Clone BS11265 Report

Search the DGRC for BS11265

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG13743-RA
Protein status:BS11265.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11265.3prime Sequence

919 bp (857 high quality bases) assembled on 2006-04-18

> BS11265.3prime
ATGGTCTAGAAAGCTTTTAGTTCGAGGAGGTGGTGTTCTGAAACTCCTGC
CGGCAGTAACCCATCACAATGTCCGATCGGCAGTCGCCGCCCATTAGACC
CGGCAGGAGCACCGCCGCCCCCAAGATGGTCACCAGGGCTCCGAAGACCA
CCAGGCCCAGAGCGGGCAGCTTCTCCCGGCTGAGCAGGGCGTGCGGCTCC
ATCTGAATGTAGGCCAGGCCGGGCAGGATGTAGGCCAGGGGAATGGCCGC
CAGGAGACCATTCAGCTCCAGCACCGAACCCAGGCAGTCGGTCATGGGCG
AGATGACGAAGGCGCTGAACACGATGGCCATGGTAATGGCTTTCGAGTAC
TCATCGATAATGGCCCCCTTCTCCAGGCTGGGGTCCTTGTCCTGGGTGAA
CTCGCTGATGGGCTCCTTCAGCACGAACCGATGGACGAGGGCGCGCACAA
TCTCGCGGGACACGAAGCACTCGATGGGGAAGGTCAGGAGTATCGATATG
GAGAAGAGCACACGCGAGAAGTTCATCAGGTCGTCATCCCAGCAGTAGTT
CTCCAGCAGGTCGCCTTGGGAAAGAGCGCGGAAGGTGGAGTAGCCGGCGA
TGCCGAAGAGGGCCGCCACCGTCCAGGCAAATCCAATCGAAATGTGGGTG
ACCTTCTCCCAGCGCTCCATGGTCGCGTCGCGCATCGATTGATAAACGAG
GAAGGTGTTGTGATGACACATGAAAGCGAAGACCATGATGCCCGTGGCCG
GGATTAGATCCGAGTTGGCGAACCGCCACGATTCCGCCGTGTCCGTCACC
TTATAATCGCCCGACATGAGCTTGATGATGACGGCAAACAGGATGAAGAC
CACGCACGCCAGGCTAATGAAGCTGGCTCTGGGCAGTCTGGAGACGTTCT
TGTAGAGACAGAGGGGCAT

BS11265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-PA 1587 CG13743-RA 685..1587 919..17 4490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RB 3463 CG13743-RB 905..1807 919..17 4500 99.9 Minus
CG13743-RA 3523 CG13743-RA 965..1867 919..17 4500 99.9 Minus
CG13743-RC 3195 CG13743-RC 992..1539 564..17 2740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9046506..9046748 17..259 1215 100 Plus
2R 25286936 2R 9047657..9047851 259..453 975 100 Plus
2R 25286936 2R 9048175..9048338 564..727 820 100 Plus
2R 25286936 2R 9049879..9050001 797..919 600 99.2 Plus
2R 25286936 2R 9047914..9048028 452..566 575 100 Plus
2R 25286936 2R 9048467..9048537 727..797 355 100 Plus
Blast to na_te.dros performed on 2015-02-03 18:07:57 has no hits.

BS11265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:44 Download gff for BS11265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 685..1587 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:29 Download gff for BS11265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 685..1587 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:40:34 Download gff for BS11265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 965..1870 11..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:07:01 Download gff for BS11265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 965..1870 11..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:07:01 Download gff for BS11265.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9046503..9046748 11..259 98 <- Plus
2R 9047658..9047849 260..451 100 <- Plus
2R 9047914..9048026 452..564 100 <- Plus
2R 9048176..9048337 565..726 100 <- Plus
2R 9048467..9048537 727..797 100 <- Plus
2R 9049880..9050001 798..919 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:40:34 Download gff for BS11265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4935419..4935531 452..564 100 <- Plus
arm_2R 4934008..4934253 11..259 98 <- Plus
arm_2R 4935163..4935354 260..451 100 <- Plus
arm_2R 4935681..4935842 565..726 100 <- Plus
arm_2R 4935972..4936042 727..797 100 <- Plus
arm_2R 4937385..4937506 798..919 99   Plus

