Clone Sequence Records
BS11274.3prime Sequence
813 bp (767 high quality bases) assembled on 2006-04-18
> BS11274.3prime
ATGGTCTAGAAAGCTTCTAAGAAAGTTTTTGGTTTTTCAGTCTGTGCTCC
ATGGCCTCGATTCTCATTCGTTTAAAGAGTTGGTATCCGAAGTAAGTACG
AATATCCATGGGAGCCAACTTCATGAAGGCGTACTGTAATCCATGAACCC
AGAAACCGTTGGTCTCGCTCGTCTTTCCCAGTGTAAAGACTGCGGACCGG
GCATAGGAATAAGCGTTGGGGAAAAGCAGTCCTCCTTGCCTCACTTTATC
GGAATAGGAATTCATATTGGTGGCCACAAAGGCTGGCATAACCAACTGCA
CATGGATATTGTGTTCGGCCACCTCATATTCTAAACCTTTAGTAAAATGG
GTAACGAACTTCTTGGTAGCCGCATAAGCAGTCAAATTGGGATGGGGCTG
GAGTTCGGAGGAGGATCCGAGGTTAACAATTGCTCCCTTTCGACGACTAA
TCATCTGGGGCAGGATCTTGCGGGTGAGCATGGTAACCGATCCCACGTTG
ACGGTGAGAAGGTCCCACAACATGTCCTCCGATACCTTGTCAAGGCTTTC
CGGGTCGTGAATCGTGCCCACATTGTTGACCAAAATTCCAACTTCGATTC
CATTCAGTTCCTTTTCGATATGAGCGTACACCTCGCGTCCCTTTGCAAAG
TCCGCAACAATCCACTTGATTTTCACATTATATTGGCTCCCAATCTCGTT
GGTGACTGCAATCAGCTTTTCCTCTTTCCGCGAAACGAGCACCAGGTTAA
GACCCTGACGAGCCAACTCCCTGGCATATTCCTTTCCGATTCCATCGGCC
GCACCGGGCACCA
BS11274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-PA | 975 | CG31810-RA | 179..975 | 813..17 | 3935 | 99.7 | Minus |
CG31809-PA | 702 | CG31809-RA | 139..702 | 580..17 | 2645 | 98.7 | Minus |
CG31809-PA | 702 | CG31809-RA | 17..139 | 813..691 | 565 | 98.3 | Minus |
CG13284-PA | 978 | CG13284-RA | 482..599 | 513..396 | 315 | 90.6 | Minus |
CG13284-PB | 1020 | CG13284-RB | 524..641 | 513..396 | 315 | 90.6 | Minus |
CG13284-PA | 978 | CG13284-RA | 792..846 | 203..149 | 200 | 94.5 | Minus |
CG13284-PB | 1020 | CG13284-RB | 834..888 | 203..149 | 200 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 215..1011 | 813..17 | 3955 | 99.7 | Minus |
CG31809-RC | 1186 | CG31809-RC | 264..1060 | 813..17 | 3850 | 98.9 | Minus |
CG31809-RB | 1338 | CG31809-RB | 416..1212 | 813..17 | 3850 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849395..16849841 | 134..580 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 16853953..16854399 | 134..580 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 16843528..16843896 | 149..517 | 810 | 81.3 | Plus |
2L | 23513712 | 2L | 16849145..16849268 | 17..140 | 620 | 100 | Plus |
2L | 23513712 | 2L | 16850149..16850280 | 682..813 | 600 | 97 | Plus |
2L | 23513712 | 2L | 16854707..16854838 | 682..813 | 600 | 97 | Plus |
2L | 23513712 | 2L | 16849984..16850095 | 580..691 | 560 | 100 | Plus |
2L | 23513712 | 2L | 16854542..16854653 | 580..691 | 560 | 100 | Plus |
2L | 23513712 | 2L | 16853746..16853869 | 17..140 | 515 | 94.4 | Plus |
2L | 23513712 | 2L | 16844678..16844786 | 690..798 | 260 | 82.6 | Plus |
2L | 23513712 | 2L | 16844509..16844618 | 580..689 | 250 | 81.8 | Plus |
2L | 23513712 | 2L | 16843306..16843400 | 45..139 | 205 | 81.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:06:29 has no hits.
