Clone Sequence Records
BS11263.3prime Sequence
222 bp (175 high quality bases) assembled on 2006-04-18
> BS11263.3prime
ATGGTCTAGAAAGCTTTTATTCTTCCGATCTGCGGTTTCTACTGCTGCGA
CCATTGCGGCTCCTGAGACCCCTTCTCCTTGTGATTTTCCTGACCTTCTT
TGGCCTCTTGACCTTTCGCTTATAGTGAGTGACAGTCTTCTTTTTTGAGC
TCGAGGAAGGTGAGGCTGTTGTTGTGGAGGCCGAAGCGGAAGTGGCGGTG
GTGGCCGAAGCGGAAGTAGTGG
BS11263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14266-PA | 339 | ng2-RA | 134..339 | 222..17 | 980 | 99 | Minus |
CG10781-PA | 324 | ng1-RA | 134..311 | 222..45 | 840 | 98.8 | Minus |
CG14266-PA | 339 | ng2-RA | 110..153 | 222..179 | 145 | 93.1 | Minus |
CG10781-PA | 324 | ng1-RA | 110..153 | 222..179 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 546 | CG14266-RA | 171..376 | 222..17 | 1000 | 99 | Minus |
ng1-RA | 523 | CG10781-RA | 172..349 | 222..45 | 860 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3240196..3240401 | 17..222 | 1000 | 99 | Plus |
X | 23542271 | X | 3242583..3242760 | 222..45 | 860 | 98.9 | Minus |
X | 23542271 | X | 3240377..3240425 | 174..222 | 185 | 91.8 | Plus |
X | 23542271 | X | 3242559..3242607 | 222..174 | 185 | 91.8 | Minus |
Blast to na_te.dros performed 2015-02-07 01:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 11094..11127 | 180..213 | 98 | 76.5 | Plus |
BS11263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:39 Download gff for
BS11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-PA | 134..339 | 17..222 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:24 Download gff for
BS11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14266-PA | 134..339 | 17..222 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:23:37 Download gff for
BS11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 171..379 | 14..222 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:02:05 Download gff for
BS11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 171..379 | 14..222 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:02:05 Download gff for
BS11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3240193..3240401 | 14..222 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:23:37 Download gff for
BS11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3134226..3134434 | 14..222 | 98 | | Plus |
BS11263.5prime Sequence
369 bp (368 high quality bases) assembled on 2006-04-18
> BS11263.5prime
GAAGTTATCAGTCGACATGAAGATCACCGTGGTACTCGTACTTCTCGCCA
CCTTCCTCGGCTGTGTGATGATCCACGAGTCGGAGGCGTCCACAACCACC
ACGTCCACCTCCGCCTCGGCCACTACCACTACTTCCGCTTCGGCGACCAC
CACTACTTCCGCTTCGGCCACCACCACCACTTCCGCTTCGGCCACCACAA
CAACAGCCTCACCTTCCTCGAGCTCAAAAAAGAAGACTGTCACTCACTAT
AAGCGAAAGGTCAAGAGGCCAAAGAAGGTCAGGAAAATCACAAGGAGAAG
GGGTCTCAGGAGCCGCAATGGTCGCAGCAGTAGAAACCGCAGATCGGAAG
AATAAAAGCTTTCTAGACC
BS11263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14266-PA | 339 | ng2-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
CG10781-PA | 324 | ng1-RA | 1..311 | 17..327 | 1555 | 100 | Plus |
CG10788-PB | 441 | ng3-RB | 91..137 | 155..201 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 546 | CG14266-RA | 37..376 | 16..355 | 1700 | 100 | Plus |
ng1-RA | 523 | CG10781-RA | 38..349 | 16..327 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3240196..3240535 | 355..16 | 1700 | 100 | Minus |
X | 23542271 | X | 3242449..3242760 | 16..327 | 1560 | 100 | Plus |
X | 23542271 | X | 3242543..3242607 | 134..198 | 250 | 92.3 | Plus |
X | 23542271 | X | 3240353..3240417 | 174..110 | 250 | 92.3 | Minus |
X | 23542271 | X | 3240377..3240441 | 198..134 | 250 | 92.3 | Minus |
X | 23542271 | X | 3242567..3242631 | 110..174 | 250 | 92.3 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:31:17 has no hits.