BS11265.5prime Sequence

832 bp (817 high quality bases) assembled on 2006-04-18

> BS11265.5prime
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACG

BS11265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-PA 1587 CG13743-RA 1..816 17..832 4030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RA 3523 CG13743-RA 279..1096 15..832 4060 99.8 Plus
CG13743-RB 3463 CG13743-RB 348..1036 144..832 3415 99.7 Plus
CG13743-RC 3195 CG13743-RC 313..992 144..823 3370 99.7 Plus
CG13743-RB 3463 CG13743-RB 279..349 15..85 355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9050841..9051153 456..144 1550 99.7 Minus
2R 25286936 2R 9049879..9050133 823..569 1275 100 Minus
2R 25286936 2R 9050515..9050630 569..454 565 99.1 Minus
2R 25286936 2R 9059254..9059325 86..15 360 100 Minus
2R 25286936 2R 9056573..9056636 145..82 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:06:24 has no hits.

BS11265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:45 Download gff for BS11265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:31 Download gff for BS11265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:33 Download gff for BS11265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 275..1096 10..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:29 Download gff for BS11265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 275..1096 10..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:29 Download gff for BS11265.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9059255..9059329 10..85 97   Minus
2R 9049879..9050132 570..823 100 <- Minus
2R 9050515..9050629 455..569 99 <- Minus
2R 9050843..9051151 146..454 99 <- Minus
2R 9056573..9056632 86..145 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:33 Download gff for BS11265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4938348..4938656 146..454 99 <- Minus
arm_2R 4944078..4944137 86..145 100 <- Minus
arm_2R 4946760..4946834 10..85 97   Minus
arm_2R 4937384..4937637 570..823 100 <- Minus
arm_2R 4938020..4938134 455..569 99 <- Minus

BS11265.complete Sequence

1619 bp assembled on 2006-11-01

GenBank Submission: FJ636801

> BS11265.complete
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACGGCGGAATCGTGGCGGTTC
GCCAACTCGGATCTAATCCCGGCCACGGGCATCATGGTCTTCGCTTTCAT
GTGTCATCACAACACCTTCCTCGTTTATCAATCGATGCGCGACGCGACCA
TGGAGCGCTGGGAGAAGGTCACCCACATTTCGATTGGATTTGCCTGGACG
GTGGCGGCCCTCTTCGGCATCGCCGGCTACTCCACCTTCCGCGCTCTTTC
CCAAGGCGACCTGCTGGAGAACTACTGCTGGGATGACGACCTGATGAACT
TCTCGCGTGTGCTCTTCTCCATATCGATACTCCTGACCTTCCCCATCGAG
TGCTTCGTGTCCCGCGAGATTGTGCGCGCCCTCGTCCATCGGTTCGTGCT
GAAGGAGCCCATCAGCGAGTTCACCCAGGACAAGGACCCCAGCCTGGAGA
AGGGGGCCATTATCGATGAGTACTCGAAAGCCATTACCATGGCCATCGTG
TTCAGCGCCTTCGTCATCTCGCCCATGACCGACTGCCTGGGTTCGGTGCT
GGAGCTGAATGGTCTCCTGGCGGCCATTCCCCTGGCCTACATCCTGCCCG
GCCTGGCCTACATTCAGATGGAGCCGCACGCCCTGCTCAGCCGGGAGAAG
CTGCCCGCTCTGGGCCTGGTGGTCTTCGGAGCCCTGGTGACCATCTTGGG
GGCGGCGGTGCTCCTGCCGGGTCTAATGGGCGGCGACTGCCGATCGGACA
TTGTGATGGGTTACTGCCGGCAGGAGTTTCAGAACACCACCTCCTCGAAC
TAAAAGCTTTCTAGACCAT

