Clone Sequence Records
BS11286.complete Sequence
1892 bp assembled on 2009-12-07
GenBank Submission: KX802569
> BS11286.complete
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGCCATGTTGATGCTGGCAAATCAACAATTG
GCGGACAGATCATGTCGCTCACGGGCATGGTGGACAAGCGAACACTGGAG
AAGTACGAGCGGGAGGCACGTGAGAAGTCGCGTGAGAGTTGGTACTTGTC
CTGGGCGCTGGACACCAACCAGGAGGAACGCGACAAGGGCAAGACCGTCG
AGGTGGGACGAGCCTTCTTCGAAACGGACCGAAAGCATTTCACTATCCTC
GACGCACCCGGTCACAAGAGCTTCGTGCCTAACATGATCGGTGGCGCGGC
GCAGGCCGATCTCGCAGTGCTGGTCATCTCGGCGCGAAAGGGTGAATTCG
AGACGGGCTTCGATCGCGGCGGCCAGACCCGAGAACATGCCATGTTGGCC
AAGACCGCCGGCGTTAAGCATCTGGTCGTGCTGGTCAACAAAATGGATGA
CCCAACGGTCAATTGGGATCAGACGCGCTACAACGAATGCAAAGACAAGA
TACTACCATACCTCAAGAAGCTGGGCTTCAACCCGGCCAAGGACCTTACC
TTTATGCCTTGCTCGGGCCTCAGCGGATACGGGCTGAAAGACCAAATCCC
GGAGACGCTCTGCCCCTGGTACCGGGGACCCGCCTTCATTCCGTTCATTG
ACGAGCTGCCCTCGCTCAACCGCAAGTCGGACGGGCCTTTCATCATGCCA
ATTGTGGACAAGTACAAGGATATGGGCACCGTGGTGATGGGCAAGGTTGA
GTCCGGAACAGCGCGCAAGGGTCAAAACCTGTTAGTGATGCCAAATAGGA
CGCAAGTGGCGGTGGATCAGTTGTTCTCGGACGACTTTGAAGTCACTTCT
GTTGGTCCCGGCGAGAACGTCAAGATTAAGCTGAAAGGTATTGAGGAGGA
GGATGTCTCGCCCGGTTTTGTTCTCTGCGATGCAGCCAATCCCATCAAGA
CGGGAAAAATCTTTGATGCTCAGGTCGTAATTTTAGAACACAAATCAATT
ATCTGTGCGGGTTACTCGGCTGTCATGCACATACACTGTGCAGCCGAAGA
AGTCACAGTTAAGGCCCTCATCTGTTTGGTCGACAAAAAGTCTGGTGACA
AATCAAAAACACGTCCACGGTTCGTTAAGCAGGATCAGGTTGCAATTATG
CGAATCGAGTGCTCCGGAATGATTTGCCTTGAACAATTTAAGCTATTCCC
TCAAATGGGCCGTTTTACGCTCAGAGATGAAAACAAAACCATTGCCATTG
GCAAGGTGCTGAAGGTGGTCGAATAAAAGCTTTCTAGACCAT
BS11286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RB | 1860 | CG6382-PB | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Elf-RD | 1860 | CG6382-PD | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Elf-RA | 1860 | CG6382-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RB | 4120 | CG6382-RB | 546..2406 | 17..1877 | 9305 | 100 | Plus |
Elf-RD | 3003 | CG6382-RD | 106..1966 | 17..1877 | 9305 | 100 | Plus |
Elf-RA | 3443 | CG6382-RA | 546..2406 | 17..1877 | 9305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12438071..12438841 | 629..1399 | 3855 | 100 | Plus |
2L | 23513712 | 2L | 12434997..12435423 | 17..443 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 12437812..12437998 | 443..629 | 935 | 100 | Plus |
2L | 23513712 | 2L | 12439054..12439231 | 1487..1664 | 890 | 100 | Plus |
2L | 23513712 | 2L | 12439294..12439464 | 1662..1832 | 855 | 100 | Plus |
2L | 23513712 | 2L | 12438901..12438989 | 1399..1487 | 445 | 100 | Plus |
2L | 23513712 | 2L | 12439521..12439565 | 1833..1877 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:11:56 has no hits.
