Clone Sequence Records
BS11271.3prime Sequence
203 bp (202 high quality bases) assembled on 2006-04-18
> BS11271.3prime
ATGGTCTAGAAAGCTTCTACTTCCGGCCCGTATAGTCGATGCTATAGGAA
CCGGTGTAGAGGTTGAGATTTCGCAGGGAGGGATGATGTTGCTCCGGCAA
CCCCCTGTATGGCTGTTGCTGCTGGGGATTATAGTAGTTCTGGGCCGGAG
GCTGGTAGTAACGGGGCTGCGGAGCCGGGGGATTGTAGTATTGGGGTGTG
GGA
BS11271.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15884-PA | 708 | CG15884-RA | 522..708 | 203..17 | 935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 1054 | CG15884-RA | 661..847 | 203..17 | 935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27089911..27090097 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1585..1643 | 125..67 | 106 | 64.4 | Minus |
BS11271.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:55 Download gff for
BS11271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 523..708 | 17..202 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:43 Download gff for
BS11271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 523..708 | 17..202 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:42:10 Download gff for
BS11271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 662..851 | 14..202 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:57 Download gff for
BS11271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 662..851 | 14..202 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:57 Download gff for
BS11271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27089907..27090096 | 14..202 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:42:10 Download gff for
BS11271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22915629..22915818 | 14..202 | 99 | | Plus |
BS11271.5prime Sequence
738 bp (737 high quality bases) assembled on 2006-04-18
> BS11271.5prime
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGTAGAAGCTTTCTAGACC
BS11271.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15884-PA | 708 | CG15884-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 1054 | CG15884-RA | 139..847 | 16..724 | 3545 | 100 | Plus |
Cpr97Ea-RB | 1502 | CG6131-RB | 436..614 | 110..288 | 235 | 76.1 | Plus |
Cpr97Ea-RA | 1514 | CG6131-RA | 448..626 | 110..288 | 235 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27089911..27090607 | 724..28 | 3485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:23:33 has no hits.
BS11271.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:56 Download gff for
BS11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:45 Download gff for
BS11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:47 Download gff for
BS11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 139..851 | 16..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:48 Download gff for
BS11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 139..851 | 16..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:20:48 Download gff for
BS11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27089907..27090606 | 29..727 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:47 Download gff for
BS11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22915629..22916328 | 29..727 | 99 | <- | Minus |
BS11271.complete Sequence
740 bp assembled on 2006-11-01
GenBank Submission: FJ636803
> BS11271.complete
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGTAGAAGCTTTCTAGACCAT
BS11271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 708 | CG15884-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Cpr97Ea-RB | 1092 | CG6131-PB | 169..347 | 110..288 | 235 | 75.4 | Plus |
Cpr97Ea-RA | 1101 | CG6131-PA | 178..356 | 110..288 | 235 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 1054 | CG15884-RA | 139..847 | 16..724 | 3545 | 100 | Plus |
Cpr97Ea-RB | 1502 | CG6131-RB | 436..614 | 110..288 | 235 | 75.4 | Plus |
Cpr97Ea-RA | 1514 | CG6131-RA | 448..626 | 110..288 | 235 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27089911..27090607 | 724..28 | 3485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:46:28 has no hits.
BS11271.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:10 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:30 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 132..844 | 16..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:04 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 145..847 | 22..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:10 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 132..844 | 16..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:14 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 145..847 | 22..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:14 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27089911..27090610 | 22..724 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:04 Download gff for
BS11271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22915633..22916332 | 22..724 | 99 | | Minus |
BS11271.pep Sequence
Translation from 16 to 723
> BS11271.pep
MLKLTLSLGLLLLAAHSAYAQHQDYTTPVPILKQIDKHNDDGSYTYGYEA
ADKSFKIETKYANGEVYGKYGYVDDQGKVREIEYGASKRGFEPAGSHINV
PPPTLTNSNPYPLGPNELDDGQYREDPSVYYKDQKFNRPLSPASKFSLND
FGRGQQQAYAPPPRQPAPQTPYYNPTPQYYNPPAPQPRYYQPPAQNYYNP
QQQQPYRGLPEQHHPSLRNLNLYTGSYSIDYTGRK*
BS11271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-PA | 235 | CG15884-PA | 1..235 | 1..235 | 1297 | 100 | Plus |
Cpr97Ea-PB | 363 | CG6131-PB | 35..212 | 11..214 | 352 | 43.9 | Plus |
Cpr97Ea-PA | 366 | CG6131-PA | 38..215 | 11..214 | 352 | 43.9 | Plus |
Cpr100A-PA | 241 | CG12045-PA | 10..221 | 12..210 | 227 | 33.6 | Plus |