Clone Sequence Records
BS11293.3prime Sequence
789 bp (788 high quality bases) assembled on 2006-04-18
> BS11293.3prime
ATGGTCTAGAAAGCTTTTAACTTAAGAATATATTATCGAAGGGCACTTTC
TCGAACAGTTTGTTGGACAGCTCCCTGAAGATGATGCCGAAACTCTTGGC
ATATCCCACCTTTAGTTCGTTGAACACCGTCTCCCAGTTTTCGTTAAGGA
ATCGATTCATACCATCCGACAGAGTTTTGTCGTTGAATAGATTCTCGAAG
TTCATGTACACCCTCTTGGGATCGAAGGACACCCGGTAGTCCTTTAGTCG
CATGTACTTGACGCCATCCTTCTCAAAGGGTTCGCCGATCAGGCGATGCT
CGATCTTGGTGTTGATCAGCGTGACATTGGCCTTTCCATGTCCCGTGATG
GGCAGCAGAAGGATGCGGCCGGACATCTCGTAGTCGCCAATCATCTCTAT
GCGATCCGTTCGGCTATCACAGATAATCAAGTGCTTATCCAGATCGGTTC
TGTACCGCTGGATCTTGCTGGTGGAGATCATGTCGTGCACCTTCACATTC
TTCAAGGCCTGGCGCAGATTTATTGGCGCATTGCCGGCGTCTATAACGAG
TTTCTTTACGGTCAGCGGTTCGAGGGGCGGGATGCCAAATTCCCTATTGC
CCGCCTTCAGCTGCTGTATCGCCACATTGACGGCATCCACCAGGCATTTG
TCGAAGTTCGCGTCCCGTTTGCACTTGGGAAAGCCTTCGGGCAATTCTTG
CGCAGCCGTTACAGTAAGTTCCTGCGCAACCGCAGCGATTAGCAGCAGCA
TTAGTAGTAGCGAGTATTTTGACATGTCGACTGATAACT
BS11293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-PA | 759 | CG13618-RA | 1..759 | 775..17 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 1021 | CG13618-RA | 180..938 | 775..17 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24527015..24527450 | 452..17 | 2180 | 100 | Minus |
3R | 32079331 | 3R | 24526750..24526901 | 601..450 | 760 | 100 | Minus |
3R | 32079331 | 3R | 24526599..24526689 | 690..600 | 455 | 100 | Minus |
3R | 32079331 | 3R | 24524973..24525057 | 775..691 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:42:38 has no hits.
BS11293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:42 Download gff for
BS11293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:43 Download gff for
BS11293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:15:56 Download gff for
BS11293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..944 | 11..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:36 Download gff for
BS11293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..944 | 11..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:36 Download gff for
BS11293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24526599..24526688 | 601..690 | 100 | -> | Minus |
3R | 24526751..24526901 | 450..600 | 100 | -> | Minus |
3R | 24524968..24525057 | 691..781 | 95 | -> | Minus |
3R | 24527018..24527456 | 11..449 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:15:56 Download gff for
BS11293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20350690..20350779 | 691..781 | 95 | -> | Minus |
arm_3R | 20352321..20352410 | 601..690 | 100 | -> | Minus |
arm_3R | 20352473..20352623 | 450..600 | 100 | -> | Minus |
arm_3R | 20352740..20353178 | 11..449 | 99 | | Minus |
BS11293.5prime Sequence
789 bp (788 high quality bases) assembled on 2006-04-18
> BS11293.5prime
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTTAAAAGCTTTCTAGACC
BS11293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-PA | 759 | CG13618-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 1021 | CG13618-RA | 180..938 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24527015..24527450 | 340..775 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 24526750..24526901 | 191..342 | 760 | 100 | Plus |
3R | 32079331 | 3R | 24526599..24526689 | 102..192 | 455 | 100 | Plus |
3R | 32079331 | 3R | 24524973..24525057 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:49:05 has no hits.
BS11293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:43 Download gff for
BS11293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:44 Download gff for
BS11293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:04 Download gff for
BS11293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..944 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:37 Download gff for
BS11293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..944 | 17..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:37 Download gff for
BS11293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24524968..24525057 | 11..101 | 95 | -> | Plus |
3R | 24526599..24526688 | 102..191 | 100 | -> | Plus |
3R | 24526751..24526901 | 192..342 | 100 | -> | Plus |
3R | 24527018..24527456 | 343..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:04 Download gff for
BS11293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20352321..20352410 | 102..191 | 100 | -> | Plus |
arm_3R | 20350690..20350779 | 11..101 | 95 | -> | Plus |
arm_3R | 20352473..20352623 | 192..342 | 100 | -> | Plus |
arm_3R | 20352740..20353178 | 343..781 | 99 | | Plus |
BS11293.complete Sequence
791 bp assembled on 2006-11-01
GenBank Submission: FJ636808
> BS11293.complete
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTTAAAAGCTTTCTAGACCAT
BS11293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 759 | CG13618-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 1021 | CG13618-RA | 180..938 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24527015..24527450 | 340..775 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 24526750..24526901 | 191..342 | 760 | 100 | Plus |
3R | 32079331 | 3R | 24526599..24526689 | 102..192 | 455 | 100 | Plus |
3R | 32079331 | 3R | 24524973..24525057 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:01:45 has no hits.
BS11293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:58 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:14 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 174..938 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:40 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..936 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:58 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 174..938 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:42 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..936 | 17..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:42 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24524973..24525057 | 17..101 | 100 | -> | Plus |
3R | 24526599..24526688 | 102..191 | 100 | -> | Plus |
3R | 24526751..24526901 | 192..342 | 100 | -> | Plus |
3R | 24527018..24527448 | 343..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:40 Download gff for
BS11293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20352473..20352623 | 192..342 | 100 | -> | Plus |
arm_3R | 20350695..20350779 | 17..101 | 100 | -> | Plus |
arm_3R | 20352321..20352410 | 102..191 | 100 | -> | Plus |
arm_3R | 20352740..20353170 | 343..773 | 100 | | Plus |
BS11293.pep Sequence
Translation from 16 to 774
> BS11293.pep
MSKYSLLLMLLLIAAVAQELTVTAAQELPEGFPKCKRDANFDKCLVDAVN
VAIQQLKAGNREFGIPPLEPLTVKKLVIDAGNAPINLRQALKNVKVHDMI
STSKIQRYRTDLDKHLIICDSRTDRIEMIGDYEMSGRILLLPITGHGKAN
VTLINTKIEHRLIGEPFEKDGVKYMRLKDYRVSFDPKRVYMNFENLFNDK
TLSDGMNRFLNENWETVFNELKVGYAKSFGIIFRELSNKLFEKVPFDNIF
LS*
BS11293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-PA | 252 | CG13618-PA | 1..252 | 1..252 | 1294 | 100 | Plus |
CG11854-PB | 250 | CG11854-PB | 3..249 | 6..251 | 327 | 32.4 | Plus |
CG10407-PB | 259 | CG10407-PB | 1..256 | 1..249 | 326 | 30.7 | Plus |
CG10407-PA | 259 | CG10407-PA | 1..256 | 1..249 | 326 | 30.7 | Plus |
to-PB | 249 | CG11853-PB | 1..245 | 9..250 | 281 | 29 | Plus |