BS11286.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:49 Download gff for
BS11286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 566..2423 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:27 Download gff for
BS11286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..2403 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:41 Download gff for
BS11286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 566..2423 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:09 Download gff for
BS11286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..2403 | 17..1874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:09 Download gff for
BS11286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
2L | 12437813..12437998 | 444..629 | 100 | -> | Plus |
2L | 12438072..12438841 | 630..1399 | 100 | -> | Plus |
2L | 12438902..12438988 | 1400..1486 | 100 | -> | Plus |
2L | 12439054..12439230 | 1487..1663 | 100 | -> | Plus |
2L | 12439296..12439464 | 1664..1832 | 100 | -> | Plus |
2L | 12439521..12439562 | 1833..1874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:27 Download gff for
BS11286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
arm_2L | 12437813..12437998 | 444..629 | 100 | -> | Plus |
arm_2L | 12438072..12438841 | 630..1399 | 100 | -> | Plus |
arm_2L | 12438902..12438988 | 1400..1486 | 100 | -> | Plus |
arm_2L | 12439054..12439230 | 1487..1663 | 100 | -> | Plus |
arm_2L | 12439296..12439464 | 1664..1832 | 100 | -> | Plus |
arm_2L | 12439521..12439562 | 1833..1874 | 100 | | Plus |
BS11286.3prime Sequence
788 bp (785 high quality bases) assembled on 2006-04-18
> BS11286.3prime
ATGGTCTAGAAAGCTTTTATTCGACCACCTTCAGCACCTTGCCAATGGCA
ATGGTTTTGTTTTCATCTCTGAGCGTAAAACGGCCCATTTGAGGGAATAG
CTTAAATTGTTCAAGGCAAATCATTCCGGAGCACTCGATTCGCATAATTG
CAACCTGATCCTGCTTAACGAACCGTGGACGTGTTTTTGATTTGTCACCA
GACTTTTTGTCGACCAAACAGATGAGGGCCTTAACTGTGACTTCTTCGGC
TGCACAGTGTATGTGCATGACAGCCGAGTAACCCGCACAGATAATTGATT
TGTGTTCTAAAATTACGACCTGAGCATCAAAGATTTTTCCCGTCTTGATG
GGATTGGCTGCATCGCAGAGAACAAAACCGGGCGAGACATCCTCCTCCTC
AATACCTTTCAGCTTAATCTTGACGTTCTCGCCGGGACCAACAGAAGTGA
CTTCAAAGTCGTCCGAGAACAACTGATCCACCGCCACTTGCGTCCTATTT
GGCATCACTAACAGGTTTTGACCCTTGCGCGCTGTTCCGGACTCAACCTT
GCCCATCACCACGGTGCCCATATCCTTGTACTTGTCCACAATTGGCATGA
TGAAAGGCCCGTCCGACTTGCGGTTGAGCGAGGGCAGCTCGTCAATGAAC
GGAATGAAGGCGGGTCCCCGGTACCAGGGGCAGAGCGTCTCCGGGATTTG
GTCTTTCAGCCCGTATCCGCTGAGGCCCGAGCAAGGCATAAAGGTAAGGC
CCTTGGCCGGGTTGAAGCCCAGCTTCTTGAGGTATGGT
BS11286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6382-PA | 1860 | Elf-RA | 1089..1860 | 788..17 | 3835 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RC | 2760 | CG6382-RC | 951..1723 | 788..16 | 3850 | 99.9 | Minus |
Elf-RB | 4120 | CG6382-RB | 1634..2406 | 788..16 | 3850 | 99.9 | Minus |
Elf-RD | 3003 | CG6382-RD | 1194..1966 | 788..16 | 3850 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12438547..12438841 | 788..494 | 1460 | 99.7 | Minus |
2L | 23513712 | 2L | 12439054..12439231 | 406..229 | 890 | 100 | Minus |
2L | 23513712 | 2L | 12439294..12439464 | 231..61 | 855 | 100 | Minus |
2L | 23513712 | 2L | 12438901..12438989 | 494..406 | 445 | 100 | Minus |
2L | 23513712 | 2L | 12439521..12439565 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Helena | 691 | Dvir\Helena DV26847 691bp Derived from U26847 (Rel. 63, Last updated, Version 2). | 63..106 | 778..735 | 112 | 72.7 | Minus |
BS11286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:25 Download gff for
BS11286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-PA | 1089..1860 | 17..788 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:23 Download gff for
BS11286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6382-PA | 1089..1860 | 17..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:09 Download gff for
BS11286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 1634..2408 | 11..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:19 Download gff for
BS11286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RD | 1194..1968 | 11..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:19 Download gff for
