Clone BS11271 Report

Search the DGRC for BS11271

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCpr97Eb-RA
Protein status:BS11271.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11271.3prime Sequence

203 bp (202 high quality bases) assembled on 2006-04-18

> BS11271.3prime
ATGGTCTAGAAAGCTTCTACTTCCGGCCCGTATAGTCGATGCTATAGGAA
CCGGTGTAGAGGTTGAGATTTCGCAGGGAGGGATGATGTTGCTCCGGCAA
CCCCCTGTATGGCTGTTGCTGCTGGGGATTATAGTAGTTCTGGGCCGGAG
GCTGGTAGTAACGGGGCTGCGGAGCCGGGGGATTGTAGTATTGGGGTGTG
GGA

BS11271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15884-PA 708 CG15884-RA 522..708 203..17 935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 1054 CG15884-RA 661..847 203..17 935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27089911..27090097 17..203 935 100 Plus
Blast to na_te.dros performed 2015-02-11 11:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1585..1643 125..67 106 64.4 Minus

BS11271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:55 Download gff for BS11271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 523..708 17..202 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:43 Download gff for BS11271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 523..708 17..202 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:42:10 Download gff for BS11271.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 662..851 14..202 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:57 Download gff for BS11271.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 662..851 14..202 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:57 Download gff for BS11271.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27089907..27090096 14..202 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:42:10 Download gff for BS11271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22915629..22915818 14..202 99   Plus

BS11271.5prime Sequence

738 bp (737 high quality bases) assembled on 2006-04-18

> BS11271.5prime
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGTAGAAGCTTTCTAGACC

BS11271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15884-PA 708 CG15884-RA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 1054 CG15884-RA 139..847 16..724 3545 100 Plus
Cpr97Ea-RB 1502 CG6131-RB 436..614 110..288 235 76.1 Plus
Cpr97Ea-RA 1514 CG6131-RA 448..626 110..288 235 76.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27089911..27090607 724..28 3485 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:23:33 has no hits.

BS11271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:56 Download gff for BS11271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:45 Download gff for BS11271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:47 Download gff for BS11271.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 139..851 16..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:48 Download gff for BS11271.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 139..851 16..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:20:48 Download gff for BS11271.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27089907..27090606 29..727 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:47 Download gff for BS11271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22915629..22916328 29..727 99 <- Minus

BS11271.complete Sequence

740 bp assembled on 2006-11-01

GenBank Submission: FJ636803

> BS11271.complete
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGTAGAAGCTTTCTAGACCAT

BS11271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 708 CG15884-PA 1..708 17..724 3540 100 Plus
Cpr97Ea-RB 1092 CG6131-PB 169..347 110..288 235 75.4 Plus
Cpr97Ea-RA 1101 CG6131-PA 178..356 110..288 235 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 1054 CG15884-RA 139..847 16..724 3545 100 Plus
Cpr97Ea-RB 1502 CG6131-RB 436..614 110..288 235 75.4 Plus
Cpr97Ea-RA 1514 CG6131-RA 448..626 110..288 235 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27089911..27090607 724..28 3485 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:46:28 has no hits.

BS11271.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:10 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:30 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 132..844 16..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:04 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 145..847 22..724 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:10 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 132..844 16..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:14 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 145..847 22..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:14 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27089911..27090610 22..724 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:04 Download gff for BS11271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22915633..22916332 22..724 99   Minus

BS11271.pep Sequence

Translation from 16 to 723

> BS11271.pep
MLKLTLSLGLLLLAAHSAYAQHQDYTTPVPILKQIDKHNDDGSYTYGYEA
ADKSFKIETKYANGEVYGKYGYVDDQGKVREIEYGASKRGFEPAGSHINV
PPPTLTNSNPYPLGPNELDDGQYREDPSVYYKDQKFNRPLSPASKFSLND
FGRGQQQAYAPPPRQPAPQTPYYNPTPQYYNPPAPQPRYYQPPAQNYYNP
QQQQPYRGLPEQHHPSLRNLNLYTGSYSIDYTGRK*

BS11271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-PA 235 CG15884-PA 1..235 1..235 1297 100 Plus
Cpr97Ea-PB 363 CG6131-PB 35..212 11..214 352 43.9 Plus
Cpr97Ea-PA 366 CG6131-PA 38..215 11..214 352 43.9 Plus
Cpr100A-PA 241 CG12045-PA 10..221 12..210 227 33.6 Plus