Clone Sequence Records
BS11259.3prime Sequence
865 bp (793 high quality bases) assembled on 2006-04-18
> BS11259.3prime
ATGGTCTAGAAAGCTTCTAGTGTATAATCAGCTTGTCCTGCTTGGAGTTC
GGTATGTACTGATCCTTGTACTTGGCGAACATCTTCTCCAGGTCGTCAAT
AACCTGTTTGTGTATCTTATCCACATAGGCTGCGTCTGGTTGATCGCTCT
GAACCACGTCGATGGGAGCGCCAACAACTTGGACAATGCGTCGACGGTTG
GGCAGAAAGCCAAAGGAGTAGTTGAAGATGCCCCGGCCAACGGGAATCAG
CGGAGATATCCCCGTTATCCTCTTTACAAAGTCTTGAAAGCGACGAACCC
GAGAGTTCGGTGGATTGGCAACCTGATCCAGAATGTCCACCTCGCCAAAG
GAAAACGTGGGAACAATCGAAGACCCTGTCCTAATGGCCATTTTAACGAA
TCCCTTGCGGTTCTTCAGTGTCAATATATATTTGCCAGGGTGCGAGTCTA
GTGCCTCCTGGGCACCACCCACCAGAATAGCCACCGCGTTGGAGGTGAAC
CCATCACGATTGTCCTTGTGCTTGGGATCGTTTGATTTGGTCAGCAGATA
TACTAAGGCCTCCTTGGAAACCGACACCAGGCCCCAAGATCTCAGGAGAC
CACGCACGATGGGCGTCAGGAAGTTTTGATCCAAAGTGGCCACCTTGGGC
CTCACCTGTGGGAACAGTTGCAGCCACTTGGAGATGTCTAGACCCATATT
AATGGAAATGCCAGTCCCCAAAATTCCGTGCGGAAAACTGGCCAAAATGT
AGTTCTTATTCGGCGGCAGCTCTGCGGTCTTGACCAGCTGTACGGGAAAG
TAGTCCCGATAATGCCGAAACAGCCAATTGTTGCGGTTAATTTTCCAGCC
ATTGCCATCCATAAT
BS11259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-PA | 1059 | CG1941-RA | 211..1059 | 865..17 | 4220 | 99.8 | Minus |
CG1942-PA | 1059 | CG1942-RA | 541..620 | 535..456 | 200 | 90 | Minus |
CG1942-PA | 1059 | CG1942-RA | 883..917 | 193..159 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1203 | CG1941-RD | 274..1122 | 865..17 | 4230 | 99.9 | Minus |
CG1941-RC | 1678 | CG1941-RC | 749..1597 | 865..17 | 4230 | 99.9 | Minus |
CG1941-RB | 1390 | CG1941-RB | 461..1309 | 865..17 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7711074..7711418 | 717..373 | 1710 | 99.7 | Minus |
2R | 25286936 | 2R | 7711476..7711676 | 375..175 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 7711742..7711900 | 175..17 | 795 | 100 | Minus |
2R | 25286936 | 2R | 7710848..7710981 | 849..716 | 670 | 100 | Minus |
2R | 25286936 | 2R | 7713309..7713648 | 712..373 | 440 | 75.3 | Minus |
2R | 25286936 | 2R | 7713708..7713903 | 370..175 | 425 | 81.1 | Minus |
2R | 25286936 | 2R | 7715880..7716208 | 715..387 | 295 | 72.6 | Minus |
2R | 25286936 | 2R | 7716283..7716478 | 370..175 | 260 | 75.5 | Minus |
2R | 25286936 | 2R | 7713137..7713239 | 818..716 | 230 | 81.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:19:15 has no hits.
