Clone BS11286 Report

Search the DGRC for BS11286

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptElf-RA
Protein status:BS11286.pep: full length peptide match
Sequenced Size:1892

Clone Sequence Records

BS11286.complete Sequence

1892 bp assembled on 2009-12-07

GenBank Submission: KX802569

> BS11286.complete
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGCCATGTTGATGCTGGCAAATCAACAATTG
GCGGACAGATCATGTCGCTCACGGGCATGGTGGACAAGCGAACACTGGAG
AAGTACGAGCGGGAGGCACGTGAGAAGTCGCGTGAGAGTTGGTACTTGTC
CTGGGCGCTGGACACCAACCAGGAGGAACGCGACAAGGGCAAGACCGTCG
AGGTGGGACGAGCCTTCTTCGAAACGGACCGAAAGCATTTCACTATCCTC
GACGCACCCGGTCACAAGAGCTTCGTGCCTAACATGATCGGTGGCGCGGC
GCAGGCCGATCTCGCAGTGCTGGTCATCTCGGCGCGAAAGGGTGAATTCG
AGACGGGCTTCGATCGCGGCGGCCAGACCCGAGAACATGCCATGTTGGCC
AAGACCGCCGGCGTTAAGCATCTGGTCGTGCTGGTCAACAAAATGGATGA
CCCAACGGTCAATTGGGATCAGACGCGCTACAACGAATGCAAAGACAAGA
TACTACCATACCTCAAGAAGCTGGGCTTCAACCCGGCCAAGGACCTTACC
TTTATGCCTTGCTCGGGCCTCAGCGGATACGGGCTGAAAGACCAAATCCC
GGAGACGCTCTGCCCCTGGTACCGGGGACCCGCCTTCATTCCGTTCATTG
ACGAGCTGCCCTCGCTCAACCGCAAGTCGGACGGGCCTTTCATCATGCCA
ATTGTGGACAAGTACAAGGATATGGGCACCGTGGTGATGGGCAAGGTTGA
GTCCGGAACAGCGCGCAAGGGTCAAAACCTGTTAGTGATGCCAAATAGGA
CGCAAGTGGCGGTGGATCAGTTGTTCTCGGACGACTTTGAAGTCACTTCT
GTTGGTCCCGGCGAGAACGTCAAGATTAAGCTGAAAGGTATTGAGGAGGA
GGATGTCTCGCCCGGTTTTGTTCTCTGCGATGCAGCCAATCCCATCAAGA
CGGGAAAAATCTTTGATGCTCAGGTCGTAATTTTAGAACACAAATCAATT
ATCTGTGCGGGTTACTCGGCTGTCATGCACATACACTGTGCAGCCGAAGA
AGTCACAGTTAAGGCCCTCATCTGTTTGGTCGACAAAAAGTCTGGTGACA
AATCAAAAACACGTCCACGGTTCGTTAAGCAGGATCAGGTTGCAATTATG
CGAATCGAGTGCTCCGGAATGATTTGCCTTGAACAATTTAAGCTATTCCC
TCAAATGGGCCGTTTTACGCTCAGAGATGAAAACAAAACCATTGCCATTG
GCAAGGTGCTGAAGGTGGTCGAATAAAAGCTTTCTAGACCAT

BS11286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RB 1860 CG6382-PB 1..1860 17..1876 9300 100 Plus
Elf-RD 1860 CG6382-PD 1..1860 17..1876 9300 100 Plus
Elf-RA 1860 CG6382-PA 1..1860 17..1876 9300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RB 4120 CG6382-RB 546..2406 17..1877 9305 100 Plus
Elf-RD 3003 CG6382-RD 106..1966 17..1877 9305 100 Plus
Elf-RA 3443 CG6382-RA 546..2406 17..1877 9305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12438071..12438841 629..1399 3855 100 Plus
2L 23513712 2L 12434997..12435423 17..443 2135 100 Plus
2L 23513712 2L 12437812..12437998 443..629 935 100 Plus
2L 23513712 2L 12439054..12439231 1487..1664 890 100 Plus
2L 23513712 2L 12439294..12439464 1662..1832 855 100 Plus
2L 23513712 2L 12438901..12438989 1399..1487 445 100 Plus
2L 23513712 2L 12439521..12439565 1833..1877 225 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:11:56 has no hits.