BS11274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:02 Download gff for
BS11274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 180..975 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:52 Download gff for
BS11274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 180..975 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:51:58 Download gff for
BS11274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 216..1019 | 6..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:55 Download gff for
BS11274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 216..1019 | 6..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:55 Download gff for
BS11274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16849137..16849261 | 6..133 | 96 | <- | Plus |
2L | 16849395..16849840 | 134..579 | 100 | <- | Plus |
2L | 16849984..16850094 | 580..690 | 100 | <- | Plus |
2L | 16850158..16850279 | 691..812 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:51:58 Download gff for
BS11274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849137..16849261 | 6..133 | 96 | <- | Plus |
arm_2L | 16849395..16849840 | 134..579 | 100 | <- | Plus |
arm_2L | 16849984..16850094 | 580..690 | 100 | <- | Plus |
arm_2L | 16850158..16850279 | 691..812 | 98 | | Plus |
BS11274.5prime Sequence
851 bp (728 high quality bases) assembled on 2006-04-18
> BS11274.5prime
GAAGTTATCAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAA
TCTACATAGTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTA
AAGTCCTTGTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCC
GAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGA
CCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGT
CAGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGC
AGTCACCAACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTG
TTGCGGACTTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAA
CTGAATGGAATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCA
CGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTC
TCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCC
CAGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTC
CGAACTCCAGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGT
TCGTTACCCATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAAT
ATCCATGTGCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTC
CTATTCCGATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATT
CCTATGGCCGGTCCGCAGTCTTTACACTGGGAAAGACGAACGAGACCAAC
G
BS11274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-PA | 975 | CG31810-RA | 1..835 | 17..851 | 4125 | 99.7 | Plus |
CG31809-PA | 702 | CG31809-RA | 139..562 | 428..851 | 2070 | 99.5 | Plus |
CG31809-PA | 702 | CG31809-RA | 17..139 | 195..317 | 615 | 100 | Plus |
CG13284-PA | 978 | CG13284-RA | 482..599 | 495..612 | 315 | 90.6 | Plus |
CG13284-PB | 1020 | CG13284-RB | 524..641 | 495..612 | 315 | 90.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 35..871 | 15..851 | 4155 | 99.8 | Plus |
CG31809-RC | 1186 | CG31809-RC | 119..920 | 50..851 | 3935 | 99.4 | Plus |
CG31809-RB | 1338 | CG31809-RB | 271..1072 | 50..851 | 3935 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849418..16849841 | 851..428 | 2090 | 99.5 | Minus |
2L | 23513712 | 2L | 16853976..16854399 | 851..428 | 2090 | 99.5 | Minus |
2L | 23513712 | 2L | 16852155..16852334 | 194..15 | 900 | 100 | Minus |
2L | 23513712 | 2L | 16843536..16843896 | 851..491 | 740 | 80.3 | Minus |
2L | 23513712 | 2L | 16858300..16858444 | 194..50 | 680 | 97.9 | Minus |
2L | 23513712 | 2L | 16850149..16850282 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16854707..16854840 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16849984..16850095 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16854542..16854653 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16844678..16844803 | 318..193 | 300 | 82.5 | Minus |
2L | 23513712 | 2L | 16844509..16844618 | 428..319 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:20 has no hits.