BS11259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:35 Download gff for
BS11259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 211..1059 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:18 Download gff for
BS11259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 211..1059 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:17:18 Download gff for
BS11259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 461..1309 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:32 Download gff for
BS11259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 461..1309 | 17..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:32 Download gff for
BS11259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7711743..7711900 | 17..174 | 100 | | Minus |
2R | 7710777..7710793 | 849..865 | 100 | -> | Minus |
2R | 7710849..7710980 | 717..848 | 100 | -> | Minus |
2R | 7711075..7711416 | 375..716 | 99 | -> | Minus |
2R | 7711477..7711676 | 175..374 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:17:18 Download gff for
BS11259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3598282..3598298 | 849..865 | 100 | -> | Minus |
arm_2R | 3598354..3598485 | 717..848 | 100 | -> | Minus |
arm_2R | 3598580..3598921 | 375..716 | 99 | -> | Minus |
arm_2R | 3598982..3599181 | 175..374 | 100 | -> | Minus |
arm_2R | 3599248..3599405 | 17..174 | 100 | | Minus |
BS11259.5prime Sequence
876 bp (841 high quality bases) assembled on 2006-04-18
> BS11259.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGTTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAACGGGGATATCTCCGCTGAATTCC
CGTTGGCCGGGGCATCTTCAACTACT
BS11259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-PA | 1059 | CG1941-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
CG1942-PA | 1059 | CG1942-RA | 541..620 | 557..636 | 200 | 90 | Plus |
CG1941-PA | 1059 | CG1941-RA | 829..859 | 846..876 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1203 | CG1941-RD | 63..922 | 16..876 | 4265 | 99.8 | Plus |
CG1941-RC | 1678 | CG1941-RC | 538..1397 | 16..876 | 4265 | 99.8 | Plus |
CG1941-RB | 1390 | CG1941-RB | 250..1109 | 16..876 | 4265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7711074..7711418 | 375..719 | 1710 | 99.7 | Plus |
2R | 25286936 | 2R | 7711476..7711634 | 717..876 | 750 | 99.4 | Plus |
2R | 25286936 | 2R | 7710848..7710981 | 243..376 | 670 | 100 | Plus |
2R | 25286936 | 2R | 7710515..7710644 | 16..145 | 650 | 100 | Plus |
2R | 25286936 | 2R | 7710695..7710793 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7713309..7713648 | 380..719 | 440 | 75.3 | Plus |
2R | 25286936 | 2R | 7715880..7716208 | 377..705 | 295 | 72.6 | Plus |
2R | 25286936 | 2R | 7713708..7713860 | 722..875 | 270 | 79.9 | Plus |
2R | 25286936 | 2R | 7713137..7713239 | 274..376 | 230 | 81.6 | Plus |
2R | 25286936 | 2R | 7716283..7716350 | 722..789 | 190 | 85.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:21:43 has no hits.
BS11259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:36 Download gff for
BS11259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 1..859 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:20 Download gff for
BS11259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 1..859 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:24 Download gff for
BS11259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 242..1109 | 8..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:04 Download gff for
BS11259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 242..1109 | 8..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:04 Download gff for
BS11259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7710507..7710644 | 8..145 | 97 | -> | Plus |
2R | 7710696..7710793 | 146..243 | 100 | -> | Plus |
2R | 7710849..7710980 | 244..375 | 100 | -> | Plus |
2R | 7711075..7711416 | 376..717 | 99 | -> | Plus |
2R | 7711477..7711634 | 718..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:24 Download gff for
BS11259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3598012..3598149 | 8..145 | 97 | -> | Plus |
arm_2R | 3598201..3598298 | 146..243 | 100 | -> | Plus |
arm_2R | 3598354..3598485 | 244..375 | 100 | -> | Plus |
arm_2R | 3598580..3598921 | 376..717 | 99 | -> | Plus |
arm_2R | 3598982..3599139 | 718..876 | 99 | | Plus |