BS11263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:40 Download gff for
BS11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:25 Download gff for
BS11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14266-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:28 Download gff for
BS11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..379 | 8..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:21 Download gff for
BS11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..379 | 8..358 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:21 Download gff for
BS11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3240193..3240539 | 8..358 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:28 Download gff for
BS11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3134226..3134572 | 8..358 | 98 | | Minus |
BS11263.complete Sequence
371 bp assembled on 2006-11-01
GenBank Submission: FJ636800
> BS11263.complete
GAAGTTATCAGTCGACATGAAGATCACCGTGGTACTCGTACTTCTCGCCA
CCTTCCTCGGCTGTGTGATGATCCACGAGTCGGAGGCGTCCACAACCACC
ACGTCCACCTCCGCCTCGGCCACTACCACTACTTCCGCTTCGGCGACCAC
CACTACTTCCGCTTCGGCCACCACCACCACTTCCGCTTCGGCCACCACAA
CAACAGCCTCACCTTCCTCGAGCTCAAAAAAGAAGACTGTCACTCACTAT
AAGCGAAAGGTCAAGAGGCCAAAGAAGGTCAGGAAAATCACAAGGAGAAG
GGGTCTCAGGAGCCGCAATGGTCGCAGCAGTAGAAACCGCAGATCGGAAG
AATAAAAGCTTTCTAGACCAT
BS11263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 339 | CG14266-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
ng1-RA | 324 | CG10781-PA | 1..311 | 17..327 | 1555 | 100 | Plus |
ng2-RA | 339 | CG14266-PA | 94..158 | 134..198 | 250 | 92.3 | Plus |
ng2-RA | 339 | CG14266-PA | 118..182 | 110..174 | 250 | 92.3 | Plus |
ng1-RA | 324 | CG10781-PA | 94..158 | 134..198 | 250 | 92.3 | Plus |
ng1-RA | 324 | CG10781-PA | 118..182 | 110..174 | 250 | 92.3 | Plus |
ng3-RB | 441 | CG10788-PB | 91..137 | 155..201 | 175 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 546 | CG14266-RA | 37..376 | 16..355 | 1700 | 100 | Plus |
ng1-RA | 523 | CG10781-RA | 38..349 | 16..327 | 1560 | 100 | Plus |
ng2-RA | 546 | CG14266-RA | 131..195 | 134..198 | 250 | 92.3 | Plus |
ng2-RA | 546 | CG14266-RA | 155..219 | 110..174 | 250 | 92.3 | Plus |
ng1-RA | 523 | CG10781-RA | 132..196 | 134..198 | 250 | 92.3 | Plus |
ng1-RA | 523 | CG10781-RA | 156..220 | 110..174 | 250 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3240196..3240535 | 355..16 | 1700 | 100 | Minus |
X | 23542271 | X | 3242449..3242760 | 16..327 | 1560 | 100 | Plus |
X | 23542271 | X | 3240377..3240441 | 198..134 | 250 | 92.3 | Minus |
X | 23542271 | X | 3240353..3240417 | 174..110 | 250 | 92.3 | Minus |
X | 23542271 | X | 3242543..3242607 | 134..198 | 250 | 92.3 | Plus |
X | 23542271 | X | 3242567..3242631 | 110..174 | 250 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:23 has no hits.
BS11263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:57 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:41 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..379 | 8..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:11 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 38..368 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:58 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..379 | 8..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:37 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 38..368 | 17..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:37 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3240204..3240534 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:11 Download gff for
BS11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3134237..3134567 | 17..347 | 100 | | Minus |
BS11263.pep Sequence
Translation from 16 to 354
> BS11263.pep
MKITVVLVLLATFLGCVMIHESEASTTTTSTSASATTTTSASATTTTSAS
ATTTTSASATTTTASPSSSSKKKTVTHYKRKVKRPKKVRKITRRRGLRSR
NGRSSRNRRSEE*
BS11263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-PA | 112 | CG14266-PA | 1..112 | 1..112 | 536 | 100 | Plus |
ng1-PA | 107 | CG10781-PA | 1..105 | 1..105 | 496 | 99 | Plus |
CG33267-PB | 94 | CG33267-PB | 1..90 | 1..95 | 257 | 62.1 | Plus |
ng3-PB | 146 | CG10788-PB | 1..115 | 1..110 | 249 | 54.7 | Plus |
CG7377-PA | 94 | CG7377-PA | 1..90 | 1..95 | 238 | 60.4 | Plus |