Clone Sequence Records
BS11265.3prime Sequence
919 bp (857 high quality bases) assembled on 2006-04-18
> BS11265.3prime
ATGGTCTAGAAAGCTTTTAGTTCGAGGAGGTGGTGTTCTGAAACTCCTGC
CGGCAGTAACCCATCACAATGTCCGATCGGCAGTCGCCGCCCATTAGACC
CGGCAGGAGCACCGCCGCCCCCAAGATGGTCACCAGGGCTCCGAAGACCA
CCAGGCCCAGAGCGGGCAGCTTCTCCCGGCTGAGCAGGGCGTGCGGCTCC
ATCTGAATGTAGGCCAGGCCGGGCAGGATGTAGGCCAGGGGAATGGCCGC
CAGGAGACCATTCAGCTCCAGCACCGAACCCAGGCAGTCGGTCATGGGCG
AGATGACGAAGGCGCTGAACACGATGGCCATGGTAATGGCTTTCGAGTAC
TCATCGATAATGGCCCCCTTCTCCAGGCTGGGGTCCTTGTCCTGGGTGAA
CTCGCTGATGGGCTCCTTCAGCACGAACCGATGGACGAGGGCGCGCACAA
TCTCGCGGGACACGAAGCACTCGATGGGGAAGGTCAGGAGTATCGATATG
GAGAAGAGCACACGCGAGAAGTTCATCAGGTCGTCATCCCAGCAGTAGTT
CTCCAGCAGGTCGCCTTGGGAAAGAGCGCGGAAGGTGGAGTAGCCGGCGA
TGCCGAAGAGGGCCGCCACCGTCCAGGCAAATCCAATCGAAATGTGGGTG
ACCTTCTCCCAGCGCTCCATGGTCGCGTCGCGCATCGATTGATAAACGAG
GAAGGTGTTGTGATGACACATGAAAGCGAAGACCATGATGCCCGTGGCCG
GGATTAGATCCGAGTTGGCGAACCGCCACGATTCCGCCGTGTCCGTCACC
TTATAATCGCCCGACATGAGCTTGATGATGACGGCAAACAGGATGAAGAC
CACGCACGCCAGGCTAATGAAGCTGGCTCTGGGCAGTCTGGAGACGTTCT
TGTAGAGACAGAGGGGCAT
BS11265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-PA | 1587 | CG13743-RA | 685..1587 | 919..17 | 4490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RB | 3463 | CG13743-RB | 905..1807 | 919..17 | 4500 | 99.9 | Minus |
CG13743-RA | 3523 | CG13743-RA | 965..1867 | 919..17 | 4500 | 99.9 | Minus |
CG13743-RC | 3195 | CG13743-RC | 992..1539 | 564..17 | 2740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9046506..9046748 | 17..259 | 1215 | 100 | Plus |
2R | 25286936 | 2R | 9047657..9047851 | 259..453 | 975 | 100 | Plus |
2R | 25286936 | 2R | 9048175..9048338 | 564..727 | 820 | 100 | Plus |
2R | 25286936 | 2R | 9049879..9050001 | 797..919 | 600 | 99.2 | Plus |
2R | 25286936 | 2R | 9047914..9048028 | 452..566 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9048467..9048537 | 727..797 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 18:07:57 has no hits.
BS11265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:44 Download gff for
BS11265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 685..1587 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:29 Download gff for
BS11265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 685..1587 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:40:34 Download gff for
BS11265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 965..1870 | 11..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:07:01 Download gff for
BS11265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 965..1870 | 11..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:07:01 Download gff for
BS11265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9046503..9046748 | 11..259 | 98 | <- | Plus |
2R | 9047658..9047849 | 260..451 | 100 | <- | Plus |
2R | 9047914..9048026 | 452..564 | 100 | <- | Plus |
2R | 9048176..9048337 | 565..726 | 100 | <- | Plus |
2R | 9048467..9048537 | 727..797 | 100 | <- | Plus |
2R | 9049880..9050001 | 798..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:40:34 Download gff for
BS11265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4935419..4935531 | 452..564 | 100 | <- | Plus |
arm_2R | 4934008..4934253 | 11..259 | 98 | <- | Plus |
arm_2R | 4935163..4935354 | 260..451 | 100 | <- | Plus |
arm_2R | 4935681..4935842 | 565..726 | 100 | <- | Plus |
arm_2R | 4935972..4936042 | 727..797 | 100 | <- | Plus |
arm_2R | 4937385..4937506 | 798..919 | 99 | | Plus |
BS11265.5prime Sequence
832 bp (817 high quality bases) assembled on 2006-04-18
> BS11265.5prime
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACG
BS11265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-PA | 1587 | CG13743-RA | 1..816 | 17..832 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RA | 3523 | CG13743-RA | 279..1096 | 15..832 | 4060 | 99.8 | Plus |
CG13743-RB | 3463 | CG13743-RB | 348..1036 | 144..832 | 3415 | 99.7 | Plus |
CG13743-RC | 3195 | CG13743-RC | 313..992 | 144..823 | 3370 | 99.7 | Plus |
CG13743-RB | 3463 | CG13743-RB | 279..349 | 15..85 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9050841..9051153 | 456..144 | 1550 | 99.7 | Minus |
2R | 25286936 | 2R | 9049879..9050133 | 823..569 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 9050515..9050630 | 569..454 | 565 | 99.1 | Minus |
2R | 25286936 | 2R | 9059254..9059325 | 86..15 | 360 | 100 | Minus |
2R | 25286936 | 2R | 9056573..9056636 | 145..82 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:06:24 has no hits.
