Clone BS11280 Report

Search the DGRC for BS11280

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG30411-RA
Protein status:BS11280.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11280.3prime Sequence

456 bp (455 high quality bases) assembled on 2006-04-18

> BS11280.3prime
ATGGTCTAGAAAGCTTCTACAGGTCCACTCCATAGATGGACACCTCGAGA
TGAGCCGCTCGCTCCGGCTGCCCCTCGGAGTCCCGAAGTCGCCGGCAGCG
GAGGACCACAAACTGCTGGCCAATGCCGCCAGACGTGAGCACCGCCTCCG
CTTCATCGGCGCCTAGATCTTCGACATGCACACCCGTAATCCGGTAGTTA
TCGCTGGCTTTCTGCAAGCCGTAGGCCACATCTCGGCCGGGGCTACCCGG
CGTCAGGTAAACATCTTCGGTGTGCAGCACGCTGGCGTATTTGTTGACAT
GACCCCAGGTGACCGAGGCGGCGTTGCCGAGCAGCACCTGCCCAGGTAGC
AAACAGAGCAGCACCACCAGCCACACCAGCCGCATCGGAAACATCCCGAA
CATCGCTGGCAACCATTCCCACTCCCACGCCCTTGTCAACATGTCGACTG
ATAACT

BS11280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 426 CG30411-RA 1..426 442..17 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 1237 CG30411-RA 124..555 448..17 2145 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416062..23416298 448..212 1170 99.6 Minus
2R 25286936 2R 23416358..23416556 215..17 995 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:51:55 has no hits.

BS11280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:13 Download gff for BS11280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:08 Download gff for BS11280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:38:10 Download gff for BS11280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..569 1..456 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:36 Download gff for BS11280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..569 1..456 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:36 Download gff for BS11280.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23416054..23416298 212..456 97 -> Minus
2R 23416362..23416570 1..211 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:38:10 Download gff for BS11280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303577..19303821 212..456 97 -> Minus
arm_2R 19303885..19304093 1..211 97   Minus

BS11280.5prime Sequence

456 bp (455 high quality bases) assembled on 2006-04-18

> BS11280.5prime
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGTAGAAGCTTTC
TAGACC

BS11280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 426 CG30411-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 1237 CG30411-RA 124..555 11..442 2145 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416062..23416298 11..247 1170 99.6 Plus
2R 25286936 2R 23416358..23416556 244..442 995 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:19:16 has no hits.

BS11280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:14 Download gff for BS11280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:09 Download gff for BS11280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:05 Download gff for BS11280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..566 3..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:34 Download gff for BS11280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..566 3..456 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:34 Download gff for BS11280.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23416054..23416298 3..247 97 -> Plus
2R 23416362..23416567 248..456 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:05 Download gff for BS11280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303885..19304090 248..456 98   Plus
arm_2R 19303577..19303821 3..247 97 -> Plus

BS11280.complete Sequence

458 bp assembled on 2006-11-01

GenBank Submission: FJ636807

> BS11280.complete
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGTAGAAGCTTTC
TAGACCAT

BS11280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 426 CG30411-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 1237 CG30411-RA 124..555 11..442 2145 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416062..23416298 11..247 1170 99.6 Plus
2R 25286936 2R 23416358..23416556 244..442 995 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:35:32 has no hits.

BS11280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:57 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:12 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 110..563 3..458 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:18 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 135..555 22..442 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:57 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 110..563 3..458 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:39 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 135..555 22..442 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:39 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23416073..23416298 22..247 100 -> Plus
2R 23416362..23416556 248..442 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:18 Download gff for BS11280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303596..19303821 22..247 100 -> Plus
arm_2R 19303885..19304079 248..442 100   Plus

BS11280.pep Sequence

Translation from 16 to 441

> BS11280.pep
MLTRAWEWEWLPAMFGMFPMRLVWLVVLLCLLPGQVLLGNAASVTWGHVN
KYASVLHTEDVYLTPGSPGRDVAYGLQKASDNYRITGVHVEDLGADEAEA
VLTSGGIGQQFVVLRCRRLRDSEGQPERAAHLEVSIYGVDL*

BS11280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 141 CG30411-PA 1..141 1..141 747 100 Plus