Clone Sequence Records
BS11278.3prime Sequence
417 bp (416 high quality bases) assembled on 2006-04-18
> BS11278.3prime
ATGGTCTAGAAAGCTTTCACTCGGGGGCTTCCTCTGCTGTTGCGGTGGCA
CTGGCGTTGGCATTTTCGGCAGTGTTGGAATCCTTCTTGCTGGCCTTGCT
CTCCTTTTTCTCCTTGACCACTTTACGATAGACCTCGAGATCCTGCGTCA
GAGAGGGCACGAAGCTTTCGAAGTCTAGCTCGGTGAGGGTCTGTAGAATA
TCCTTGGCCGTGATGGTCTTGTGGTTCTGCTTGTGGGCCAACGCCGTCGA
CGAGGATGTCACGAAGATGGCAAACACAGATGCCGCTCGGGCGATCGCTG
CTCGCGCTTCCTTGCTGACACTAGCTGACTCCGGCAGTGCTTCCTTGATG
AGCCGGCCAATCACGGCATTCGGCAGGTTAAGATCCTCGATGCGCTCGAC
CATGTCGACTGATAACT
BS11278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13399-PA | 387 | Chrac-14-RA | 1..387 | 403..17 | 1935 | 100 | Minus |
CG13399-PB | 387 | Chrac-14-RB | 1..387 | 403..17 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 592 | CG13399-RB | 101..487 | 403..17 | 1935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8437505..8437891 | 403..17 | 1935 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 4048..4091 | 111..68 | 103 | 70.5 | Minus |
BS11278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:09 Download gff for
BS11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 17..403 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:02 Download gff for
BS11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 17..403 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:17:24 Download gff for
BS11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus201-RB | 94..487 | 17..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:01 Download gff for
BS11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 94..487 | 17..411 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:01 Download gff for
BS11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8437498..8437891 | 17..411 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:17:24 Download gff for
BS11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8437498..8437891 | 17..411 | 99 | | Minus |
BS11278.5prime Sequence
417 bp (416 high quality bases) assembled on 2006-04-18
> BS11278.5prime
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
TGAAAGCTTTCTAGACC
BS11278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13399-PA | 387 | Chrac-14-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG13399-PB | 387 | Chrac-14-RB | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 592 | CG13399-RB | 101..487 | 17..403 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8437505..8437891 | 17..403 | 1935 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 4048..4091 | 309..352 | 103 | 70.5 | Plus |
BS11278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:10 Download gff for
BS11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:04 Download gff for
BS11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:49 Download gff for
BS11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus201-RB | 94..487 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:17 Download gff for
BS11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 94..487 | 9..403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:17 Download gff for
BS11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8437498..8437891 | 9..403 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:49 Download gff for
BS11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8437498..8437891 | 9..403 | 99 | | Plus |
BS11278.complete Sequence
419 bp assembled on 2006-11-01
GenBank Submission: FJ636806
> BS11278.complete
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
TGAAAGCTTTCTAGACCAT
BS11278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 387 | CG13399-PB | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 592 | CG13399-RB | 101..487 | 17..403 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8437505..8437891 | 17..403 | 1935 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 4048..4091 | 309..352 | 103 | 70.5 | Plus |
BS11278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:55 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:10 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RA | 88..481 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:42 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus201-RB | 101..486 | 17..402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:55 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RA | 88..481 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:09 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 101..486 | 17..402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:09 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8437505..8437890 | 17..402 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:42 Download gff for
BS11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8437505..8437890 | 17..402 | 100 | | Plus |
BS11278.pep Sequence
Translation from 16 to 402
> BS11278.pep
MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTS
SSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKK
ESKASKKDSNTAENANASATATAEEAPE*
BS11278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-PB | 128 | CG13399-PB | 1..128 | 1..128 | 612 | 100 | Plus |