Clone Sequence Records
BS11277.3prime Sequence
732 bp (731 high quality bases) assembled on 2006-04-18
> BS11277.3prime
ATGGTCTAGAAAGCTTCTACAGCGAGTTGATGATCTTCCGGCTTCGCATC
TGCTCCATCCAGCTCTCGTACTGCTGCTCCGGCGTCTGCGGCTCCTGGTA
GTAGTGCTGCGGCGGCTCGCCCTCCTCCAGGCGCACGAAGTAGTGGCAGT
GCTTGTACTCCACTTTGCCGAAGCGACCGCGAGCATGCCGCCTCACGCCC
TTGAAGACGCGTCCCTTGCCCACGAAGGATTCGGCTATCCACAGATTGCT
CTTGTACTCCACGTTATGCCGCTCCACGGCTATTTGCTGGGCCTCCAGTA
TGGTCTCCTTCACATCGGTGGCCCCCTTTTTGAGCACAAAGTTCAGCTGC
TTCAGCGCCTCGTCGACGGACATTCCGCGAACAAAGGCAGCGATGTACCA
CATCTTGTCCGGACTGTATTTGATGTTGCTGCGCATGTGGCAGACATAAG
CATTTCTGGGCTCCTCGTCCGTTTCCTGCGGCGGATGCACGGTCTTGTTG
TACTCCAGCCATTTGCGGGGTCCGTAGTTGTACTTGTTCCACTTGGCGCA
CAGCATTCCGGCGGAAGCGGCCGTGTGCAGGGATTTCGACTGGAGGGCAG
GTGGTGAAACTGGTGATATGGCTGGTGATATTGAGCTGCTATCCGCCGAT
CGGAGGAGCGCTGCTCCCTGTGGCGCCTGCAGGCGCAGCTGGGACATTTG
CCGGATCACCTTGTGCATGTCGACTGATAACT
BS11277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4742-PA | 702 | mRpL22-RA | 1..702 | 718..17 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 973 | CG4742-RA | 143..844 | 718..17 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16784075..16784344 | 718..449 | 1350 | 100 | Minus |
X | 23542271 | X | 16784744..16784963 | 236..17 | 1100 | 100 | Minus |
X | 23542271 | X | 16784418..16784631 | 448..235 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 18:01:25 has no hits.
BS11277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:07 Download gff for
BS11277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:59 Download gff for
BS11277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:42 Download gff for
BS11277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..850 | 12..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:06:15 Download gff for
BS11277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..850 | 12..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:06:15 Download gff for
BS11277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16784075..16784344 | 449..718 | 100 | -> | Minus |
X | 16784418..16784631 | 235..448 | 100 | -> | Minus |
X | 16784746..16784969 | 12..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:42 Download gff for
BS11277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16678108..16678377 | 449..718 | 100 | -> | Minus |
arm_X | 16678451..16678664 | 235..448 | 100 | -> | Minus |
arm_X | 16678779..16679002 | 12..234 | 98 | | Minus |
BS11277.5prime Sequence
732 bp (731 high quality bases) assembled on 2006-04-18
> BS11277.5prime
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGTAGAAGCTTTCTAGACC
BS11277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4742-PA | 702 | mRpL22-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 973 | CG4742-RA | 143..844 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16784075..16784344 | 17..286 | 1350 | 100 | Plus |
X | 23542271 | X | 16784744..16784963 | 499..718 | 1100 | 100 | Plus |
X | 23542271 | X | 16784418..16784631 | 287..500 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:53:39 has no hits.
BS11277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:08 Download gff for
BS11277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:01 Download gff for
BS11277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:38 Download gff for
BS11277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..850 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:00 Download gff for
BS11277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..850 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:00 Download gff for
BS11277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16784075..16784344 | 17..286 | 100 | -> | Plus |
X | 16784418..16784631 | 287..500 | 100 | -> | Plus |
X | 16784746..16784969 | 501..723 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:38 Download gff for
BS11277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16678108..16678377 | 17..286 | 100 | -> | Plus |
arm_X | 16678451..16678664 | 287..500 | 100 | -> | Plus |
arm_X | 16678779..16679002 | 501..723 | 98 | | Plus |
BS11277.complete Sequence
734 bp assembled on 2006-11-01
GenBank Submission: FJ636805
> BS11277.complete
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGTAGAAGCTTTCTAGACCAT
BS11277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 702 | CG4742-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 973 | CG4742-RA | 143..844 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16784075..16784344 | 17..286 | 1350 | 100 | Plus |
X | 23542271 | X | 16784744..16784963 | 499..718 | 1100 | 100 | Plus |
X | 23542271 | X | 16784418..16784631 | 287..500 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:49 has no hits.
BS11277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:54 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:09 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 122..829 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:50 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..844 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:54 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 122..829 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:18 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..844 | 17..718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:18 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16784418..16784631 | 287..500 | 100 | -> | Plus |
X | 16784746..16784963 | 501..718 | 100 | | Plus |
X | 16784075..16784344 | 17..286 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:50 Download gff for
BS11277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16678108..16678377 | 17..286 | 100 | -> | Plus |
arm_X | 16678451..16678664 | 287..500 | 100 | -> | Plus |
arm_X | 16678779..16678996 | 501..718 | 100 | | Plus |
BS11277.pep Sequence
Translation from 16 to 717
> BS11277.pep
MHKVIRQMSQLRLQAPQGAALLRSADSSSISPAISPVSPPALQSKSLHTA
ASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIK
YSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVER
HNVEYKSNLWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEG
EPPQHYYQEPQTPEQQYESWMEQMRSRKIINSL*
BS11277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-PA | 233 | CG4742-PA | 1..233 | 1..233 | 1239 | 100 | Plus |