Clone BS11277 Report

Search the DGRC for BS11277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL22-RA
Protein status:BS11277.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11277.3prime Sequence

732 bp (731 high quality bases) assembled on 2006-04-18

> BS11277.3prime
ATGGTCTAGAAAGCTTCTACAGCGAGTTGATGATCTTCCGGCTTCGCATC
TGCTCCATCCAGCTCTCGTACTGCTGCTCCGGCGTCTGCGGCTCCTGGTA
GTAGTGCTGCGGCGGCTCGCCCTCCTCCAGGCGCACGAAGTAGTGGCAGT
GCTTGTACTCCACTTTGCCGAAGCGACCGCGAGCATGCCGCCTCACGCCC
TTGAAGACGCGTCCCTTGCCCACGAAGGATTCGGCTATCCACAGATTGCT
CTTGTACTCCACGTTATGCCGCTCCACGGCTATTTGCTGGGCCTCCAGTA
TGGTCTCCTTCACATCGGTGGCCCCCTTTTTGAGCACAAAGTTCAGCTGC
TTCAGCGCCTCGTCGACGGACATTCCGCGAACAAAGGCAGCGATGTACCA
CATCTTGTCCGGACTGTATTTGATGTTGCTGCGCATGTGGCAGACATAAG
CATTTCTGGGCTCCTCGTCCGTTTCCTGCGGCGGATGCACGGTCTTGTTG
TACTCCAGCCATTTGCGGGGTCCGTAGTTGTACTTGTTCCACTTGGCGCA
CAGCATTCCGGCGGAAGCGGCCGTGTGCAGGGATTTCGACTGGAGGGCAG
GTGGTGAAACTGGTGATATGGCTGGTGATATTGAGCTGCTATCCGCCGAT
CGGAGGAGCGCTGCTCCCTGTGGCGCCTGCAGGCGCAGCTGGGACATTTG
CCGGATCACCTTGTGCATGTCGACTGATAACT

BS11277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4742-PA 702 mRpL22-RA 1..702 718..17 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 973 CG4742-RA 143..844 718..17 3510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16784075..16784344 718..449 1350 100 Minus
X 23542271 X 16784744..16784963 236..17 1100 100 Minus
X 23542271 X 16784418..16784631 448..235 1070 100 Minus
Blast to na_te.dros performed on 2015-02-03 18:01:25 has no hits.

BS11277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:07 Download gff for BS11277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:32:59 Download gff for BS11277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:42 Download gff for BS11277.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..850 12..718 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:06:15 Download gff for BS11277.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..850 12..718 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:06:15 Download gff for BS11277.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16784075..16784344 449..718 100 -> Minus
X 16784418..16784631 235..448 100 -> Minus
X 16784746..16784969 12..234 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:42 Download gff for BS11277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16678108..16678377 449..718 100 -> Minus
arm_X 16678451..16678664 235..448 100 -> Minus
arm_X 16678779..16679002 12..234 98   Minus

BS11277.5prime Sequence

732 bp (731 high quality bases) assembled on 2006-04-18

> BS11277.5prime
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGTAGAAGCTTTCTAGACC

BS11277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4742-PA 702 mRpL22-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 973 CG4742-RA 143..844 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16784075..16784344 17..286 1350 100 Plus
X 23542271 X 16784744..16784963 499..718 1100 100 Plus
X 23542271 X 16784418..16784631 287..500 1070 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:53:39 has no hits.

BS11277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:08 Download gff for BS11277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:01 Download gff for BS11277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:38 Download gff for BS11277.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..850 17..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:00 Download gff for BS11277.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..850 17..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:00 Download gff for BS11277.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16784075..16784344 17..286 100 -> Plus
X 16784418..16784631 287..500 100 -> Plus
X 16784746..16784969 501..723 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:38 Download gff for BS11277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16678108..16678377 17..286 100 -> Plus
arm_X 16678451..16678664 287..500 100 -> Plus
arm_X 16678779..16679002 501..723 98   Plus

BS11277.complete Sequence

734 bp assembled on 2006-11-01

GenBank Submission: FJ636805

> BS11277.complete
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGTAGAAGCTTTCTAGACCAT

BS11277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 702 CG4742-PA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 973 CG4742-RA 143..844 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16784075..16784344 17..286 1350 100 Plus
X 23542271 X 16784744..16784963 499..718 1100 100 Plus
X 23542271 X 16784418..16784631 287..500 1070 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:07:49 has no hits.

BS11277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:54 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:09 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 122..829 17..723 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:50 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..844 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:54 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 122..829 17..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:18 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..844 17..718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:18 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
X 16784418..16784631 287..500 100 -> Plus
X 16784746..16784963 501..718 100   Plus
X 16784075..16784344 17..286 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:50 Download gff for BS11277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16678108..16678377 17..286 100 -> Plus
arm_X 16678451..16678664 287..500 100 -> Plus
arm_X 16678779..16678996 501..718 100   Plus

BS11277.pep Sequence

Translation from 16 to 717

> BS11277.pep
MHKVIRQMSQLRLQAPQGAALLRSADSSSISPAISPVSPPALQSKSLHTA
ASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIK
YSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVER
HNVEYKSNLWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEG
EPPQHYYQEPQTPEQQYESWMEQMRSRKIINSL*

BS11277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-PA 233 CG4742-PA 1..233 1..233 1239 100 Plus