Clone BS11269 Report

Search the DGRC for BS11269

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCad96Ca-RA
Protein status:BS11269.pep: full length peptide match
Sequenced Size:2354

Clone Sequence Records

BS11269.complete Sequence

2354 bp assembled on 2009-12-07

GenBank Submission: KX802429

> BS11269.complete
GAAGTTATCAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGA
TAATACACTGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTG
CTGACCATCATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGA
AGCCGAGGCCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAAC
GCAACTGGCGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGA
GTGCGGGCGGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACC
GCGATTCAGTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGA
TACCCTTTCAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGT
TTGGCAGGAAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGA
TGGCTCCTATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGC
GGGAGAATAGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTG
CACAATATATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCA
ATCCATCCGGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCAC
CGGTGCCCCAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTAC
CCACCGCCTCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGA
AGAGGAGCAGCCGGATGAGGAGGTGACACCCACAACACCCGTCAGAATCA
GCTCCACCACGCCGAAGAGTCGCACCAAACTGACGCCGATAACTGCCAAT
AATTCAACGAGAGTCGAATCCGCAATCCCCGCGGAGACAACGACACCGAG
TGGCGGCCACCATAATAATAGCTCCAGTCCCATCACAATTTTCTCCCTCA
AGTCCGGCACAATTCCGATTGTGGTCACCGTGGGCGGATTCTTTGTCGCC
ATCGCCGTGCTTCTGGCGTACTTGTGCCGCCGACGCCTCTGCGCCATCAG
CAGGACGCTAAAGAAGACCAAGGAGAAGGAGGAGCTGGCCAAGAAGTCCA
ACCAAAGCCAGCTGAGCAGCACGCTGACCGACGACAGCCGCAACTCGATG
GTCATGCAGCAGTGGCAAGGACCTGTGGCCTTCGCCAATCGCTATGTTCC
CTGGGAGCGGGATCAGCAGATGGGCATTGCAACGTCCCAGTTATCAACAG
GTGTCACCAATGGCGGAGTGTCCTCCCCCGGAGTGCCCAGTCCCGGGACA
GGTGAGCCGGGTTCCAACTTGGGCCCGGGCTGCTTGACAGGTGGAGCAGG
AAGTTCCGGCGCACCGGAAAACGCTTTTGCCGGCGAGGCCAACTGCGACC
GCTGGGAATTCCCCAGGTACCGATTGAAGTTCTTCAATATCTTGGGCGAA
GGAGCCTTCGGACAAGTTTGGCGCTGCGAGGCCACTAATATAAATGGCAA
CGAGGGCATTACAACCGTGGCTGTGAAGACGCTCAAGGAAAGTGCCACCG
AAGTGGATCGCAAGGACCTCTTATCCGAACTGGAGGTAATGAAATCTCTG
GAGCCACACATCAATGTTGTTCATTTGTTGGGCTGCTGCACGGACAAGGA
TCCCACATTTGTGATTCTGGAGTACGTGAATCGGGGAAAACTGCAAACGT
ACCTACGCAGCTCACGCGCCGAAAGGCACTATGGAAACACTCATGGAAAG
TCAAATGTACTAACGTCCTGCGACCTAACATCCTTTATGTATCAAGTAGC
TAAGGGCATGGACTACCTAACATCTCGAGGAATTATCCATCGTGACTTGG
CTGCTCGAAATATTCTCATAACCGATGATCACACTTGCAAAGTTGCGGAC
TTTGGCTTCGCACGAGATGTAATCACCTCGAAGATTTATGAAAGAAAAAG
CGAGGGCAAGCTGCCCATCAGATGGATGGCTACAGAGTCGCTATACGACA
ATATATTCTCCGTAAAGTCGGATATCTGGAGCTTCGGCATACTGATGTGG
GAAATTGTGACGCTGGGATCGACGCCCTACCCTGGCATATCAGCAGCAGA
TGTGATGCGAAAGGTGAGGGATGGATATCGTCTGGAGAAGCCCGAGCACT
GTCGTCGGGAGCTGTACAACATAATGTACTACTGCTGGTCCCACGATCCC
CAGGAGCGTCCTCTATTCGCGGAAATAATCCAAATGCTCGACAAGCTGCT
GCACACGGAAATGGATTATATCGAACTCGAGCGGTTTCCCGATCACAACT
ACTACAATATCGTTAGTCTTAGTGGTGAAAAGTTGTAGAAGCTTTCTAGA
CCAT