BS11286.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:49 Download gff for BS11286.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 566..2423 17..1874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:27 Download gff for BS11286.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..2403 17..1874 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:41 Download gff for BS11286.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 566..2423 17..1874 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:09 Download gff for BS11286.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..2403 17..1874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:09 Download gff for BS11286.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12434997..12435423 17..443 100 -> Plus
2L 12437813..12437998 444..629 100 -> Plus
2L 12438072..12438841 630..1399 100 -> Plus
2L 12438902..12438988 1400..1486 100 -> Plus
2L 12439054..12439230 1487..1663 100 -> Plus
2L 12439296..12439464 1664..1832 100 -> Plus
2L 12439521..12439562 1833..1874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:27 Download gff for BS11286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12434997..12435423 17..443 100 -> Plus
arm_2L 12437813..12437998 444..629 100 -> Plus
arm_2L 12438072..12438841 630..1399 100 -> Plus
arm_2L 12438902..12438988 1400..1486 100 -> Plus
arm_2L 12439054..12439230 1487..1663 100 -> Plus
arm_2L 12439296..12439464 1664..1832 100 -> Plus
arm_2L 12439521..12439562 1833..1874 100   Plus

BS11286.3prime Sequence

788 bp (785 high quality bases) assembled on 2006-04-18

> BS11286.3prime
ATGGTCTAGAAAGCTTTTATTCGACCACCTTCAGCACCTTGCCAATGGCA
ATGGTTTTGTTTTCATCTCTGAGCGTAAAACGGCCCATTTGAGGGAATAG
CTTAAATTGTTCAAGGCAAATCATTCCGGAGCACTCGATTCGCATAATTG
CAACCTGATCCTGCTTAACGAACCGTGGACGTGTTTTTGATTTGTCACCA
GACTTTTTGTCGACCAAACAGATGAGGGCCTTAACTGTGACTTCTTCGGC
TGCACAGTGTATGTGCATGACAGCCGAGTAACCCGCACAGATAATTGATT
TGTGTTCTAAAATTACGACCTGAGCATCAAAGATTTTTCCCGTCTTGATG
GGATTGGCTGCATCGCAGAGAACAAAACCGGGCGAGACATCCTCCTCCTC
AATACCTTTCAGCTTAATCTTGACGTTCTCGCCGGGACCAACAGAAGTGA
CTTCAAAGTCGTCCGAGAACAACTGATCCACCGCCACTTGCGTCCTATTT
GGCATCACTAACAGGTTTTGACCCTTGCGCGCTGTTCCGGACTCAACCTT
GCCCATCACCACGGTGCCCATATCCTTGTACTTGTCCACAATTGGCATGA
TGAAAGGCCCGTCCGACTTGCGGTTGAGCGAGGGCAGCTCGTCAATGAAC
GGAATGAAGGCGGGTCCCCGGTACCAGGGGCAGAGCGTCTCCGGGATTTG
GTCTTTCAGCCCGTATCCGCTGAGGCCCGAGCAAGGCATAAAGGTAAGGC
CCTTGGCCGGGTTGAAGCCCAGCTTCTTGAGGTATGGT

BS11286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6382-PA 1860 Elf-RA 1089..1860 788..17 3835 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RC 2760 CG6382-RC 951..1723 788..16 3850 99.9 Minus
Elf-RB 4120 CG6382-RB 1634..2406 788..16 3850 99.9 Minus
Elf-RD 3003 CG6382-RD 1194..1966 788..16 3850 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12438547..12438841 788..494 1460 99.7 Minus
2L 23513712 2L 12439054..12439231 406..229 890 100 Minus
2L 23513712 2L 12439294..12439464 231..61 855 100 Minus
2L 23513712 2L 12438901..12438989 494..406 445 100 Minus
2L 23513712 2L 12439521..12439565 60..16 225 100 Minus
Blast to na_te.dros performed 2015-02-12 11:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Helena 691 Dvir\Helena DV26847 691bp Derived from U26847 (Rel. 63, Last updated, Version 2). 63..106 778..735 112 72.7 Minus

