Clone Sequence Records
BS11294.3prime Sequence
917 bp (839 high quality bases) assembled on 2006-04-18
> BS11294.3prime
ATGGTCTAGAAAGCTTTTAAAAGTCACGTTTACTGCTTTTTGATTTACCC
GAACTCGATTTACTAGAGCCAGTTTCGCCCCGCTTACGTTTATTTAGAGG
ATTTCGTGGATCGTAGGCATCGTACCAATCGTCGCCCTTTTTATTGGCAT
CCTTAGCTAAAACCGGAGTCGTACTATTAAAATTTAAGGTATGCGACAAC
CAATCGTCGCCGATTATTTCCTGTTCTACTACGCGATCGTCTATATCCTT
CGGTTCCGATTCGCCATCATCAGAGCTTGACTTTTGCTTCAAGTTATCCA
GTTTCGTTCGGAACTTGGAGAGTAGGCTCAATGTAAATGCCTCTCTTGAC
TGTCCCTTCGGTTGAAGCTTTACTTTGGCGGTGTACTTCTCCTTAGACTC
TATAAAATCGTTAATATAATGGTTTTCGCTGGACCCCTTGATTTCATTGG
ACTTTGCTGCTTTCTCTTGTCCATTAACTAGTTTGTCTTTGCTCTGCTTA
TCCATTTGATACTGCTTTTTCAGAGAAGCGATTTCCTCACGGATCTTGGA
TTTTTCCTCCGAGACTTTTCGACTTTGTTCCTCCTCCCGTGTTAACAAAA
CATCCTCGTCATCCTCAGAATCAGACTTTTCCTCCACTGGCTGAACTTTT
TTGTCTGCTCCACTCTTTGATCTCTTAGACAGTTTCATTTTGATGAGATC
CGAACTAGCAGTGGACGGTTTATCCTTGACACTGTCCTCAGGGCAATCGT
CGGACAAGTGCTCCTCGATGTCGGCTTTTTCTACTTTGGGTACACGAATG
GGCTCCTTGCTGAGTTTTGGATCATCTGTGACGTCGTGCAGGGATTTCGC
CTTACCGGCGTTCTGTTTAACATAGACGTTGGTCTCCTCCTCGTCACCTT
CGGCTTCTTCGCCAAAA
BS11294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-PA | 1509 | CG10907-RA | 609..1509 | 917..17 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1610 | CG10907-RA | 682..1583 | 917..16 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11794372..11794737 | 917..552 | 1830 | 100 | Minus |
3L | 28110227 | 3L | 11795061..11795391 | 346..16 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 11794797..11795003 | 551..345 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:45:55 has no hits.
BS11294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:44 Download gff for
BS11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 613..1509 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:46 Download gff for
BS11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 613..1509 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 05:06:49 Download gff for
BS11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 686..1583 | 16..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:13 Download gff for
BS11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 686..1583 | 16..913 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:13 Download gff for
BS11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11794376..11794737 | 552..913 | 100 | -> | Minus |
3L | 11794797..11795003 | 345..551 | 100 | -> | Minus |
3L | 11795063..11795391 | 16..344 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 05:06:49 Download gff for
BS11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11787476..11787837 | 552..913 | 100 | -> | Minus |
arm_3L | 11787897..11788103 | 345..551 | 100 | -> | Minus |
arm_3L | 11788163..11788491 | 16..344 | 100 | | Minus |
BS11294.5prime Sequence
907 bp (750 high quality bases) assembled on 2006-04-18
> BS11294.5prime
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTAAGAGATCAAAGAGTGGAGCAGACAAAAAAGGTCA
GCCAGTG
BS11294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-PA | 1509 | CG10907-RA | 1..891 | 17..907 | 4430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1610 | CG10907-RA | 74..964 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11793587..11794176 | 17..606 | 2950 | 100 | Plus |
3L | 28110227 | 3L | 11794354..11794654 | 607..907 | 1490 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:00:44 has no hits.
