGCCAGGGTGCGAGTCTA
GTGCCTCCTGGGCACCACCCACCAGAATAGCCACCGCGTTGGAGGTGAAC
CCATCACGATTGTCCTTGTGCTTGGGATCGTTTGATTTGGTCAGCAGATA
TACTAAGGCCTCCTTGGAAACCGACACCAGGCCCCAAGATCTCAGGAGAC
CACGCACGATGGGCGTCAGGAAGTTTTGATCCAAAGTGGCCACCTTGGGC
CTCACCTGTGGGAACAGTTGCAGCCACTTGGAGATGTCTAGACCCATATT
AATGGAAATGCCAGTCCCCAAAATTCCGTGCGGAAAACTGGCCAAAATGT
AGTTCTTATTCGGCGGCAGCTCTGCGGTCTTGACCAGCTGTACGGGAAAG
TAGTCCCGATAATGCCGAAACAGCCAATTGTTGCGGTTAATTTTCCAGCC
ATTGCCATCCATAAT

BS11259.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-PA 1059 CG1941-RA 211..1059 865..17 4220 99.8 Minus
CG1942-PA 1059 CG1942-RA 541..620 535..456 200 90 Minus
CG1942-PA 1059 CG1942-RA 883..917 193..159 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1203 CG1941-RD 274..1122 865..17 4230 99.9 Minus
CG1941-RC 1678 CG1941-RC 749..1597 865..17 4230 99.9 Minus
CG1941-RB 1390 CG1941-RB 461..1309 865..17 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7711074..7711418 717..373 1710 99.7 Minus
2R 25286936 2R 7711476..7711676 375..175 1005 100 Minus
2R 25286936 2R 7711742..7711900 175..17 795 100 Minus
2R 25286936 2R 7710848..7710981 849..716 670 100 Minus
2R 25286936 2R 7713309..7713648 712..373 440 75.3 Minus
2R 25286936 2R 7713708..7713903 370..175 425 81.1 Minus
2R 25286936 2R 7715880..7716208 715..387 295 72.6 Minus
2R 25286936 2R 7716283..7716478 370..175 260 75.5 Minus
2R 25286936 2R 7713137..7713239 818..716 230 81.6 Minus
Blast to na_te.dros performed on 2015-02-12 11:19:15 has no hits.

BS11259.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:35 Download gff for BS11259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 211..1059 17..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:18 Download gff for BS11259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 211..1059 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:17:18 Download gff for BS11259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 461..1309 17..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:32 Download gff for BS11259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 461..1309 17..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:32 Download gff for BS11259.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7711743..7711900 17..174 100   Minus
2R 7710777..7710793 849..865 100 -> Minus
2R 7710849..7710980 717..848 100 -> Minus
2R 7711075..7711416 375..716 99 -> Minus
2R 7711477..7711676 175..374 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:17:18 Download gff for BS11259.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3598282..3598298 849..865 100 -> Minus
arm_2R 3598354..3598485 717..848 100 -> Minus
arm_2R 3598580..3598921 375..716 99 -> Minus
arm_2R 3598982..3599181 175..374 100 -> Minus
arm_2R 3599248..3599405 17..174 100   Minus

BS11259.5prime Sequence

876 bp (841 high quality bases) assembled on 2006-04-18

> BS11259.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGTTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAACGGGGATATCTCCGCTGAATTCC
CGTTGGCCGGGGCATCTTCAACTACT

BS11259.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-PA 1059 CG1941-RA 1..829 17..845 4120 99.8 Plus
CG1942-PA 1059 CG1942-RA 541..620 557..636 200 90 Plus
CG1941-PA 1059 CG1941-RA 829..859 846..876 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1203 CG1941-RD 63..922 16..876 4265 99.8 Plus
CG1941-RC 1678 CG1941-RC 538..1397 16..876 4265 99.8 Plus
CG1941-RB 1390 CG1941-RB 250..1109 16..876 4265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7711074..7711418 375..719 1710 99.7 Plus
2R 25286936 2R 7711476..7711634 717..876 750 99.4 Plus
2R 25286936 2R 7710848..7710981 243..376 670 100 Plus
2R 25286936 2R 7710515..7710644 16..145 650 100 Plus
2R 25286936 2R 7710695..7710793 145..243 495 100 Plus
2R 25286936 2R 7713309..7713648 380..719 440 75.3 Plus
2R 25286936 2R 7715880..7716208 377..705 295 72.6 Plus
2R 25286936 2R 7713708..7713860 722..875 270 79.9 Plus
2R 25286936 2R 7713137..7713239 274..376 230 81.6 Plus
2R 25286936 2R 7716283..7716350 722..789 190 85.3 Plus
Blast to na_te.dros performed on 2015-02-12 05:21:43 has no hits.

