Clone Sequence Records
BS11283.complete Sequence
564 bp assembled on 2009-05-14
GenBank Submission: KX802311
> BS11283.complete
GAAGTTATCAGTCGACATGCTGTCCCTAAGCGATCCCAACAATGCTGGTG
GCATTCCCGACAAGGCGTGGCAGCCGCACTTCGTGACCCTGGAAACGAGC
ATGGGAGAAATCACCGTGGAGCTGTACTGGAAACACGCGCCCAACACCTG
CCGCAACTTTGCCGAACTCTCGAGAAGGGGCTACTACAACAACGTGGTGT
TCCACCGGATCATCAGGGACTTCATGATCCAGGGCGGCGATCCCACGGGC
ACTGGCCGCGGAGGCGCCTCCATCTACGGATCGGAGTTCGCGGACGAGCT
GCACGGCGACTTGAGGCACACGGGCGCGGGCATCCTCTCGATGGCCAACT
CTGGACCGGACACCAACGGGTCCCAGTTCTTCATCACGCTGGCGCCCACG
CAGTGGCTGGATGGCAAGCACACGATCTTCGGCAGGGTCTACACGGGCAT
GGAGGTGGTCAAGCGGATCGGCATGGTGGAAACCGACAAGAACGATCGCC
CCGTGGATCCCCTAAGGATCATCAAGGCCAAGGTGGAGAAGCTGTGAAAG
CCTTTCTAGACCAT
BS11283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 531 | CG13892-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..610 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542230..542679 | 547..98 | 2250 | 100 | Minus |
| 3L | 28110227 | 3L | 542770..542852 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:56:28 has no hits.
BS11283.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:41:01 Download gff for
BS11283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 65..594 | 17..546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:27 Download gff for
BS11283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..609 | 17..546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:40 Download gff for
BS11283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..609 | 17..546 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:40 Download gff for
BS11283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542231..542677 | 100..546 | 100 | <- | Minus |
| 3L | 542770..542852 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:27 Download gff for
BS11283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542231..542677 | 100..546 | 100 | <- | Minus |
| arm_3L | 542770..542852 | 17..99 | 100 | | Minus |
BS11283.3prime Sequence
562 bp (561 high quality bases) assembled on 2006-04-18
> BS11283.3prime
ATGGTCTAGAAAGGCTTTCACAGCTTCTCCACCTTGGCCTTGATGATCCT
TAGGGGATCCACGGGGCGATCGTTCTTGTCGGTTTCCACCATGCCGATCC
GCTTGACCACCTCCATGCCCGTGTAGACCCTGCCGAAGATCGTGTGCTTG
CCATCCAGCCACTGCGTGGGCGCCAGCGTGATGAAGAACTGGGACCCGTT
GGTGTCCGGTCCAGAGTTGGCCATCGAGAGGATGCCCGCGCCCGTGTGCC
TCAAGTCGCCGTGCAGCTCGTCCGCGAACTCCGATCCGTAGATGGAGGCG
CCTCCGCGGCCAGTGCCCGTGGGATCGCCGCCCTGGATCATGAAGTCCCT
GATGATCCGGTGGAACACCACGTTGTTGTAGTAGCCCCTTCTCGAGAGTT
CGGCAAAGTTGCGGCAGGTGTTGGGCGCGTGTTTCCAGTACAGCTCCACG
GTGATTTCTCCCATGCTCGTTTCCAGGGTCACGAAGTGCGGCTGCCACGC
CTTGTCGGGAATGCCACCAGCATTGTTGGGATCGCTTAGGGACAGCATGT
CGACTGATAACT
BS11283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13892-PA | 531 | Cypl-RA | 1..531 | 548..18 | 2655 | 100 | Minus |
| CG2852-PA | 618 | CG2852-RA | 231..269 | 366..328 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..610 | 548..18 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542230..542679 | 18..467 | 2250 | 100 | Plus |
| 3L | 28110227 | 3L | 542770..542852 | 466..548 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 18:01:39 has no hits.
