Clone Sequence Records
BS11269.complete Sequence
2354 bp assembled on 2009-12-07
GenBank Submission: KX802429
> BS11269.complete
GAAGTTATCAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGA
TAATACACTGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTG
CTGACCATCATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGA
AGCCGAGGCCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAAC
GCAACTGGCGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGA
GTGCGGGCGGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACC
GCGATTCAGTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGA
TACCCTTTCAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGT
TTGGCAGGAAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGA
TGGCTCCTATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGC
GGGAGAATAGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTG
CACAATATATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCA
ATCCATCCGGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCAC
CGGTGCCCCAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTAC
CCACCGCCTCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGA
AGAGGAGCAGCCGGATGAGGAGGTGACACCCACAACACCCGTCAGAATCA
GCTCCACCACGCCGAAGAGTCGCACCAAACTGACGCCGATAACTGCCAAT
AATTCAACGAGAGTCGAATCCGCAATCCCCGCGGAGACAACGACACCGAG
TGGCGGCCACCATAATAATAGCTCCAGTCCCATCACAATTTTCTCCCTCA
AGTCCGGCACAATTCCGATTGTGGTCACCGTGGGCGGATTCTTTGTCGCC
ATCGCCGTGCTTCTGGCGTACTTGTGCCGCCGACGCCTCTGCGCCATCAG
CAGGACGCTAAAGAAGACCAAGGAGAAGGAGGAGCTGGCCAAGAAGTCCA
ACCAAAGCCAGCTGAGCAGCACGCTGACCGACGACAGCCGCAACTCGATG
GTCATGCAGCAGTGGCAAGGACCTGTGGCCTTCGCCAATCGCTATGTTCC
CTGGGAGCGGGATCAGCAGATGGGCATTGCAACGTCCCAGTTATCAACAG
GTGTCACCAATGGCGGAGTGTCCTCCCCCGGAGTGCCCAGTCCCGGGACA
GGTGAGCCGGGTTCCAACTTGGGCCCGGGCTGCTTGACAGGTGGAGCAGG
AAGTTCCGGCGCACCGGAAAACGCTTTTGCCGGCGAGGCCAACTGCGACC
GCTGGGAATTCCCCAGGTACCGATTGAAGTTCTTCAATATCTTGGGCGAA
GGAGCCTTCGGACAAGTTTGGCGCTGCGAGGCCACTAATATAAATGGCAA
CGAGGGCATTACAACCGTGGCTGTGAAGACGCTCAAGGAAAGTGCCACCG
AAGTGGATCGCAAGGACCTCTTATCCGAACTGGAGGTAATGAAATCTCTG
GAGCCACACATCAATGTTGTTCATTTGTTGGGCTGCTGCACGGACAAGGA
TCCCACATTTGTGATTCTGGAGTACGTGAATCGGGGAAAACTGCAAACGT
ACCTACGCAGCTCACGCGCCGAAAGGCACTATGGAAACACTCATGGAAAG
TCAAATGTACTAACGTCCTGCGACCTAACATCCTTTATGTATCAAGTAGC
TAAGGGCATGGACTACCTAACATCTCGAGGAATTATCCATCGTGACTTGG
CTGCTCGAAATATTCTCATAACCGATGATCACACTTGCAAAGTTGCGGAC
TTTGGCTTCGCACGAGATGTAATCACCTCGAAGATTTATGAAAGAAAAAG
CGAGGGCAAGCTGCCCATCAGATGGATGGCTACAGAGTCGCTATACGACA
ATATATTCTCCGTAAAGTCGGATATCTGGAGCTTCGGCATACTGATGTGG
GAAATTGTGACGCTGGGATCGACGCCCTACCCTGGCATATCAGCAGCAGA
TGTGATGCGAAAGGTGAGGGATGGATATCGTCTGGAGAAGCCCGAGCACT
GTCGTCGGGAGCTGTACAACATAATGTACTACTGCTGGTCCCACGATCCC
CAGGAGCGTCCTCTATTCGCGGAAATAATCCAAATGCTCGACAAGCTGCT
GCACACGGAAATGGATTATATCGAACTCGAGCGGTTTCCCGATCACAACT
ACTACAATATCGTTAGTCTTAGTGGTGAAAAGTTGTAGAAGCTTTCTAGA
CCAT
BS11269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cad96Ca-RA | 2322 | CG10244-PA | 1..2322 | 17..2338 | 11610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cad96Ca-RA | 2939 | CG10244-RA | 210..2531 | 17..2338 | 11610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25203701..25204518 | 1229..412 | 4090 | 100 | Minus |
3R | 32079331 | 3R | 25202295..25202563 | 1497..1229 | 1345 | 100 | Minus |
3R | 32079331 | 3R | 25204582..25204844 | 413..151 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 25197979..25198205 | 2338..2112 | 1135 | 100 | Minus |
3R | 32079331 | 3R | 25198267..25198414 | 2115..1968 | 740 | 100 | Minus |
3R | 32079331 | 3R | 25198838..25198980 | 1726..1584 | 715 | 100 | Minus |
3R | 32079331 | 3R | 25198474..25198613 | 1971..1832 | 700 | 100 | Minus |