BS11265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:45 Download gff for
BS11265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:31 Download gff for
BS11265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:33 Download gff for
BS11265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 275..1096 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:29 Download gff for
BS11265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 275..1096 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:29 Download gff for
BS11265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9059255..9059329 | 10..85 | 97 | | Minus |
2R | 9049879..9050132 | 570..823 | 100 | <- | Minus |
2R | 9050515..9050629 | 455..569 | 99 | <- | Minus |
2R | 9050843..9051151 | 146..454 | 99 | <- | Minus |
2R | 9056573..9056632 | 86..145 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:33 Download gff for
BS11265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4938348..4938656 | 146..454 | 99 | <- | Minus |
arm_2R | 4944078..4944137 | 86..145 | 100 | <- | Minus |
arm_2R | 4946760..4946834 | 10..85 | 97 | | Minus |
arm_2R | 4937384..4937637 | 570..823 | 100 | <- | Minus |
arm_2R | 4938020..4938134 | 455..569 | 99 | <- | Minus |
BS11265.complete Sequence
1619 bp assembled on 2006-11-01
GenBank Submission: FJ636801
> BS11265.complete
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACGGCGGAATCGTGGCGGTTC
GCCAACTCGGATCTAATCCCGGCCACGGGCATCATGGTCTTCGCTTTCAT
GTGTCATCACAACACCTTCCTCGTTTATCAATCGATGCGCGACGCGACCA
TGGAGCGCTGGGAGAAGGTCACCCACATTTCGATTGGATTTGCCTGGACG
GTGGCGGCCCTCTTCGGCATCGCCGGCTACTCCACCTTCCGCGCTCTTTC
CCAAGGCGACCTGCTGGAGAACTACTGCTGGGATGACGACCTGATGAACT
TCTCGCGTGTGCTCTTCTCCATATCGATACTCCTGACCTTCCCCATCGAG
TGCTTCGTGTCCCGCGAGATTGTGCGCGCCCTCGTCCATCGGTTCGTGCT
GAAGGAGCCCATCAGCGAGTTCACCCAGGACAAGGACCCCAGCCTGGAGA
AGGGGGCCATTATCGATGAGTACTCGAAAGCCATTACCATGGCCATCGTG
TTCAGCGCCTTCGTCATCTCGCCCATGACCGACTGCCTGGGTTCGGTGCT
GGAGCTGAATGGTCTCCTGGCGGCCATTCCCCTGGCCTACATCCTGCCCG
GCCTGGCCTACATTCAGATGGAGCCGCACGCCCTGCTCAGCCGGGAGAAG
CTGCCCGCTCTGGGCCTGGTGGTCTTCGGAGCCCTGGTGACCATCTTGGG
GGCGGCGGTGCTCCTGCCGGGTCTAATGGGCGGCGACTGCCGATCGGACA
TTGTGATGGGTTACTGCCGGCAGGAGTTTCAGAACACCACCTCCTCGAAC
TAAAAGCTTTCTAGACCAT
BS11265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RA | 1587 | CG13743-PA | 1..1587 | 17..1603 | 7905 | 99.9 | Plus |
CG13743-RB | 1527 | CG13743-PB | 68..1527 | 144..1603 | 7270 | 99.9 | Plus |
CG13743-RC | 777 | CG13743-PC | 68..747 | 144..823 | 3370 | 99.7 | Plus |
CG13743-RB | 1527 | CG13743-PB | 1..69 | 17..85 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RA | 3523 | CG13743-RA | 279..1867 | 15..1603 | 7915 | 99.9 | Plus |
CG13743-RB | 3463 | CG13743-RB | 348..1807 | 144..1603 | 7270 | 99.9 | Plus |
CG13743-RC | 3195 | CG13743-RC | 313..992 | 144..823 | 3370 | 99.7 | Plus |
CG13743-RB | 3463 | CG13743-RB | 279..349 | 15..85 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9050841..9051153 | 456..144 | 1550 | 99.7 | Minus |
2R | 25286936 | 2R | 9049879..9050133 | 823..569 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 9046506..9046748 | 1603..1361 | 1215 | 100 | Minus |
2R | 25286936 | 2R | 9047657..9047851 | 1361..1167 | 975 | 100 | Minus |
2R | 25286936 | 2R | 9048175..9048338 | 1056..893 | 820 | 100 | Minus |
2R | 25286936 | 2R | 9047914..9048028 | 1168..1054 | 575 | 100 | Minus |
2R | 25286936 | 2R | 9050515..9050630 | 569..454 | 565 | 99.1 | Minus |
2R | 25286936 | 2R | 9059254..9059325 | 86..15 | 360 | 100 | Minus |
2R | 25286936 | 2R | 9048467..9048537 | 893..823 | 355 | 100 | Minus |
2R | 25286936 | 2R | 9056573..9056636 | 145..82 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:08:20 has no hits.
