Clone BS11274 Report

Search the DGRC for BS11274

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG31810-RA
Protein status:BS11274.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11274.3prime Sequence

813 bp (767 high quality bases) assembled on 2006-04-18

> BS11274.3prime
ATGGTCTAGAAAGCTTCTAAGAAAGTTTTTGGTTTTTCAGTCTGTGCTCC
ATGGCCTCGATTCTCATTCGTTTAAAGAGTTGGTATCCGAAGTAAGTACG
AATATCCATGGGAGCCAACTTCATGAAGGCGTACTGTAATCCATGAACCC
AGAAACCGTTGGTCTCGCTCGTCTTTCCCAGTGTAAAGACTGCGGACCGG
GCATAGGAATAAGCGTTGGGGAAAAGCAGTCCTCCTTGCCTCACTTTATC
GGAATAGGAATTCATATTGGTGGCCACAAAGGCTGGCATAACCAACTGCA
CATGGATATTGTGTTCGGCCACCTCATATTCTAAACCTTTAGTAAAATGG
GTAACGAACTTCTTGGTAGCCGCATAAGCAGTCAAATTGGGATGGGGCTG
GAGTTCGGAGGAGGATCCGAGGTTAACAATTGCTCCCTTTCGACGACTAA
TCATCTGGGGCAGGATCTTGCGGGTGAGCATGGTAACCGATCCCACGTTG
ACGGTGAGAAGGTCCCACAACATGTCCTCCGATACCTTGTCAAGGCTTTC
CGGGTCGTGAATCGTGCCCACATTGTTGACCAAAATTCCAACTTCGATTC
CATTCAGTTCCTTTTCGATATGAGCGTACACCTCGCGTCCCTTTGCAAAG
TCCGCAACAATCCACTTGATTTTCACATTATATTGGCTCCCAATCTCGTT
GGTGACTGCAATCAGCTTTTCCTCTTTCCGCGAAACGAGCACCAGGTTAA
GACCCTGACGAGCCAACTCCCTGGCATATTCCTTTCCGATTCCATCGGCC
GCACCGGGCACCA

BS11274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-PA 975 CG31810-RA 179..975 813..17 3935 99.7 Minus
CG31809-PA 702 CG31809-RA 139..702 580..17 2645 98.7 Minus
CG31809-PA 702 CG31809-RA 17..139 813..691 565 98.3 Minus
CG13284-PA 978 CG13284-RA 482..599 513..396 315 90.6 Minus
CG13284-PB 1020 CG13284-RB 524..641 513..396 315 90.6 Minus
CG13284-PA 978 CG13284-RA 792..846 203..149 200 94.5 Minus
CG13284-PB 1020 CG13284-RB 834..888 203..149 200 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-RA 1138 CG31810-RA 215..1011 813..17 3955 99.7 Minus
CG31809-RC 1186 CG31809-RC 264..1060 813..17 3850 98.9 Minus
CG31809-RB 1338 CG31809-RB 416..1212 813..17 3850 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16849395..16849841 134..580 2235 100 Plus
2L 23513712 2L 16853953..16854399 134..580 2235 100 Plus
2L 23513712 2L 16843528..16843896 149..517 810 81.3 Plus
2L 23513712 2L 16849145..16849268 17..140 620 100 Plus
2L 23513712 2L 16850149..16850280 682..813 600 97 Plus
2L 23513712 2L 16854707..16854838 682..813 600 97 Plus
2L 23513712 2L 16849984..16850095 580..691 560 100 Plus
2L 23513712 2L 16854542..16854653 580..691 560 100 Plus
2L 23513712 2L 16853746..16853869 17..140 515 94.4 Plus
2L 23513712 2L 16844678..16844786 690..798 260 82.6 Plus
2L 23513712 2L 16844509..16844618 580..689 250 81.8 Plus
2L 23513712 2L 16843306..16843400 45..139 205 81.1 Plus
Blast to na_te.dros performed on 2015-02-10 23:06:29 has no hits.

