Clone BS11293 Report

Search the DGRC for BS11293

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG13618-RA
Protein status:BS11293.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11293.3prime Sequence

789 bp (788 high quality bases) assembled on 2006-04-18

> BS11293.3prime
ATGGTCTAGAAAGCTTTTAACTTAAGAATATATTATCGAAGGGCACTTTC
TCGAACAGTTTGTTGGACAGCTCCCTGAAGATGATGCCGAAACTCTTGGC
ATATCCCACCTTTAGTTCGTTGAACACCGTCTCCCAGTTTTCGTTAAGGA
ATCGATTCATACCATCCGACAGAGTTTTGTCGTTGAATAGATTCTCGAAG
TTCATGTACACCCTCTTGGGATCGAAGGACACCCGGTAGTCCTTTAGTCG
CATGTACTTGACGCCATCCTTCTCAAAGGGTTCGCCGATCAGGCGATGCT
CGATCTTGGTGTTGATCAGCGTGACATTGGCCTTTCCATGTCCCGTGATG
GGCAGCAGAAGGATGCGGCCGGACATCTCGTAGTCGCCAATCATCTCTAT
GCGATCCGTTCGGCTATCACAGATAATCAAGTGCTTATCCAGATCGGTTC
TGTACCGCTGGATCTTGCTGGTGGAGATCATGTCGTGCACCTTCACATTC
TTCAAGGCCTGGCGCAGATTTATTGGCGCATTGCCGGCGTCTATAACGAG
TTTCTTTACGGTCAGCGGTTCGAGGGGCGGGATGCCAAATTCCCTATTGC
CCGCCTTCAGCTGCTGTATCGCCACATTGACGGCATCCACCAGGCATTTG
TCGAAGTTCGCGTCCCGTTTGCACTTGGGAAAGCCTTCGGGCAATTCTTG
CGCAGCCGTTACAGTAAGTTCCTGCGCAACCGCAGCGATTAGCAGCAGCA
TTAGTAGTAGCGAGTATTTTGACATGTCGACTGATAACT

BS11293.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-PA 759 CG13618-RA 1..759 775..17 3795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..938 775..17 3795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527450 452..17 2180 100 Minus
3R 32079331 3R 24526750..24526901 601..450 760 100 Minus
3R 32079331 3R 24526599..24526689 690..600 455 100 Minus
3R 32079331 3R 24524973..24525057 775..691 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:42:38 has no hits.

BS11293.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:42 Download gff for BS11293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..759 17..775 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:43 Download gff for BS11293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..759 17..775 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:15:56 Download gff for BS11293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..944 11..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:36 Download gff for BS11293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..944 11..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:36 Download gff for BS11293.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24526599..24526688 601..690 100 -> Minus
3R 24526751..24526901 450..600 100 -> Minus
3R 24524968..24525057 691..781 95 -> Minus
3R 24527018..24527456 11..449 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:15:56 Download gff for BS11293.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20350690..20350779 691..781 95 -> Minus
arm_3R 20352321..20352410 601..690 100 -> Minus
arm_3R 20352473..20352623 450..600 100 -> Minus
arm_3R 20352740..20353178 11..449 99   Minus

BS11293.5prime Sequence

789 bp (788 high quality bases) assembled on 2006-04-18

> BS11293.5prime
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTTAAAAGCTTTCTAGACC

BS11293.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-PA 759 CG13618-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..938 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527450 340..775 2180 100 Plus
3R 32079331 3R 24526750..24526901 191..342 760 100 Plus
3R 32079331 3R 24526599..24526689 102..192 455 100 Plus
3R 32079331 3R 24524973..24525057 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:49:05 has no hits.

BS11293.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:43 Download gff for BS11293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:44 Download gff for BS11293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:04 Download gff for BS11293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..944 17..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:37 Download gff for BS11293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..944 17..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:37 Download gff for BS11293.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24524968..24525057 11..101 95 -> Plus
3R 24526599..24526688 102..191 100 -> Plus
3R 24526751..24526901 192..342 100 -> Plus
3R 24527018..24527456 343..781 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:04 Download gff for BS11293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20352321..20352410 102..191 100 -> Plus
arm_3R 20350690..20350779 11..101 95 -> Plus
arm_3R 20352473..20352623 192..342 100 -> Plus
arm_3R 20352740..20353178 343..781 99   Plus

BS11293.complete Sequence

791 bp assembled on 2006-11-01

GenBank Submission: FJ636808

> BS11293.complete
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTTAAAAGCTTTCTAGACCAT

BS11293.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 759 CG13618-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..938 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527450 340..775 2180 100 Plus
3R 32079331 3R 24526750..24526901 191..342 760 100 Plus
3R 32079331 3R 24526599..24526689 102..192 455 100 Plus
3R 32079331 3R 24524973..24525057 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:01:45 has no hits.

BS11293.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:58 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:14 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 174..938 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:40 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..936 17..773 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:58 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 174..938 17..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:42 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..936 17..773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:42 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24524973..24525057 17..101 100 -> Plus
3R 24526599..24526688 102..191 100 -> Plus
3R 24526751..24526901 192..342 100 -> Plus
3R 24527018..24527448 343..773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:40 Download gff for BS11293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20352473..20352623 192..342 100 -> Plus
arm_3R 20350695..20350779 17..101 100 -> Plus
arm_3R 20352321..20352410 102..191 100 -> Plus
arm_3R 20352740..20353170 343..773 100   Plus

BS11293.pep Sequence

Translation from 16 to 774

> BS11293.pep
MSKYSLLLMLLLIAAVAQELTVTAAQELPEGFPKCKRDANFDKCLVDAVN
VAIQQLKAGNREFGIPPLEPLTVKKLVIDAGNAPINLRQALKNVKVHDMI
STSKIQRYRTDLDKHLIICDSRTDRIEMIGDYEMSGRILLLPITGHGKAN
VTLINTKIEHRLIGEPFEKDGVKYMRLKDYRVSFDPKRVYMNFENLFNDK
TLSDGMNRFLNENWETVFNELKVGYAKSFGIIFRELSNKLFEKVPFDNIF
LS*

BS11293.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-PA 252 CG13618-PA 1..252 1..252 1294 100 Plus
CG11854-PB 250 CG11854-PB 3..249 6..251 327 32.4 Plus
CG10407-PB 259 CG10407-PB 1..256 1..249 326 30.7 Plus
CG10407-PA 259 CG10407-PA 1..256 1..249 326 30.7 Plus
to-PB 249 CG11853-PB 1..245 9..250 281 29 Plus