BS11283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:21 Download gff for
BS11283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-PA | 1..531 | 18..548 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:17 Download gff for
BS11283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13892-PA | 1..531 | 18..548 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:45 Download gff for
BS11283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..613 | 13..548 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:06:18 Download gff for
BS11283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..613 | 13..548 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:06:18 Download gff for
BS11283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542227..542677 | 13..465 | 99 | <- | Plus |
| 3L | 542770..542852 | 466..548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:45 Download gff for
BS11283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542227..542677 | 13..465 | 99 | <- | Plus |
| arm_3L | 542770..542852 | 466..548 | 100 | | Plus |
BS11283.5prime Sequence
562 bp (561 high quality bases) assembled on 2006-04-18
> BS11283.5prime
GAAGTTATCAGTCGACATGCTGTCCCTAAGCGATCCCAACAATGCTGGTG
GCATTCCCGACAAGGCGTGGCAGCCGCACTTCGTGACCCTGGAAACGAGC
ATGGGAGAAATCACCGTGGAGCTGTACTGGAAACACGCGCCCAACACCTG
CCGCAACTTTGCCGAACTCTCGAGAAGGGGCTACTACAACAACGTGGTGT
TCCACCGGATCATCAGGGACTTCATGATCCAGGGCGGCGATCCCACGGGC
ACTGGCCGCGGAGGCGCCTCCATCTACGGATCGGAGTTCGCGGACGAGCT
GCACGGCGACTTGAGGCACACGGGCGCGGGCATCCTCTCGATGGCCAACT
CTGGACCGGACACCAACGGGTCCCAGTTCTTCATCACGCTGGCGCCCACG
CAGTGGCTGGATGGCAAGCACACGATCTTCGGCAGGGTCTACACGGGCAT
GGAGGTGGTCAAGCGGATCGGCATGGTGGAAACCGACAAGAACGATCGCC
CCGTGGATCCCCTAAGGATCATCAAGGCCAAGGTGGAGAAGCTGTGAAAG
CCTTTCTAGACC
BS11283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13892-PA | 531 | Cypl-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG2852-PA | 618 | CG2852-RA | 231..269 | 199..237 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..610 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542230..542679 | 547..98 | 2250 | 100 | Minus |
| 3L | 28110227 | 3L | 542770..542852 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:30:59 has no hits.
BS11283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:22 Download gff for
BS11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:18 Download gff for
BS11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13892-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:23 Download gff for
BS11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..613 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:19 Download gff for
BS11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..613 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:19 Download gff for
BS11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542227..542677 | 100..552 | 99 | <- | Minus |
| 3L | 542770..542852 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:23 Download gff for
BS11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542227..542677 | 100..552 | 99 | <- | Minus |
| arm_3L | 542770..542852 | 17..99 | 100 | | Minus |
BS11283.pep Sequence
Translation from 16 to 546
> BS11283.pep
MLSLSDPNNAGGIPDKAWQPHFVTLETSMGEITVELYWKHAPNTCRNFAE
LSRRGYYNNVVFHRIIRDFMIQGGDPTGTGRGGASIYGSEFADELHGDLR
HTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHTIFGRVYTGMEVVKR
IGMVETDKNDRPVDPLRIIKAKVEKL*
BS11283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-PA | 176 | CG13892-PA | 1..176 | 1..176 | 943 | 100 | Plus |
| CG7747-PA | 517 | CG7747-PA | 281..432 | 22..173 | 435 | 50.7 | Plus |
| CG3511-PB | 637 | CG3511-PB | 484..631 | 23..169 | 425 | 54.1 | Plus |
| CG3511-PA | 637 | CG3511-PA | 484..631 | 23..169 | 425 | 54.1 | Plus |
| CG10907-PA | 502 | CG10907-PA | 15..166 | 23..173 | 379 | 46.4 | Plus |