3R | 32079331 | 3R | 25206913..25207048 | 152..17 | 680 | 100 | Minus |
3R | 32079331 | 3R | 25198675..25198782 | 1831..1724 | 540 | 100 | Minus |
3R | 32079331 | 3R | 25201558..25201649 | 1587..1496 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver | 6112 | diver Tinker 6112bp | 5532..5698 | 1823..1985 | 149 | 58.6 | Plus |
BS11269.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:06 Download gff for
BS11269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 208..2529 | 17..2338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:53 Download gff for
BS11269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 210..2531 | 17..2338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:58 Download gff for
BS11269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 208..2529 | 17..2338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:15 Download gff for
BS11269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 210..2531 | 17..2338 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:15 Download gff for
BS11269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25198839..25198978 | 1586..1725 | 100 | <- | Minus |
3R | 25201560..25201648 | 1497..1585 | 100 | <- | Minus |
3R | 25202296..25202563 | 1229..1496 | 100 | <- | Minus |
3R | 25197979..25198203 | 2114..2338 | 100 | <- | Minus |
3R | 25198269..25198410 | 1972..2113 | 100 | <- | Minus |
3R | 25198474..25198613 | 1832..1971 | 100 | <- | Minus |
3R | 25198675..25198780 | 1726..1831 | 100 | <- | Minus |
3R | 25203702..25204517 | 413..1228 | 100 | <- | Minus |
3R | 25204583..25204842 | 153..412 | 100 | <- | Minus |
3R | 25206913..25207048 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:53 Download gff for
BS11269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21028018..21028285 | 1229..1496 | 100 | <- | Minus |
arm_3R | 21023701..21023925 | 2114..2338 | 100 | <- | Minus |
arm_3R | 21023991..21024132 | 1972..2113 | 100 | <- | Minus |
arm_3R | 21024196..21024335 | 1832..1971 | 100 | <- | Minus |
arm_3R | 21024397..21024502 | 1726..1831 | 100 | <- | Minus |
arm_3R | 21024561..21024700 | 1586..1725 | 100 | <- | Minus |
arm_3R | 21027282..21027370 | 1497..1585 | 100 | <- | Minus |
arm_3R | 21029424..21030239 | 413..1228 | 100 | <- | Minus |
arm_3R | 21030305..21030564 | 153..412 | 100 | <- | Minus |
arm_3R | 21032635..21032770 | 17..152 | 100 | | Minus |
BS11269.3prime Sequence
802 bp (779 high quality bases) assembled on 2006-04-18
> BS11269.3prime
ATGGTCTAGAAAGCTTCTACAACTTTTCACCACTAAGACTAACGATATTG
TAGTAGTTGTGATCGGGAAACCGCTCGAGTTCGATATAATCCATTTCCGT
GTGCAGCAGCTTGTCGAGCATTTGGATTATTTCCGCGAATAGAGGACGCT
CCTGGGGATCGTGGGACCAGCAGTAGTACATTATGTTGTACAGCTCCCGA
CGACAGTGCTCGGGCTTCTCCAGACGATATCCATCCCTCACCTTTCGCAT
CACATCTGCTGCTGATATGCCAGGGTAGGGCGTCGATCCCAGCGTCACAA
TTTCCCACATCAGTATGCCGAAGCTCCAGATATCCGACTTTACGGAGAAT
ATATTGTCGTATAGCGACTCTGTAGCCATCCATCTGATGGGCAGCTTGCC
CTCGCTTTTTCTTTCATAAATCTTCGAGGTGATTACATCTCGTGCGAAGC
CAAAGTCCGCAACTTTGCAAGTGTGATCATCGGTTATGAGAATATTTCGA
GCAGCCAAGTCACGATGGATAATTCCTCGAGATGTTAGGTAGTCCATGCC
CTTAGCTACTTGATACATAAAGGATGTTAGGTCGCAGGACGTTAGTACAT
TTGACTTTCCATGAGTGTTTCCATAGTGCCTTTCGGCGCGTGAGCTGCGT
AGGTACGTTTGCAGTTTTCCCCGATTCACGTACTCCAGAATCACAAATGT
GGGATCCTTGTCCGTGCAGCAGCCCAACAAATGAACAACATTGATGTGTG
GCTCCAGAGATTTCATTACCTCCAGTTCGGATAAGAGGTCCTTGCGATCC
AC
BS11269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10244-PA | 2322 | Cad96Ca-RA | 1537..2322 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cad96Ca-RA | 2939 | CG10244-RA | 1746..2531 | 802..17 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25197979..25198205 | 17..243 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 25198267..25198414 | 240..387 | 740 | 100 | Plus |
