Clone Sequence Records
BS11280.3prime Sequence
456 bp (455 high quality bases) assembled on 2006-04-18
> BS11280.3prime
ATGGTCTAGAAAGCTTCTACAGGTCCACTCCATAGATGGACACCTCGAGA
TGAGCCGCTCGCTCCGGCTGCCCCTCGGAGTCCCGAAGTCGCCGGCAGCG
GAGGACCACAAACTGCTGGCCAATGCCGCCAGACGTGAGCACCGCCTCCG
CTTCATCGGCGCCTAGATCTTCGACATGCACACCCGTAATCCGGTAGTTA
TCGCTGGCTTTCTGCAAGCCGTAGGCCACATCTCGGCCGGGGCTACCCGG
CGTCAGGTAAACATCTTCGGTGTGCAGCACGCTGGCGTATTTGTTGACAT
GACCCCAGGTGACCGAGGCGGCGTTGCCGAGCAGCACCTGCCCAGGTAGC
AAACAGAGCAGCACCACCAGCCACACCAGCCGCATCGGAAACATCCCGAA
CATCGCTGGCAACCATTCCCACTCCCACGCCCTTGTCAACATGTCGACTG
ATAACT
BS11280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-PA | 426 | CG30411-RA | 1..426 | 442..17 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 1237 | CG30411-RA | 124..555 | 448..17 | 2145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23416062..23416298 | 448..212 | 1170 | 99.6 | Minus |
2R | 25286936 | 2R | 23416358..23416556 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:51:55 has no hits.
BS11280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:13 Download gff for
BS11280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:08 Download gff for
BS11280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:38:10 Download gff for
BS11280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..569 | 1..456 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:36 Download gff for
BS11280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..569 | 1..456 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:36 Download gff for
BS11280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23416054..23416298 | 212..456 | 97 | -> | Minus |
2R | 23416362..23416570 | 1..211 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:38:10 Download gff for
BS11280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19303577..19303821 | 212..456 | 97 | -> | Minus |
arm_2R | 19303885..19304093 | 1..211 | 97 | | Minus |
BS11280.5prime Sequence
456 bp (455 high quality bases) assembled on 2006-04-18
> BS11280.5prime
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGTAGAAGCTTTC
TAGACC
BS11280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-PA | 426 | CG30411-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 1237 | CG30411-RA | 124..555 | 11..442 | 2145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23416062..23416298 | 11..247 | 1170 | 99.6 | Plus |
2R | 25286936 | 2R | 23416358..23416556 | 244..442 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:19:16 has no hits.
BS11280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:14 Download gff for
BS11280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:09 Download gff for
BS11280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:05 Download gff for
BS11280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..566 | 3..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:34 Download gff for
BS11280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..566 | 3..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:34 Download gff for
BS11280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23416054..23416298 | 3..247 | 97 | -> | Plus |
2R | 23416362..23416567 | 248..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:05 Download gff for
BS11280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19303885..19304090 | 248..456 | 98 | | Plus |
arm_2R | 19303577..19303821 | 3..247 | 97 | -> | Plus |
BS11280.complete Sequence
458 bp assembled on 2006-11-01
GenBank Submission: FJ636807
> BS11280.complete
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGTAGAAGCTTTC
TAGACCAT
BS11280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 426 | CG30411-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 1237 | CG30411-RA | 124..555 | 11..442 | 2145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23416062..23416298 | 11..247 | 1170 | 99.6 | Plus |
2R | 25286936 | 2R | 23416358..23416556 | 244..442 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:35:32 has no hits.
BS11280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:57 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:12 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 110..563 | 3..458 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:18 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 135..555 | 22..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:57 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 110..563 | 3..458 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:39 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 135..555 | 22..442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:39 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23416073..23416298 | 22..247 | 100 | -> | Plus |
2R | 23416362..23416556 | 248..442 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:18 Download gff for
BS11280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19303596..19303821 | 22..247 | 100 | -> | Plus |
arm_2R | 19303885..19304079 | 248..442 | 100 | | Plus |
BS11280.pep Sequence
Translation from 16 to 441
> BS11280.pep
MLTRAWEWEWLPAMFGMFPMRLVWLVVLLCLLPGQVLLGNAASVTWGHVN
KYASVLHTEDVYLTPGSPGRDVAYGLQKASDNYRITGVHVEDLGADEAEA
VLTSGGIGQQFVVLRCRRLRDSEGQPERAAHLEVSIYGVDL*
BS11280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-PA | 141 | CG30411-PA | 1..141 | 1..141 | 747 | 100 | Plus |