BS11269.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2322 CG10244-PA 1..2322 17..2338 11610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2939 CG10244-RA 210..2531 17..2338 11610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25203701..25204518 1229..412 4090 100 Minus
3R 32079331 3R 25202295..25202563 1497..1229 1345 100 Minus
3R 32079331 3R 25204582..25204844 413..151 1315 100 Minus
3R 32079331 3R 25197979..25198205 2338..2112 1135 100 Minus
3R 32079331 3R 25198267..25198414 2115..1968 740 100 Minus
3R 32079331 3R 25198838..25198980 1726..1584 715 100 Minus
3R 32079331 3R 25198474..25198613 1971..1832 700 100 Minus
3R 32079331 3R 25206913..25207048 152..17 680 100 Minus
3R 32079331 3R 25198675..25198782 1831..1724 540 100 Minus
3R 32079331 3R 25201558..25201649 1587..1496 460 100 Minus
Blast to na_te.dros performed 2014-11-28 02:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 5532..5698 1823..1985 149 58.6 Plus

BS11269.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:06 Download gff for BS11269.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 208..2529 17..2338 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:53 Download gff for BS11269.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..2531 17..2338 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:58 Download gff for BS11269.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 208..2529 17..2338 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:15 Download gff for BS11269.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..2531 17..2338 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:15 Download gff for BS11269.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25198839..25198978 1586..1725 100 <- Minus
3R 25201560..25201648 1497..1585 100 <- Minus
3R 25202296..25202563 1229..1496 100 <- Minus
3R 25197979..25198203 2114..2338 100 <- Minus
3R 25198269..25198410 1972..2113 100 <- Minus
3R 25198474..25198613 1832..1971 100 <- Minus
3R 25198675..25198780 1726..1831 100 <- Minus
3R 25203702..25204517 413..1228 100 <- Minus
3R 25204583..25204842 153..412 100 <- Minus
3R 25206913..25207048 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:53 Download gff for BS11269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21028018..21028285 1229..1496 100 <- Minus
arm_3R 21023701..21023925 2114..2338 100 <- Minus
arm_3R 21023991..21024132 1972..2113 100 <- Minus
arm_3R 21024196..21024335 1832..1971 100 <- Minus
arm_3R 21024397..21024502 1726..1831 100 <- Minus
arm_3R 21024561..21024700 1586..1725 100 <- Minus
arm_3R 21027282..21027370 1497..1585 100 <- Minus
arm_3R 21029424..21030239 413..1228 100 <- Minus
arm_3R 21030305..21030564 153..412 100 <- Minus
arm_3R 21032635..21032770 17..152 100   Minus

BS11269.3prime Sequence

802 bp (779 high quality bases) assembled on 2006-04-18

> BS11269.3prime
ATGGTCTAGAAAGCTTCTACAACTTTTCACCACTAAGACTAACGATATTG
TAGTAGTTGTGATCGGGAAACCGCTCGAGTTCGATATAATCCATTTCCGT
GTGCAGCAGCTTGTCGAGCATTTGGATTATTTCCGCGAATAGAGGACGCT
CCTGGGGATCGTGGGACCAGCAGTAGTACATTATGTTGTACAGCTCCCGA
CGACAGTGCTCGGGCTTCTCCAGACGATATCCATCCCTCACCTTTCGCAT
CACATCTGCTGCTGATATGCCAGGGTAGGGCGTCGATCCCAGCGTCACAA
TTTCCCACATCAGTATGCCGAAGCTCCAGATATCCGACTTTACGGAGAAT
ATATTGTCGTATAGCGACTCTGTAGCCATCCATCTGATGGGCAGCTTGCC
CTCGCTTTTTCTTTCATAAATCTTCGAGGTGATTACATCTCGTGCGAAGC
CAAAGTCCGCAACTTTGCAAGTGTGATCATCGGTTATGAGAATATTTCGA
GCAGCCAAGTCACGATGGATAATTCCTCGAGATGTTAGGTAGTCCATGCC
CTTAGCTACTTGATACATAAAGGATGTTAGGTCGCAGGACGTTAGTACAT
TTGACTTTCCATGAGTGTTTCCATAGTGCCTTTCGGCGCGTGAGCTGCGT
AGGTACGTTTGCAGTTTTCCCCGATTCACGTACTCCAGAATCACAAATGT
GGGATCCTTGTCCGTGCAGCAGCCCAACAAATGAACAACATTGATGTGTG
GCTCCAGAGATTTCATTACCTCCAGTTCGGATAAGAGGTCCTTGCGATCC
AC

BS11269.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10244-PA 2322 Cad96Ca-RA 1537..2322 802..17 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2939 CG10244-RA 1746..2531 802..17 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25197979..25198205 17..243 1135 100 Plus
3R 32079331 3R 25198267..25198414 240..387 740 100 Plus
3R 32079331 3R 25198838..25198980 629..771 715 100 Plus
3R 32079331 3R 25198474..25198613 384..523 700 100 Plus
3R 32079331 3R 25198675..25198782 524..631 540 100 Plus
Blast to na_te.dros performed 2015-02-07 01:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 5532..5698 532..370 149 58.6 Minus