BS11274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:02 Download gff for BS11274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-PA 180..975 17..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:52 Download gff for BS11274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-PA 180..975 17..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:51:58 Download gff for BS11274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 216..1019 6..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:55 Download gff for BS11274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 216..1019 6..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:55 Download gff for BS11274.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16849137..16849261 6..133 96 <- Plus
2L 16849395..16849840 134..579 100 <- Plus
2L 16849984..16850094 580..690 100 <- Plus
2L 16850158..16850279 691..812 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:51:58 Download gff for BS11274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16849137..16849261 6..133 96 <- Plus
arm_2L 16849395..16849840 134..579 100 <- Plus
arm_2L 16849984..16850094 580..690 100 <- Plus
arm_2L 16850158..16850279 691..812 98   Plus

BS11274.5prime Sequence

851 bp (728 high quality bases) assembled on 2006-04-18

> BS11274.5prime
GAAGTTATCAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAA
TCTACATAGTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTA
AAGTCCTTGTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCC
GAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGA
CCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGT
CAGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGC
AGTCACCAACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTG
TTGCGGACTTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAA
CTGAATGGAATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCA
CGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTC
TCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCC
CAGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTC
CGAACTCCAGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGT
TCGTTACCCATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAAT
ATCCATGTGCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTC
CTATTCCGATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATT
CCTATGGCCGGTCCGCAGTCTTTACACTGGGAAAGACGAACGAGACCAAC
G

BS11274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-PA 975 CG31810-RA 1..835 17..851 4125 99.7 Plus
CG31809-PA 702 CG31809-RA 139..562 428..851 2070 99.5 Plus
CG31809-PA 702 CG31809-RA 17..139 195..317 615 100 Plus
CG13284-PA 978 CG13284-RA 482..599 495..612 315 90.6 Plus
CG13284-PB 1020 CG13284-RB 524..641 495..612 315 90.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-RA 1138 CG31810-RA 35..871 15..851 4155 99.8 Plus
CG31809-RC 1186 CG31809-RC 119..920 50..851 3935 99.4 Plus
CG31809-RB 1338 CG31809-RB 271..1072 50..851 3935 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16849418..16849841 851..428 2090 99.5 Minus
2L 23513712 2L 16853976..16854399 851..428 2090 99.5 Minus
2L 23513712 2L 16852155..16852334 194..15 900 100 Minus
2L 23513712 2L 16843536..16843896 851..491 740 80.3 Minus
2L 23513712 2L 16858300..16858444 194..50 680 97.9 Minus
2L 23513712 2L 16850149..16850282 326..193 640 98.5 Minus
2L 23513712 2L 16854707..16854840 326..193 640 98.5 Minus
2L 23513712 2L 16849984..16850095 428..317 560 100 Minus
2L 23513712 2L 16854542..16854653 428..317 560 100 Minus
2L 23513712 2L 16844678..16844803 318..193 300 82.5 Minus
2L 23513712 2L 16844509..16844618 428..319 250 81.8 Minus
Blast to na_te.dros performed on 2015-02-11 10:41:20 has no hits.

BS11274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:03 Download gff for BS11274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:54 Download gff for BS11274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:08:20 Download gff for BS11274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 29..871 10..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:44 Download gff for BS11274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 29..871 10..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:44 Download gff for BS11274.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16849418..16849840 429..851 99 <- Minus
2L 16849984..16850094 318..428 100 <- Minus
2L 16850158..16850280 195..317 100 <- Minus
2L 16852155..16852340 10..194 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:08:20 Download gff for BS11274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16849984..16850094 318..428 100 <- Minus
arm_2L 16850158..16850280 195..317 100 <- Minus
arm_2L 16849418..16849840 429..851 99 <- Minus
arm_2L 16852155..16852340 10..194 98   Minus

BS11274.complete Sequence

1007 bp assembled on 2006-11-01

GenBank Submission: FJ636804

> BS11274.complete
GAAGTTATCAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAA
TCTACATAGTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTA
AAGTCCTTGTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCC
GAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGA
CCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGT
CAGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGC
AGTCACCAACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTG
TTGCGGACTTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAA
CTGAATGGAATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCA
CGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTC
TCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCC
CAGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTC
CGAACTCCAGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGT
TCGTTACCCATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAAT
ATCCATGTGCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTC
CTATTCCGATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATT
CCTATGCCCGGTCCGCAGTCTTTACACTGGGAAAGACGAGCGAGACCAAC
GGTTTCTGGGTTCATGGATTACAGTACGCCTTCATGAAGTTGGCTCCCAT
GGATATTCGTACTTACTTCGGATACCAACTCTTTAAACGAATGAGAATCG
AGGCCATGGAGCACAGACTGAAAAACCAAAAACTTTCTTAGAAGCTTTCT
AGACCAT