BS11294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:45 Download gff for
BS11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:48 Download gff for
BS11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:14 Download gff for
BS11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..964 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:36 Download gff for
BS11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..964 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:36 Download gff for
BS11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11793587..11794176 | 17..606 | 100 | -> | Plus |
3L | 11794354..11794654 | 607..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:14 Download gff for
BS11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11786687..11787276 | 17..606 | 100 | -> | Plus |
arm_3L | 11787454..11787754 | 607..907 | 99 | | Plus |
BS11294.complete Sequence
1541 bp assembled on 2006-11-01
GenBank Submission: FJ636809
> BS11294.complete
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTAAGAGATCAAAGAGTGGAGCAGACAAAAAAGTTCA
GCCAGTGGAGGAAAAGTCTGATTCTGAGGATGACGAGGATGTTTTGTTAA
CACGGGAGGAGGAACAAAGTCGAAAAGTCTCGGAGGAAAAATCCAAGATC
CGTGAGGAAATCGCTTCTCTGAAAAAGCAGTATCAAATGGATAAGCAGAG
CAAAGACAAACTAGTTAATGGACAAGAGAAAGCAGCAAAGTCCAATGAAA
TCAAGGGGTCCAGCGAAAACCATTATATTAACGATTTTATAGAGTCTAAG
GAGAAGTACACCGCCAAAGTAAAGCTTCAACCGAAGGGACAGTCAAGAGA
GGCATTTACATTGAGCCTACTCTCCAAGTTCCGAACGAAACTGGATAACT
TGAAGCAAAAGTCAAGCTCTGATGATGGCGAATCGGAACCGAAGGATATA
GACGATCGCGTAGTAGAACAGGAAATAATCGGCGACGATTGGTTGTCGCA
TACCTTAAATTTTAATAGTACGACTCCGGTTTTAGCTAAGGATGCCAATA
AAAAGGGCGACGATTGGTACGATGCCTACGATCCACGAAATCCTCTAAAT
AAACGTAAGCGGGGCGAAACTGGCTCTAGTAAATCGAGTTCGGGTAAATC
AAAAAGCAGTAAACGTGACTTTTAAAAGCTTTCTAGACCAT
BS11294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1509 | CG10907-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1610 | CG10907-RA | 74..1583 | 17..1526 | 7550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11793587..11794176 | 17..606 | 2950 | 100 | Plus |
3L | 28110227 | 3L | 11794354..11794737 | 607..990 | 1920 | 100 | Plus |
3L | 28110227 | 3L | 11795061..11795391 | 1196..1526 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 11794797..11795003 | 991..1197 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:54:42 has no hits.
BS11294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:01 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 1..1509 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:17 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 44..1553 | 17..1526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:40 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..1580 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:01 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 44..1553 | 17..1526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:11 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..1580 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:11 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11793587..11794176 | 17..606 | 100 | -> | Plus |
3L | 11794354..11794737 | 607..990 | 100 | -> | Plus |
3L | 11794797..11795003 | 991..1197 | 100 | -> | Plus |
3L | 11795063..11795388 | 1198..1523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:40 Download gff for
BS11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11786687..11787276 | 17..606 | 100 | -> | Plus |
arm_3L | 11787454..11787837 | 607..990 | 100 | -> | Plus |
arm_3L | 11787897..11788103 | 991..1197 | 100 | -> | Plus |
arm_3L | 11788163..11788488 | 1198..1523 | 100 | | Plus |
BS11294.pep Sequence
Translation from 16 to 1524
> BS11294.pep
MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK
NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG
MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD
HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG
LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK
ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK
SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV
NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS
LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN
STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR
DF*
BS11294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-PA | 502 | CG10907-PA | 1..502 | 1..502 | 2604 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 280..506 | 13..250 | 416 | 37.9 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..173 | 15..166 | 379 | 46.4 | Plus |
CG11777-PA | 161 | CG11777-PA | 3..121 | 15..133 | 333 | 52.9 | Plus |
CG3511-PB | 637 | CG3511-PB | 484..602 | 15..133 | 327 | 52.9 | Plus |