3R | 32079331 | 3R | 25198838..25198980 | 629..771 | 715 | 100 | Plus |
3R | 32079331 | 3R | 25198474..25198613 | 384..523 | 700 | 100 | Plus |
3R | 32079331 | 3R | 25198675..25198782 | 524..631 | 540 | 100 | Plus |
Blast to na_te.dros performed 2015-02-07 01:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver | 6112 | diver Tinker 6112bp | 5532..5698 | 532..370 | 149 | 58.6 | Minus |
BS11269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:52 Download gff for
BS11269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10244-PA | 1537..2322 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:41 Download gff for
BS11269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10244-PA | 1537..2322 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:23:36 Download gff for
BS11269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 1746..2534 | 14..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:02:02 Download gff for
BS11269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 1746..2534 | 14..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:02:02 Download gff for
BS11269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25197976..25198203 | 14..241 | 99 | <- | Plus |
3R | 25198269..25198410 | 242..383 | 100 | <- | Plus |
3R | 25198474..25198613 | 384..523 | 100 | <- | Plus |
3R | 25198675..25198780 | 524..629 | 100 | <- | Plus |
3R | 25198839..25198978 | 630..769 | 100 | <- | Plus |
3R | 25201560..25201592 | 770..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:23:36 Download gff for
BS11269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21023698..21023925 | 14..241 | 99 | <- | Plus |
arm_3R | 21023991..21024132 | 242..383 | 100 | <- | Plus |
arm_3R | 21024196..21024335 | 384..523 | 100 | <- | Plus |
arm_3R | 21024397..21024502 | 524..629 | 100 | <- | Plus |
arm_3R | 21024561..21024700 | 630..769 | 100 | <- | Plus |
arm_3R | 21027282..21027314 | 770..802 | 100 | | Plus |
BS11269.5prime Sequence
756 bp (740 high quality bases) assembled on 2006-04-18
> BS11269.5prime
GAAGTTATCAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGA
TAATACACTGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTG
CTGACCATCATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGA
AGCCGAGGCCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAAC
GCAACTGGCGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGA
GTGCGGGCGGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACC
GCGATTCAGTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGA
TACCCTTTCAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGT
TTGGCAGGAAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGA
TGGCTCCTATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGC
GGGAGAATAGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTG
CACAATATATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCA
ATCCATCCGGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCAC
CGGTGCCCCAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTAC
CCACCGCCTCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGA
AGAGGA
BS11269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10244-PA | 2322 | Cad96Ca-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cad96Ca-RA | 2939 | CG10244-RA | 210..949 | 17..756 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25204174..25204518 | 756..412 | 1725 | 100 | Minus |
3R | 32079331 | 3R | 25204582..25204844 | 413..151 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 25206913..25207048 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:45 has no hits.