BS11259.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:36 Download gff for BS11259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 1..859 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:20 Download gff for BS11259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 1..859 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:24 Download gff for BS11259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 242..1109 8..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:04 Download gff for BS11259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 242..1109 8..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:04 Download gff for BS11259.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7710507..7710644 8..145 97 -> Plus
2R 7710696..7710793 146..243 100 -> Plus
2R 7710849..7710980 244..375 100 -> Plus
2R 7711075..7711416 376..717 99 -> Plus
2R 7711477..7711634 718..876 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:24 Download gff for BS11259.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3598012..3598149 8..145 97 -> Plus
arm_2R 3598201..3598298 146..243 100 -> Plus
arm_2R 3598354..3598485 244..375 100 -> Plus
arm_2R 3598580..3598921 376..717 99 -> Plus
arm_2R 3598982..3599139 718..876 99   Plus

BS11259.complete Sequence

1091 bp assembled on 2006-11-01

GenBank Submission: FJ636799

> BS11259.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGTTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAACGGGGATATCTCCGCTGATTCCC
GTTGGCCGGGGCATCTTCAACTACTCCTTTGGCTTTCTGCCCAACCGTCG
ACGCATTGTCCAAGTTGTTGGCGCTCCCATCGACGTGGTTCAGAGCGATC
AACCAGACGCAGCCTATGTGGATAAGATACACAAACAGGTTATTGACGAC
CTGGAGAAGATGTTCGCCAAGTACAAGGATCAGTACATACCGAACTCCAA
GCAGGACAAGCTGATTATACACTAGAAGCTTTCTAGACCAT

BS11259.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1059 CG1941-PD 1..1059 17..1075 5280 99.9 Plus
CG1941-RC 1059 CG1941-PC 1..1059 17..1075 5280 99.9 Plus
CG1941-RB 1059 CG1941-PB 1..1059 17..1075 5280 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1203 CG1941-RD 63..1122 16..1075 5285 99.9 Plus
CG1941-RC 1678 CG1941-RC 538..1597 16..1075 5285 99.9 Plus
CG1941-RB 1390 CG1941-RB 250..1309 16..1075 5285 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7711074..7711418 375..719 1710 99.7 Plus
2R 25286936 2R 7711476..7711676 717..917 1005 100 Plus
2R 25286936 2R 7711742..7711900 917..1075 795 100 Plus
2R 25286936 2R 7710848..7710981 243..376 670 100 Plus
2R 25286936 2R 7710515..7710644 16..145 650 100 Plus
2R 25286936 2R 7710695..7710793 145..243 495 100 Plus
2R 25286936 2R 7713309..7713648 380..719 440 75.3 Plus
2R 25286936 2R 7713708..7713903 722..917 425 81.1 Plus
2R 25286936 2R 7715880..7716208 377..705 295 72.6 Plus
2R 25286936 2R 7716283..7716478 722..917 260 75.5 Plus
2R 25286936 2R 7713137..7713239 274..376 230 81.6 Plus
Blast to na_te.dros performed on 2014-11-26 15:42:49 has no hits.

BS11259.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:59 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RA 1..1059 17..1075 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:15 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RA 113..1180 8..1075 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:38 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 251..1309 17..1075 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:00 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RA 113..1180 8..1075 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:04 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 251..1309 17..1075 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:04 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7711743..7711900 918..1075 100   Plus
2R 7710516..7710644 17..145 100 -> Plus
2R 7710696..7710793 146..243 100 -> Plus
2R 7710849..7710980 244..375 100 -> Plus
2R 7711075..7711416 376..717 99 -> Plus
2R 7711477..7711676 718..917 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:38 Download gff for BS11259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3599248..3599405 918..1075 100   Plus
arm_2R 3598021..3598149 17..145 100 -> Plus
arm_2R 3598201..3598298 146..243 100 -> Plus
arm_2R 3598354..3598485 244..375 100 -> Plus
arm_2R 3598580..3598921 376..717 99 -> Plus
arm_2R 3598982..3599181 718..917 100 -> Plus

BS11259.pep Sequence

Translation from 16 to 1074

> BS11259.pep
MKIEWAPKGVPMERRRQTFAMAFLILSFMILSFGSYFFVAAVLFYGSLLW
RTIMVIYLVYVYANHKRTHSIMDGNGWKINRNNWLFRHYRDYFPVQLVKT
AELPPNKNYILASFPHGILGTGISINMGLDISKWLQLFPQVRPKVATLDQ
NFLTPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFTSNAVAI
LVGGAQEALDSHPGKYILTLKNRKGFVKMAIRTGSSIVPTFSFGEVDILD
QVANPPNSRVRRFQDFVKRITGISPLIPVGRGIFNYSFGFLPNRRRIVQV
VGAPIDVVQSDQPDAAYVDKIHKQVIDDLEKMFAKYKDQYIPNSKQDKLI
IH*

BS11259.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-PD 352 CG1941-PD 1..352 1..352 1837 100 Plus
CG1941-PC 352 CG1941-PC 1..352 1..352 1837 100 Plus
CG1941-PB 352 CG1941-PB 1..352 1..352 1837 100 Plus
CG1941-PA 352 CG1941-PA 1..352 1..352 1837 100 Plus
CG1942-PA 352 CG1942-PA 1..352 1..352 1376 73 Plus