BS11269.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:52 Download gff for BS11269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1537..2322 17..802 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:41 Download gff for BS11269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1537..2322 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:23:36 Download gff for BS11269.3prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 1746..2534 14..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:02:02 Download gff for BS11269.3prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 1746..2534 14..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:02:02 Download gff for BS11269.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25197976..25198203 14..241 99 <- Plus
3R 25198269..25198410 242..383 100 <- Plus
3R 25198474..25198613 384..523 100 <- Plus
3R 25198675..25198780 524..629 100 <- Plus
3R 25198839..25198978 630..769 100 <- Plus
3R 25201560..25201592 770..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:23:36 Download gff for BS11269.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21023698..21023925 14..241 99 <- Plus
arm_3R 21023991..21024132 242..383 100 <- Plus
arm_3R 21024196..21024335 384..523 100 <- Plus
arm_3R 21024397..21024502 524..629 100 <- Plus
arm_3R 21024561..21024700 630..769 100 <- Plus
arm_3R 21027282..21027314 770..802 100   Plus

BS11269.5prime Sequence

756 bp (740 high quality bases) assembled on 2006-04-18

> BS11269.5prime
GAAGTTATCAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGA
TAATACACTGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTG
CTGACCATCATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGA
AGCCGAGGCCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAAC
GCAACTGGCGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGA
GTGCGGGCGGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACC
GCGATTCAGTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGA
TACCCTTTCAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGT
TTGGCAGGAAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGA
TGGCTCCTATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGC
GGGAGAATAGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTG
CACAATATATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCA
ATCCATCCGGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCAC
CGGTGCCCCAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTAC
CCACCGCCTCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGA
AGAGGA

BS11269.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10244-PA 2322 Cad96Ca-RA 1..740 17..756 3700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2939 CG10244-RA 210..949 17..756 3700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25204174..25204518 756..412 1725 100 Minus
3R 32079331 3R 25204582..25204844 413..151 1315 100 Minus
3R 32079331 3R 25206913..25207048 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:45 has no hits.

BS11269.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:54 Download gff for BS11269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1..739 17..755 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:42 Download gff for BS11269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1..739 17..755 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:30 Download gff for BS11269.5prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..948 17..755 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:40 Download gff for BS11269.5prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..948 17..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:40 Download gff for BS11269.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25204175..25204517 413..755 100 <- Minus
3R 25204583..25204842 153..412 100 <- Minus
3R 25206913..25207048 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:30 Download gff for BS11269.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21029897..21030239 413..755 100 <- Minus
arm_3R 21030305..21030564 153..412 100 <- Minus
arm_3R 21032635..21032770 17..152 100   Minus

BS11269.pep Sequence

Translation from 16 to 2337

> BS11269.pep
MVYHHHNHESRIIHCRKQLTSWRRRSLLLTIIVVTATVVSLISQEAEAHN
QNAPPILYVRERNWRISETEKVGQIIDRVRAEDPDGDDLIFGIEPRFSLP
GGENDASPPEKIPFQIDRETGVVTLNESLAGRAGQNFLIYITVTDGSYTA
KNEVFINILGERENSSGYRPQTSISNVVHNISQFLPRFDQLPGVQSIRNG
LPNSRPGGWYPPVPQNNIFGPPPFGNNYPPPPPNIPGVRGEQSGEEEQPD
EEVTPTTPVRISSTTPKSRTKLTPITANNSTRVESAIPAETTTPSGGHHN
NSSSPITIFSLKSGTIPIVVTVGGFFVAIAVLLAYLCRRRLCAISRTLKK
TKEKEELAKKSNQSQLSSTLTDDSRNSMVMQQWQGPVAFANRYVPWERDQ
QMGIATSQLSTGVTNGGVSSPGVPSPGTGEPGSNLGPGCLTGGAGSSGAP
ENAFAGEANCDRWEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGITT
VAVKTLKESATEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDKDPTFVI
LEYVNRGKLQTYLRSSRAERHYGNTHGKSNVLTSCDLTSFMYQVAKGMDY
LTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKSEGKLP
IRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISAADVMRKV
RDGYRLEKPEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEMD
YIELERFPDHNYYNIVSLSGEKL*

BS11269.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-PA 773 CG10244-PA 1..773 1..773 4087 100 Plus
htl-PC 729 CG7223-PC 392..702 445..755 686 42.5 Plus
htl-PA 729 CG7223-PA 392..702 445..755 686 42.5 Plus
htl-PB 729 CG7223-PB 392..702 445..755 686 42.5 Plus
Ret-PA 1235 CG14396-PA 741..1056 441..755 684 42.5 Plus