BS11269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:54 Download gff for
BS11269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10244-PA | 1..739 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:42 Download gff for
BS11269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10244-PA | 1..739 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:30 Download gff for
BS11269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 210..948 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:40 Download gff for
BS11269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cad96Ca-RA | 210..948 | 17..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:40 Download gff for
BS11269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25204175..25204517 | 413..755 | 100 | <- | Minus |
3R | 25204583..25204842 | 153..412 | 100 | <- | Minus |
3R | 25206913..25207048 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:30 Download gff for
BS11269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21029897..21030239 | 413..755 | 100 | <- | Minus |
arm_3R | 21030305..21030564 | 153..412 | 100 | <- | Minus |
arm_3R | 21032635..21032770 | 17..152 | 100 | | Minus |
BS11269.pep Sequence
Translation from 16 to 2337
> BS11269.pep
MVYHHHNHESRIIHCRKQLTSWRRRSLLLTIIVVTATVVSLISQEAEAHN
QNAPPILYVRERNWRISETEKVGQIIDRVRAEDPDGDDLIFGIEPRFSLP
GGENDASPPEKIPFQIDRETGVVTLNESLAGRAGQNFLIYITVTDGSYTA
KNEVFINILGERENSSGYRPQTSISNVVHNISQFLPRFDQLPGVQSIRNG
LPNSRPGGWYPPVPQNNIFGPPPFGNNYPPPPPNIPGVRGEQSGEEEQPD
EEVTPTTPVRISSTTPKSRTKLTPITANNSTRVESAIPAETTTPSGGHHN
NSSSPITIFSLKSGTIPIVVTVGGFFVAIAVLLAYLCRRRLCAISRTLKK
TKEKEELAKKSNQSQLSSTLTDDSRNSMVMQQWQGPVAFANRYVPWERDQ
QMGIATSQLSTGVTNGGVSSPGVPSPGTGEPGSNLGPGCLTGGAGSSGAP
ENAFAGEANCDRWEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGITT
VAVKTLKESATEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDKDPTFVI
LEYVNRGKLQTYLRSSRAERHYGNTHGKSNVLTSCDLTSFMYQVAKGMDY
LTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKSEGKLP
IRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISAADVMRKV
RDGYRLEKPEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEMD
YIELERFPDHNYYNIVSLSGEKL*
BS11269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cad96Ca-PA | 773 | CG10244-PA | 1..773 | 1..773 | 4087 | 100 | Plus |
htl-PC | 729 | CG7223-PC | 392..702 | 445..755 | 686 | 42.5 | Plus |
htl-PA | 729 | CG7223-PA | 392..702 | 445..755 | 686 | 42.5 | Plus |
htl-PB | 729 | CG7223-PB | 392..702 | 445..755 | 686 | 42.5 | Plus |
Ret-PA | 1235 | CG14396-PA | 741..1056 | 441..755 | 684 | 42.5 | Plus |