Clone BS11294 Report

Search the DGRC for BS11294

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG10907-RA
Protein status:BS11294.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11294.3prime Sequence

917 bp (839 high quality bases) assembled on 2006-04-18

> BS11294.3prime
ATGGTCTAGAAAGCTTTTAAAAGTCACGTTTACTGCTTTTTGATTTACCC
GAACTCGATTTACTAGAGCCAGTTTCGCCCCGCTTACGTTTATTTAGAGG
ATTTCGTGGATCGTAGGCATCGTACCAATCGTCGCCCTTTTTATTGGCAT
CCTTAGCTAAAACCGGAGTCGTACTATTAAAATTTAAGGTATGCGACAAC
CAATCGTCGCCGATTATTTCCTGTTCTACTACGCGATCGTCTATATCCTT
CGGTTCCGATTCGCCATCATCAGAGCTTGACTTTTGCTTCAAGTTATCCA
GTTTCGTTCGGAACTTGGAGAGTAGGCTCAATGTAAATGCCTCTCTTGAC
TGTCCCTTCGGTTGAAGCTTTACTTTGGCGGTGTACTTCTCCTTAGACTC
TATAAAATCGTTAATATAATGGTTTTCGCTGGACCCCTTGATTTCATTGG
ACTTTGCTGCTTTCTCTTGTCCATTAACTAGTTTGTCTTTGCTCTGCTTA
TCCATTTGATACTGCTTTTTCAGAGAAGCGATTTCCTCACGGATCTTGGA
TTTTTCCTCCGAGACTTTTCGACTTTGTTCCTCCTCCCGTGTTAACAAAA
CATCCTCGTCATCCTCAGAATCAGACTTTTCCTCCACTGGCTGAACTTTT
TTGTCTGCTCCACTCTTTGATCTCTTAGACAGTTTCATTTTGATGAGATC
CGAACTAGCAGTGGACGGTTTATCCTTGACACTGTCCTCAGGGCAATCGT
CGGACAAGTGCTCCTCGATGTCGGCTTTTTCTACTTTGGGTACACGAATG
GGCTCCTTGCTGAGTTTTGGATCATCTGTGACGTCGTGCAGGGATTTCGC
CTTACCGGCGTTCTGTTTAACATAGACGTTGGTCTCCTCCTCGTCACCTT
CGGCTTCTTCGCCAAAA

BS11294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 1509 CG10907-RA 609..1509 917..17 4505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1610 CG10907-RA 682..1583 917..16 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11794372..11794737 917..552 1830 100 Minus
3L 28110227 3L 11795061..11795391 346..16 1655 100 Minus
3L 28110227 3L 11794797..11795003 551..345 1035 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:45:55 has no hits.

BS11294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:44 Download gff for BS11294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 613..1509 17..913 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:46 Download gff for BS11294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 613..1509 17..913 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 05:06:49 Download gff for BS11294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 686..1583 16..913 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:13 Download gff for BS11294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 686..1583 16..913 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:13 Download gff for BS11294.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11794376..11794737 552..913 100 -> Minus
3L 11794797..11795003 345..551 100 -> Minus
3L 11795063..11795391 16..344 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 05:06:49 Download gff for BS11294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11787476..11787837 552..913 100 -> Minus
arm_3L 11787897..11788103 345..551 100 -> Minus
arm_3L 11788163..11788491 16..344 100   Minus

BS11294.5prime Sequence

907 bp (750 high quality bases) assembled on 2006-04-18

> BS11294.5prime
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTAAGAGATCAAAGAGTGGAGCAGACAAAAAAGGTCA
GCCAGTG

BS11294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 1509 CG10907-RA 1..891 17..907 4430 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1610 CG10907-RA 74..964 17..907 4440 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11793587..11794176 17..606 2950 100 Plus
3L 28110227 3L 11794354..11794654 607..907 1490 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 11:00:44 has no hits.