BS11274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-RA 975 CG31810-PA 1..975 17..991 4875 100 Plus
CG31809-RC 951 CG31809-PC 10..951 50..991 4560 98.9 Plus
CG31809-RB 951 CG31809-PB 10..951 50..991 4560 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-RA 1138 CG31810-RA 35..1011 15..991 4885 100 Plus
CG31809-RC 1186 CG31809-RC 119..1060 50..991 4560 98.9 Plus
CG31809-RB 1338 CG31809-RB 271..1212 50..991 4560 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16849395..16849841 874..428 2235 100 Minus
2L 23513712 2L 16853953..16854399 874..428 2235 100 Minus
2L 23513712 2L 16852155..16852334 194..15 900 100 Minus
2L 23513712 2L 16843528..16843896 859..491 810 81.3 Minus
2L 23513712 2L 16858300..16858444 194..50 680 97.9 Minus
2L 23513712 2L 16850149..16850282 326..193 640 98.5 Minus
2L 23513712 2L 16854707..16854840 326..193 640 98.5 Minus
2L 23513712 2L 16849145..16849268 991..868 620 100 Minus
2L 23513712 2L 16849984..16850095 428..317 560 100 Minus
2L 23513712 2L 16854542..16854653 428..317 560 100 Minus
2L 23513712 2L 16853746..16853869 991..868 515 94.4 Minus
2L 23513712 2L 16844678..16844803 318..193 300 82.5 Minus
2L 23513712 2L 16844509..16844618 428..319 250 81.8 Minus
2L 23513712 2L 16843306..16843400 963..869 205 81.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:14:03 has no hits.

BS11274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:53 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 1..975 17..991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:29 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 27..1017 10..1002 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:29 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 37..1011 17..991 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:53 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 27..1017 10..1002 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:18 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 37..1011 17..991 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:18 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16849145..16849261 875..991 100 <- Minus
2L 16849395..16849840 429..874 100 <- Minus
2L 16849984..16850094 318..428 100 <- Minus
2L 16850158..16850280 195..317 100 <- Minus
2L 16852155..16852332 17..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:29 Download gff for BS11274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16849145..16849261 875..991 100 <- Minus
arm_2L 16849395..16849840 429..874 100 <- Minus
arm_2L 16849984..16850094 318..428 100 <- Minus
arm_2L 16850158..16850280 195..317 100 <- Minus
arm_2L 16852155..16852332 17..194 100   Minus

BS11274.pep Sequence

Translation from 16 to 990

> BS11274.pep
MALILQVISTGIYIVGSLSIVAYLYENLKSLFSIIKSVVEPFFRPNLPKT
LAEKFGNWAVVTGATDGIGKEYARELARQGLNLVLVSRKEEKLIAVTNEI
GSQYNVKIKWIVADFAKGREVYAHIEKELNGIEVGILVNNVGTIHDPESL
DKVSEDMLWDLLTVNVGSVTMLTRKILPQMISRRKGAIVNLGSSSELQPH
PNLTAYAATKKFVTHFTKGLEYEVAEHNIHVQLVMPAFVATNMNSYSDKV
RQGGLLFPNAYSYARSAVFTLGKTSETNGFWVHGLQYAFMKLAPMDIRTY
FGYQLFKRMRIEAMEHRLKNQKLS*

BS11274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-PA 324 CG31810-PA 1..324 1..324 1648 100 Plus
CG31809-PC 316 CG31809-PC 4..316 12..324 1566 98.1 Plus
CG31809-PB 316 CG31809-PB 4..316 12..324 1566 98.1 Plus
CG13284-PE 325 CG13284-PE 1..325 1..324 1281 76.3 Plus
CG13284-PA 325 CG13284-PA 1..325 1..324 1281 76.3 Plus