BS11265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RA 1587 CG13743-PA 1..1587 17..1603 7905 99.9 Plus
CG13743-RB 1527 CG13743-PB 68..1527 144..1603 7270 99.9 Plus
CG13743-RC 777 CG13743-PC 68..747 144..823 3370 99.7 Plus
CG13743-RB 1527 CG13743-PB 1..69 17..85 345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RA 3523 CG13743-RA 279..1867 15..1603 7915 99.9 Plus
CG13743-RB 3463 CG13743-RB 348..1807 144..1603 7270 99.9 Plus
CG13743-RC 3195 CG13743-RC 313..992 144..823 3370 99.7 Plus
CG13743-RB 3463 CG13743-RB 279..349 15..85 355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9050841..9051153 456..144 1550 99.7 Minus
2R 25286936 2R 9049879..9050133 823..569 1275 100 Minus
2R 25286936 2R 9046506..9046748 1603..1361 1215 100 Minus
2R 25286936 2R 9047657..9047851 1361..1167 975 100 Minus
2R 25286936 2R 9048175..9048338 1056..893 820 100 Minus
2R 25286936 2R 9047914..9048028 1168..1054 575 100 Minus
2R 25286936 2R 9050515..9050630 569..454 565 99.1 Minus
2R 25286936 2R 9059254..9059325 86..15 360 100 Minus
2R 25286936 2R 9048467..9048537 893..823 355 100 Minus
2R 25286936 2R 9056573..9056636 145..82 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:08:20 has no hits.

BS11265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:09 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 1..1587 17..1603 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:14 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 280..1864 17..1601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:19 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 281..1865 17..1601 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:09 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 274..1869 10..1609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:51 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 281..1865 17..1601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:51 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9046508..9046748 1361..1601 100 <- Minus
2R 9047658..9047849 1169..1360 100 <- Minus
2R 9047914..9048026 1056..1168 100 <- Minus
2R 9048176..9048337 894..1055 100 <- Minus
2R 9048467..9048537 823..893 100 <- Minus
2R 9049880..9050132 570..822 100 <- Minus
2R 9050515..9050629 455..569 99 <- Minus
2R 9050843..9051151 146..454 99 <- Minus
2R 9056573..9056632 86..145 100 <- Minus
2R 9059255..9059323 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:19 Download gff for BS11265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4934013..4934253 1361..1601 100 <- Minus
arm_2R 4935163..4935354 1169..1360 100 <- Minus
arm_2R 4935419..4935531 1056..1168 100 <- Minus
arm_2R 4935681..4935842 894..1055 100 <- Minus
arm_2R 4935972..4936042 823..893 100 <- Minus
arm_2R 4937385..4937637 570..822 100 <- Minus
arm_2R 4938020..4938134 455..569 99 <- Minus
arm_2R 4938348..4938656 146..454 99 <- Minus
arm_2R 4944078..4944137 86..145 100 <- Minus
arm_2R 4946760..4946828 17..85 100   Minus

BS11265.pep Sequence

Translation from 16 to 1602

> BS11265.pep
MNMNMNDSRRNTATEFSYILQRQGSDVSVAEAYAFDDFNNIMKNNHQTHQ
QQGQPQQPHQQQQQPPQQQQQQQHRQHSQQQQQAQQDAGLGDTLSSLPQA
SFNYINSIVGSGVIGIPYALHRAGFGLGLALLILVAYITDYSLILMVRCG
HICGRFSYPGIMEAAYGKYGYYLLSLLQFMYPFLAMISYNVVVGDTLSKV
LVRFFPSWGGSMGAVRLGVVFFVNVGVVMPLCLYKNVSRLARASFISLAC
VVFILFAVIIKLMSGDYKVTDTAESWRFANSDLIPATGIMVFAFMCHHNT
FLVYQSMRDATMERWEKVTHISIGFAWTVAALFGIAGYSTFRALSQGDLL
ENYCWDDDLMNFSRVLFSISILLTFPIECFVSREIVRALVHRFVLKEPIS
EFTQDKDPSLEKGAIIDEYSKAITMAIVFSAFVISPMTDCLGSVLELNGL
LAAIPLAYILPGLAYIQMEPHALLSREKLPALGLVVFGALVTILGAAVLL
PGLMGGDCRSDIVMGYCRQEFQNTTSSN*

BS11265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-PA 528 CG13743-PA 1..528 1..528 2725 100 Plus
CG13743-PB 508 CG13743-PB 1..508 1..528 2592 96.2 Plus
CG13743-PC 258 CG13743-PC 1..254 1..274 1262 91.2 Plus
CG30394-PB 831 CG30394-PB 13..387 106..495 207 21.7 Plus
CG30394-PA 831 CG30394-PA 13..387 106..495 207 21.7 Plus