BS11259.complete Sequence
1091 bp assembled on 2006-11-01
GenBank Submission: FJ636799
> BS11259.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGTTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAACGGGGATATCTCCGCTGATTCCC
GTTGGCCGGGGCATCTTCAACTACTCCTTTGGCTTTCTGCCCAACCGTCG
ACGCATTGTCCAAGTTGTTGGCGCTCCCATCGACGTGGTTCAGAGCGATC
AACCAGACGCAGCCTATGTGGATAAGATACACAAACAGGTTATTGACGAC
CTGGAGAAGATGTTCGCCAAGTACAAGGATCAGTACATACCGAACTCCAA
GCAGGACAAGCTGATTATACACTAGAAGCTTTCTAGACCAT
BS11259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1059 | CG1941-PD | 1..1059 | 17..1075 | 5280 | 99.9 | Plus |
CG1941-RC | 1059 | CG1941-PC | 1..1059 | 17..1075 | 5280 | 99.9 | Plus |
CG1941-RB | 1059 | CG1941-PB | 1..1059 | 17..1075 | 5280 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1203 | CG1941-RD | 63..1122 | 16..1075 | 5285 | 99.9 | Plus |
CG1941-RC | 1678 | CG1941-RC | 538..1597 | 16..1075 | 5285 | 99.9 | Plus |
CG1941-RB | 1390 | CG1941-RB | 250..1309 | 16..1075 | 5285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7711074..7711418 | 375..719 | 1710 | 99.7 | Plus |
2R | 25286936 | 2R | 7711476..7711676 | 717..917 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 7711742..7711900 | 917..1075 | 795 | 100 | Plus |
2R | 25286936 | 2R | 7710848..7710981 | 243..376 | 670 | 100 | Plus |
2R | 25286936 | 2R | 7710515..7710644 | 16..145 | 650 | 100 | Plus |
2R | 25286936 | 2R | 7710695..7710793 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7713309..7713648 | 380..719 | 440 | 75.3 | Plus |
2R | 25286936 | 2R | 7713708..7713903 | 722..917 | 425 | 81.1 | Plus |
2R | 25286936 | 2R | 7715880..7716208 | 377..705 | 295 | 72.6 | Plus |
2R | 25286936 | 2R | 7716283..7716478 | 722..917 | 260 | 75.5 | Plus |
2R | 25286936 | 2R | 7713137..7713239 | 274..376 | 230 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:49 has no hits.
BS11259.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:59 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RA | 1..1059 | 17..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:15 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RA | 113..1180 | 8..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:38 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 251..1309 | 17..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:00 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RA | 113..1180 | 8..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:04 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 251..1309 | 17..1075 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:04 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7711743..7711900 | 918..1075 | 100 | | Plus |
2R | 7710516..7710644 | 17..145 | 100 | -> | Plus |
2R | 7710696..7710793 | 146..243 | 100 | -> | Plus |
2R | 7710849..7710980 | 244..375 | 100 | -> | Plus |
2R | 7711075..7711416 | 376..717 | 99 | -> | Plus |
2R | 7711477..7711676 | 718..917 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:38 Download gff for
BS11259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3599248..3599405 | 918..1075 | 100 | | Plus |
arm_2R | 3598021..3598149 | 17..145 | 100 | -> | Plus |
arm_2R | 3598201..3598298 | 146..243 | 100 | -> | Plus |
arm_2R | 3598354..3598485 | 244..375 | 100 | -> | Plus |
arm_2R | 3598580..3598921 | 376..717 | 99 | -> | Plus |
arm_2R | 3598982..3599181 | 718..917 | 100 | -> | Plus |
BS11259.pep Sequence
Translation from 16 to 1074
> BS11259.pep
MKIEWAPKGVPMERRRQTFAMAFLILSFMILSFGSYFFVAAVLFYGSLLW
RTIMVIYLVYVYANHKRTHSIMDGNGWKINRNNWLFRHYRDYFPVQLVKT
AELPPNKNYILASFPHGILGTGISINMGLDISKWLQLFPQVRPKVATLDQ
NFLTPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFTSNAVAI
LVGGAQEALDSHPGKYILTLKNRKGFVKMAIRTGSSIVPTFSFGEVDILD
QVANPPNSRVRRFQDFVKRITGISPLIPVGRGIFNYSFGFLPNRRRIVQV
VGAPIDVVQSDQPDAAYVDKIHKQVIDDLEKMFAKYKDQYIPNSKQDKLI
IH*
BS11259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-PD | 352 | CG1941-PD | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1941-PC | 352 | CG1941-PC | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1941-PB | 352 | CG1941-PB | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1941-PA | 352 | CG1941-PA | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1942-PA | 352 | CG1942-PA | 1..352 | 1..352 | 1376 | 73 | Plus |