BS11286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12438547..12438841 | 494..788 | 99 | -> | Minus |
2L | 12438902..12438988 | 407..493 | 100 | -> | Minus |
2L | 12439054..12439230 | 230..406 | 100 | -> | Minus |
2L | 12439296..12439464 | 61..229 | 100 | -> | Minus |
2L | 12439521..12439567 | 11..60 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:09 Download gff for
BS11286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12438547..12438841 | 494..788 | 99 | -> | Minus |
arm_2L | 12438902..12438988 | 407..493 | 100 | -> | Minus |
arm_2L | 12439054..12439230 | 230..406 | 100 | -> | Minus |
arm_2L | 12439296..12439464 | 61..229 | 100 | -> | Minus |
arm_2L | 12439521..12439567 | 11..60 | 94 | | Minus |
BS11286.5prime Sequence
699 bp (619 high quality bases) assembled on 2006-04-18
> BS11286.5prime
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGGAAATCAACAATTG
GCGGACAGATCATGTCGCTCACGGGGATGGTGGACAAGCGAACACTGGA
BS11286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6382-PA | 1860 | Elf-RA | 1..683 | 17..699 | 3340 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RB | 4120 | CG6382-RB | 546..1228 | 17..699 | 3370 | 99.6 | Plus |
Elf-RD | 3003 | CG6382-RD | 106..788 | 17..699 | 3370 | 99.6 | Plus |
Elf-RA | 3443 | CG6382-RA | 546..1228 | 17..699 | 3370 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12434997..12435423 | 17..443 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 12437812..12437998 | 443..629 | 920 | 99.5 | Plus |
2L | 23513712 | 2L | 12438071..12438141 | 629..699 | 325 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:02 has no hits.
BS11286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:26 Download gff for
BS11286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-PA | 1..682 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:24 Download gff for
BS11286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6382-PA | 1..682 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:40:34 Download gff for
BS11286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..1227 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:51 Download gff for
BS11286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..1227 | 17..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:51 Download gff for
BS11286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12438072..12438140 | 630..698 | 97 | | Plus |
2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
2L | 12437813..12437998 | 444..629 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:40:34 Download gff for
BS11286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
arm_2L | 12437813..12437998 | 444..629 | 99 | -> | Plus |
arm_2L | 12438072..12438140 | 630..698 | 97 | | Plus |
BS11286.pep Sequence
Translation from 16 to 1875
> BS11286.pep
MAAQENTEISTKFSTLNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAE
ETADPGPASGSATPATTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPP
TSSSNSASPAPGSPATTPSAGAAAADPTPIDGLNPSDKIANNETDPADSW
DVDDAVITPEDEEVEDAEFTEGEATPKVSKKKVVKVEENRSKREHVNVVF
IGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDT
NQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLA
VLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNW
DQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLSGYGLKDQIPETLCP
WYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMGKVESGTAR
KGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPG
FVLCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKA
LICLVDKKSGDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRF
TLRDENKTIAIGKVLKVVE*
BS11286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-PB | 619 | CG6382-PB | 1..619 | 1..619 | 3197 | 100 | Plus |
Elf-PD | 619 | CG6382-PD | 1..619 | 1..619 | 3197 | 100 | Plus |
Elf-PA | 619 | CG6382-PA | 1..619 | 1..619 | 3197 | 100 | Plus |
Elf-PC | 495 | CG6382-PC | 19..495 | 143..619 | 2483 | 99.8 | Plus |
HBS1-PB | 670 | CG1898-PB | 149..669 | 85..617 | 806 | 34.6 | Plus |