BS11265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:09 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 1..1587 | 17..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:14 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 280..1864 | 17..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:19 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 281..1865 | 17..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:09 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 274..1869 | 10..1609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:51 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 281..1865 | 17..1601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:51 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9046508..9046748 | 1361..1601 | 100 | <- | Minus |
2R | 9047658..9047849 | 1169..1360 | 100 | <- | Minus |
2R | 9047914..9048026 | 1056..1168 | 100 | <- | Minus |
2R | 9048176..9048337 | 894..1055 | 100 | <- | Minus |
2R | 9048467..9048537 | 823..893 | 100 | <- | Minus |
2R | 9049880..9050132 | 570..822 | 100 | <- | Minus |
2R | 9050515..9050629 | 455..569 | 99 | <- | Minus |
2R | 9050843..9051151 | 146..454 | 99 | <- | Minus |
2R | 9056573..9056632 | 86..145 | 100 | <- | Minus |
2R | 9059255..9059323 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:19 Download gff for
BS11265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4934013..4934253 | 1361..1601 | 100 | <- | Minus |
arm_2R | 4935163..4935354 | 1169..1360 | 100 | <- | Minus |
arm_2R | 4935419..4935531 | 1056..1168 | 100 | <- | Minus |
arm_2R | 4935681..4935842 | 894..1055 | 100 | <- | Minus |
arm_2R | 4935972..4936042 | 823..893 | 100 | <- | Minus |
arm_2R | 4937385..4937637 | 570..822 | 100 | <- | Minus |
arm_2R | 4938020..4938134 | 455..569 | 99 | <- | Minus |
arm_2R | 4938348..4938656 | 146..454 | 99 | <- | Minus |
arm_2R | 4944078..4944137 | 86..145 | 100 | <- | Minus |
arm_2R | 4946760..4946828 | 17..85 | 100 | | Minus |
BS11265.pep Sequence
Translation from 16 to 1602
> BS11265.pep
MNMNMNDSRRNTATEFSYILQRQGSDVSVAEAYAFDDFNNIMKNNHQTHQ
QQGQPQQPHQQQQQPPQQQQQQQHRQHSQQQQQAQQDAGLGDTLSSLPQA
SFNYINSIVGSGVIGIPYALHRAGFGLGLALLILVAYITDYSLILMVRCG
HICGRFSYPGIMEAAYGKYGYYLLSLLQFMYPFLAMISYNVVVGDTLSKV
LVRFFPSWGGSMGAVRLGVVFFVNVGVVMPLCLYKNVSRLARASFISLAC
VVFILFAVIIKLMSGDYKVTDTAESWRFANSDLIPATGIMVFAFMCHHNT
FLVYQSMRDATMERWEKVTHISIGFAWTVAALFGIAGYSTFRALSQGDLL
ENYCWDDDLMNFSRVLFSISILLTFPIECFVSREIVRALVHRFVLKEPIS
EFTQDKDPSLEKGAIIDEYSKAITMAIVFSAFVISPMTDCLGSVLELNGL
LAAIPLAYILPGLAYIQMEPHALLSREKLPALGLVVFGALVTILGAAVLL
PGLMGGDCRSDIVMGYCRQEFQNTTSSN*
BS11265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-PA | 528 | CG13743-PA | 1..528 | 1..528 | 2725 | 100 | Plus |
CG13743-PB | 508 | CG13743-PB | 1..508 | 1..528 | 2592 | 96.2 | Plus |
CG13743-PC | 258 | CG13743-PC | 1..254 | 1..274 | 1262 | 91.2 | Plus |
CG30394-PB | 831 | CG30394-PB | 13..387 | 106..495 | 207 | 21.7 | Plus |
CG30394-PA | 831 | CG30394-PA | 13..387 | 106..495 | 207 | 21.7 | Plus |