BS11294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:45 Download gff for BS11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:48 Download gff for BS11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:14 Download gff for BS11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..964 17..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:36 Download gff for BS11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..964 17..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:36 Download gff for BS11294.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11793587..11794176 17..606 100 -> Plus
3L 11794354..11794654 607..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:14 Download gff for BS11294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11786687..11787276 17..606 100 -> Plus
arm_3L 11787454..11787754 607..907 99   Plus

BS11294.complete Sequence

1541 bp assembled on 2006-11-01

GenBank Submission: FJ636809

> BS11294.complete
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTAAGAGATCAAAGAGTGGAGCAGACAAAAAAGTTCA
GCCAGTGGAGGAAAAGTCTGATTCTGAGGATGACGAGGATGTTTTGTTAA
CACGGGAGGAGGAACAAAGTCGAAAAGTCTCGGAGGAAAAATCCAAGATC
CGTGAGGAAATCGCTTCTCTGAAAAAGCAGTATCAAATGGATAAGCAGAG
CAAAGACAAACTAGTTAATGGACAAGAGAAAGCAGCAAAGTCCAATGAAA
TCAAGGGGTCCAGCGAAAACCATTATATTAACGATTTTATAGAGTCTAAG
GAGAAGTACACCGCCAAAGTAAAGCTTCAACCGAAGGGACAGTCAAGAGA
GGCATTTACATTGAGCCTACTCTCCAAGTTCCGAACGAAACTGGATAACT
TGAAGCAAAAGTCAAGCTCTGATGATGGCGAATCGGAACCGAAGGATATA
GACGATCGCGTAGTAGAACAGGAAATAATCGGCGACGATTGGTTGTCGCA
TACCTTAAATTTTAATAGTACGACTCCGGTTTTAGCTAAGGATGCCAATA
AAAAGGGCGACGATTGGTACGATGCCTACGATCCACGAAATCCTCTAAAT
AAACGTAAGCGGGGCGAAACTGGCTCTAGTAAATCGAGTTCGGGTAAATC
AAAAAGCAGTAAACGTGACTTTTAAAAGCTTTCTAGACCAT

BS11294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1509 CG10907-PA 1..1509 17..1525 7545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1610 CG10907-RA 74..1583 17..1526 7550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11793587..11794176 17..606 2950 100 Plus
3L 28110227 3L 11794354..11794737 607..990 1920 100 Plus
3L 28110227 3L 11795061..11795391 1196..1526 1655 100 Plus
3L 28110227 3L 11794797..11795003 991..1197 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:54:42 has no hits.

BS11294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:01 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 17..1525 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:17 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 44..1553 17..1526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:40 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..1580 17..1523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:01 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 44..1553 17..1526 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:11 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..1580 17..1523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:11 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11793587..11794176 17..606 100 -> Plus
3L 11794354..11794737 607..990 100 -> Plus
3L 11794797..11795003 991..1197 100 -> Plus
3L 11795063..11795388 1198..1523 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:40 Download gff for BS11294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11786687..11787276 17..606 100 -> Plus
arm_3L 11787454..11787837 607..990 100 -> Plus
arm_3L 11787897..11788103 991..1197 100 -> Plus
arm_3L 11788163..11788488 1198..1523 100   Plus

BS11294.pep Sequence

Translation from 16 to 1524

> BS11294.pep
MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK
NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG
MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD
HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG
LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK
ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK
SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV
NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS
LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN
STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR
DF*

BS11294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 502 CG10907-PA 1..502 1..502 2604 100 Plus
CG7747-PA 517 CG7747-PA 280..506 13..250 416 37.9 Plus
Cypl-PA 176 CG13892-PA 23..173 15..166 379 46.4 Plus
CG11777-PA 161 CG11777-PA 3..121 15..133 333 52.9 Plus
CG3511-PB 637 CG3511-PB 484..602 15..133 327 52.9 Plus