BS11274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:03 Download gff for
BS11274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:54 Download gff for
BS11274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:08:20 Download gff for
BS11274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 29..871 | 10..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:44 Download gff for
BS11274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 29..871 | 10..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:44 Download gff for
BS11274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16849418..16849840 | 429..851 | 99 | <- | Minus |
2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
2L | 16852155..16852340 | 10..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:08:20 Download gff for
BS11274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
arm_2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
arm_2L | 16849418..16849840 | 429..851 | 99 | <- | Minus |
arm_2L | 16852155..16852340 | 10..194 | 98 | | Minus |
BS11274.complete Sequence
1007 bp assembled on 2006-11-01
GenBank Submission: FJ636804
> BS11274.complete
GAAGTTATCAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAA
TCTACATAGTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTA
AAGTCCTTGTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCC
GAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGA
CCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGT
CAGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGC
AGTCACCAACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTG
TTGCGGACTTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAA
CTGAATGGAATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCA
CGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTC
TCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCC
CAGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTC
CGAACTCCAGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGT
TCGTTACCCATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAAT
ATCCATGTGCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTC
CTATTCCGATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATT
CCTATGCCCGGTCCGCAGTCTTTACACTGGGAAAGACGAGCGAGACCAAC
GGTTTCTGGGTTCATGGATTACAGTACGCCTTCATGAAGTTGGCTCCCAT
GGATATTCGTACTTACTTCGGATACCAACTCTTTAAACGAATGAGAATCG
AGGCCATGGAGCACAGACTGAAAAACCAAAAACTTTCTTAGAAGCTTTCT
AGACCAT
BS11274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 975 | CG31810-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
CG31809-RC | 951 | CG31809-PC | 10..951 | 50..991 | 4560 | 98.9 | Plus |
CG31809-RB | 951 | CG31809-PB | 10..951 | 50..991 | 4560 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 35..1011 | 15..991 | 4885 | 100 | Plus |
CG31809-RC | 1186 | CG31809-RC | 119..1060 | 50..991 | 4560 | 98.9 | Plus |
CG31809-RB | 1338 | CG31809-RB | 271..1212 | 50..991 | 4560 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849395..16849841 | 874..428 | 2235 | 100 | Minus |
2L | 23513712 | 2L | 16853953..16854399 | 874..428 | 2235 | 100 | Minus |
2L | 23513712 | 2L | 16852155..16852334 | 194..15 | 900 | 100 | Minus |
2L | 23513712 | 2L | 16843528..16843896 | 859..491 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16858300..16858444 | 194..50 | 680 | 97.9 | Minus |
2L | 23513712 | 2L | 16850149..16850282 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16854707..16854840 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16849145..16849268 | 991..868 | 620 | 100 | Minus |
2L | 23513712 | 2L | 16849984..16850095 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16854542..16854653 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16853746..16853869 | 991..868 | 515 | 94.4 | Minus |
2L | 23513712 | 2L | 16844678..16844803 | 318..193 | 300 | 82.5 | Minus |
2L | 23513712 | 2L | 16844509..16844618 | 428..319 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16843306..16843400 | 963..869 | 205 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:14:03 has no hits.
BS11274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:53 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:29 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 27..1017 | 10..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:29 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 37..1011 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:53 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 27..1017 | 10..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:18 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 37..1011 | 17..991 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:18 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16849145..16849261 | 875..991 | 100 | <- | Minus |
2L | 16849395..16849840 | 429..874 | 100 | <- | Minus |
2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
2L | 16852155..16852332 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:29 Download gff for
BS11274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849145..16849261 | 875..991 | 100 | <- | Minus |
arm_2L | 16849395..16849840 | 429..874 | 100 | <- | Minus |
arm_2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
arm_2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
arm_2L | 16852155..16852332 | 17..194 | 100 | | Minus |
BS11274.pep Sequence
Translation from 16 to 990
> BS11274.pep
MALILQVISTGIYIVGSLSIVAYLYENLKSLFSIIKSVVEPFFRPNLPKT
LAEKFGNWAVVTGATDGIGKEYARELARQGLNLVLVSRKEEKLIAVTNEI
GSQYNVKIKWIVADFAKGREVYAHIEKELNGIEVGILVNNVGTIHDPESL
DKVSEDMLWDLLTVNVGSVTMLTRKILPQMISRRKGAIVNLGSSSELQPH
PNLTAYAATKKFVTHFTKGLEYEVAEHNIHVQLVMPAFVATNMNSYSDKV
RQGGLLFPNAYSYARSAVFTLGKTSETNGFWVHGLQYAFMKLAPMDIRTY
FGYQLFKRMRIEAMEHRLKNQKLS*
BS11274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-PA | 324 | CG31810-PA | 1..324 | 1..324 | 1648 | 100 | Plus |
CG31809-PC | 316 | CG31809-PC | 4..316 | 12..324 | 1566 | 98.1 | Plus |
CG31809-PB | 316 | CG31809-PB | 4..316 | 12..324 | 1566 | 98.1 | Plus |
CG13284-PE | 325 | CG13284-PE | 1..325 | 1..324 | 1281 | 76.3 | Plus |
CG13284-PA | 325 | CG13284-PA | 1..325 | 1..324 | 1281 | 76.3 | Plus |