Clone BS11278 Report

Search the DGRC for BS11278

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptChrac-14-RB
Protein status:BS11278.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11278.3prime Sequence

417 bp (416 high quality bases) assembled on 2006-04-18

> BS11278.3prime
ATGGTCTAGAAAGCTTTCACTCGGGGGCTTCCTCTGCTGTTGCGGTGGCA
CTGGCGTTGGCATTTTCGGCAGTGTTGGAATCCTTCTTGCTGGCCTTGCT
CTCCTTTTTCTCCTTGACCACTTTACGATAGACCTCGAGATCCTGCGTCA
GAGAGGGCACGAAGCTTTCGAAGTCTAGCTCGGTGAGGGTCTGTAGAATA
TCCTTGGCCGTGATGGTCTTGTGGTTCTGCTTGTGGGCCAACGCCGTCGA
CGAGGATGTCACGAAGATGGCAAACACAGATGCCGCTCGGGCGATCGCTG
CTCGCGCTTCCTTGCTGACACTAGCTGACTCCGGCAGTGCTTCCTTGATG
AGCCGGCCAATCACGGCATTCGGCAGGTTAAGATCCTCGATGCGCTCGAC
CATGTCGACTGATAACT

BS11278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13399-PA 387 Chrac-14-RA 1..387 403..17 1935 100 Minus
CG13399-PB 387 Chrac-14-RB 1..387 403..17 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 592 CG13399-RB 101..487 403..17 1935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8437505..8437891 403..17 1935 100 Minus
Blast to na_te.dros performed 2015-02-11 11:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4048..4091 111..68 103 70.5 Minus

BS11278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:09 Download gff for BS11278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 17..403 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:02 Download gff for BS11278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 17..403 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:17:24 Download gff for BS11278.3prime
Subject Subject Range Query Range Percent Splice Strand
mus201-RB 94..487 17..411 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:01 Download gff for BS11278.3prime
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 94..487 17..411 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:01 Download gff for BS11278.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8437498..8437891 17..411 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:17:24 Download gff for BS11278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8437498..8437891 17..411 99   Minus

BS11278.5prime Sequence

417 bp (416 high quality bases) assembled on 2006-04-18

> BS11278.5prime
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
TGAAAGCTTTCTAGACC

BS11278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13399-PA 387 Chrac-14-RA 1..387 17..403 1935 100 Plus
CG13399-PB 387 Chrac-14-RB 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 592 CG13399-RB 101..487 17..403 1935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8437505..8437891 17..403 1935 100 Plus
Blast to na_te.dros performed 2015-02-11 16:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4048..4091 309..352 103 70.5 Plus

BS11278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:10 Download gff for BS11278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 17..403 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:04 Download gff for BS11278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:49 Download gff for BS11278.5prime
Subject Subject Range Query Range Percent Splice Strand
mus201-RB 94..487 9..403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:17 Download gff for BS11278.5prime
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 94..487 9..403 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:17 Download gff for BS11278.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8437498..8437891 9..403 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:49 Download gff for BS11278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8437498..8437891 9..403 99   Plus

BS11278.complete Sequence

419 bp assembled on 2006-11-01

GenBank Submission: FJ636806

> BS11278.complete
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
TGAAAGCTTTCTAGACCAT

BS11278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 387 CG13399-PB 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 592 CG13399-RB 101..487 17..403 1935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8437505..8437891 17..403 1935 100 Plus
Blast to na_te.dros performed 2014-11-27 06:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4048..4091 309..352 103 70.5 Plus

BS11278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:55 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:10 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RA 88..481 9..403 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:42 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
mus201-RB 101..486 17..402 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:55 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RA 88..481 9..403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:09 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 101..486 17..402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:09 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8437505..8437890 17..402 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:42 Download gff for BS11278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8437505..8437890 17..402 100   Plus

BS11278.pep Sequence

Translation from 16 to 402

> BS11278.pep
MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTS
SSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKK
ESKASKKDSNTAENANASATATAEEAPE*

BS11278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-PB 128 CG13399-PB 1..128 1..128 612 100 Plus