BS11286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:25 Download gff for BS11286.3prime
Subject Subject Range Query Range Percent Splice Strand
Elf-PA 1089..1860 17..788 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:23 Download gff for BS11286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6382-PA 1089..1860 17..788 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:09 Download gff for BS11286.3prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 1634..2408 11..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:19 Download gff for BS11286.3prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RD 1194..1968 11..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:19 Download gff for BS11286.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12438547..12438841 494..788 99 -> Minus
2L 12438902..12438988 407..493 100 -> Minus
2L 12439054..12439230 230..406 100 -> Minus
2L 12439296..12439464 61..229 100 -> Minus
2L 12439521..12439567 11..60 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:09 Download gff for BS11286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12438547..12438841 494..788 99 -> Minus
arm_2L 12438902..12438988 407..493 100 -> Minus
arm_2L 12439054..12439230 230..406 100 -> Minus
arm_2L 12439296..12439464 61..229 100 -> Minus
arm_2L 12439521..12439567 11..60 94   Minus

BS11286.5prime Sequence

699 bp (619 high quality bases) assembled on 2006-04-18

> BS11286.5prime
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGGAAATCAACAATTG
GCGGACAGATCATGTCGCTCACGGGGATGGTGGACAAGCGAACACTGGA

BS11286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6382-PA 1860 Elf-RA 1..683 17..699 3340 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RB 4120 CG6382-RB 546..1228 17..699 3370 99.6 Plus
Elf-RD 3003 CG6382-RD 106..788 17..699 3370 99.6 Plus
Elf-RA 3443 CG6382-RA 546..1228 17..699 3370 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12434997..12435423 17..443 2135 100 Plus
2L 23513712 2L 12437812..12437998 443..629 920 99.5 Plus
2L 23513712 2L 12438071..12438141 629..699 325 97.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:02 has no hits.

BS11286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:26 Download gff for BS11286.5prime
Subject Subject Range Query Range Percent Splice Strand
Elf-PA 1..682 17..698 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:24 Download gff for BS11286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6382-PA 1..682 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:40:34 Download gff for BS11286.5prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..1227 17..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:51 Download gff for BS11286.5prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..1227 17..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:51 Download gff for BS11286.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12438072..12438140 630..698 97   Plus
2L 12434997..12435423 17..443 100 -> Plus
2L 12437813..12437998 444..629 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:40:34 Download gff for BS11286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12434997..12435423 17..443 100 -> Plus
arm_2L 12437813..12437998 444..629 99 -> Plus
arm_2L 12438072..12438140 630..698 97   Plus

BS11286.pep Sequence

Translation from 16 to 1875

> BS11286.pep
MAAQENTEISTKFSTLNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAE
ETADPGPASGSATPATTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPP
TSSSNSASPAPGSPATTPSAGAAAADPTPIDGLNPSDKIANNETDPADSW
DVDDAVITPEDEEVEDAEFTEGEATPKVSKKKVVKVEENRSKREHVNVVF
IGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDT
NQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLA
VLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNW
DQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLSGYGLKDQIPETLCP
WYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMGKVESGTAR
KGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPG
FVLCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKA
LICLVDKKSGDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRF
TLRDENKTIAIGKVLKVVE*

BS11286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-PB 619 CG6382-PB 1..619 1..619 3197 100 Plus
Elf-PD 619 CG6382-PD 1..619 1..619 3197 100 Plus
Elf-PA 619 CG6382-PA 1..619 1..619 3197 100 Plus
Elf-PC 495 CG6382-PC 19..495 143..619 2483 99.8 Plus
HBS1-PB 670 CG1898-PB 149..669 85..617 806 34.6 Plus