Clone Sequence Records
BS11296.3prime Sequence
720 bp (719 high quality bases) assembled on 2006-04-18
> BS11296.3prime
ATGGTCTAGAAAGCTTTCACATCCAGACGGCATTGTTGCGGCGGCTTTGG
TTCTTTACGCTGCTGTAGAGCAGCCAACCGAAAACAGCTCCCACAGCCTC
TCCGATGACAAGCAACCAGCAGACGATTTTGAACACCAGTAACTTATCGT
CCAGATACTTCACGAATGCGGCCTTGCAGCCCGTCTTGAAGACCCTGCTC
GGAGTGTCCATGCACTTGCTTTCTGGACAACAGCTGGACGGAATGCCATG
ATGGATGATCCAGTAGTCCTCGGAACTGTTGACCCCGCAGCACTGCAGCC
AGGACTCGTAGTAGCTCAAGGCGCCTGTTTGGTTGCGCTCCGATTCCCAG
AGACGGTCGAATCCCTCGTTGATGCTGCCCGAGATTCCATCCTTGGTGCC
GTGTGAGGACATGCCGAGAAAAATTAGCTGGGCGAGGATCAGCAGCACCA
CGGCTCCCACATATATGAGGAGCCTCACAGGAGCCTCATGGATGGCAGCC
AGGCAGCCGAAGATCGCAATGATGAGGATGACAACGCCCAAGGCGATGAT
TAGGCCCCCGGCCACATTTTTCCCAATGCTGACTGCATTCTCAGCGGCGG
AGATCAAAAAGAAAATTCCGAAGGCGATCAGCGCCAGCCCGAGCACGGAA
AACACAAAGTTCAGCAAAAGCAGCACATGCTTCACTGTAGTGGCGCCCAG
ACCCATGTCGACTGATAACT
BS11296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12843-PA | 690 | Tsp42Ei-RA | 1..690 | 706..17 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ei-RB | 1140 | CG12843-RB | 211..901 | 707..17 | 3455 | 100 | Minus |
| Tsp42Ei-RA | 1304 | CG12843-RA | 211..901 | 707..17 | 3455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7036043..7036409 | 463..97 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 7035470..7035652 | 646..464 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 7036464..7036546 | 99..17 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 7035335..7035398 | 707..644 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 04:06:41 has no hits.
BS11296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:48 Download gff for
BS11296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12843-PA | 1..690 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:52 Download gff for
BS11296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12843-PA | 1..690 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:01:17 Download gff for
BS11296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 204..912 | 7..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:31:06 Download gff for
BS11296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 204..912 | 7..714 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:31:06 Download gff for
BS11296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7035328..7035395 | 647..714 | 95 | -> | Minus |
| 2R | 7035470..7035652 | 464..646 | 100 | -> | Minus |
| 2R | 7036043..7036408 | 98..463 | 100 | -> | Minus |
| 2R | 7036466..7036557 | 7..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:01:17 Download gff for
BS11296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2922833..2922900 | 647..714 | 95 | -> | Minus |
| arm_2R | 2922975..2923157 | 464..646 | 100 | -> | Minus |
| arm_2R | 2923548..2923913 | 98..463 | 100 | -> | Minus |
| arm_2R | 2923971..2924062 | 7..97 | 95 | | Minus |
BS11296.5prime Sequence
720 bp (719 high quality bases) assembled on 2006-04-18
> BS11296.5prime
GAAGTTATCAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGC
TGCTTTTGCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCC
TTCGGAATTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGG
GAAAAATGTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCA
TCATTGCGATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGG
CTCCTCATATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAAT
TTTTCTCGGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCA
TCAACGAGGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGC
GCCTTGAGCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTC
CGAGGACTACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAG
AAAGCAAGTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAG
GCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGT
CTGCTGGTTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGC
TGCTCTACAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGG
ATGTGAAAGCTTTCTAGACC
BS11296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12843-PA | 690 | Tsp42Ei-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ei-RB | 1140 | CG12843-RB | 211..901 | 16..706 | 3455 | 100 | Plus |
| Tsp42Ei-RA | 1304 | CG12843-RA | 211..901 | 16..706 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7036043..7036409 | 260..626 | 1835 | 100 | Plus |
| 2R | 25286936 | 2R | 7035470..7035652 | 77..259 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 7036464..7036546 | 624..706 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 7035335..7035398 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:57:40 has no hits.
BS11296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:49 Download gff for
BS11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12843-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:53 Download gff for
BS11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12843-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:12 Download gff for
BS11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 204..912 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:17 Download gff for
BS11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 204..912 | 9..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:17 Download gff for
BS11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7035470..7035652 | 77..259 | 100 | -> | Plus |
| 2R | 7035328..7035395 | 9..76 | 95 | -> | Plus |
| 2R | 7036043..7036408 | 260..625 | 100 | -> | Plus |
| 2R | 7036466..7036557 | 626..716 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:12 Download gff for
BS11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2922833..2922900 | 9..76 | 95 | -> | Plus |
| arm_2R | 2922975..2923157 | 77..259 | 100 | -> | Plus |
| arm_2R | 2923548..2923913 | 260..625 | 100 | -> | Plus |
| arm_2R | 2923971..2924062 | 626..716 | 95 | | Plus |
BS11296.complete Sequence
722 bp assembled on 2006-11-01
GenBank Submission: FJ636810
> BS11296.complete
GAAGTTATCAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGC
TGCTTTTGCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCC
TTCGGAATTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGG
GAAAAATGTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCA
TCATTGCGATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGG
CTCCTCATATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAAT
TTTTCTCGGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCA
TCAACGAGGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGC
GCCTTGAGCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTC
CGAGGACTACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAG
AAAGCAAGTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAG
GCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGT
CTGCTGGTTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGC
TGCTCTACAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGG
ATGTGAAAGCTTTCTAGACCAT
BS11296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ei-RB | 690 | CG12843-PB | 1..690 | 17..706 | 3450 | 100 | Plus |
| Tsp42Ei-RA | 690 | CG12843-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ei-RB | 1140 | CG12843-RB | 211..901 | 16..706 | 3455 | 100 | Plus |
| Tsp42Ei-RA | 1304 | CG12843-RA | 211..901 | 16..706 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7036043..7036409 | 260..626 | 1835 | 100 | Plus |
| 2R | 25286936 | 2R | 7035470..7035652 | 77..259 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 7036464..7036546 | 624..706 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 7035335..7035398 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:51:58 has no hits.
BS11296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:03 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:20 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 202..910 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:04 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 212..900 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:03 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 202..910 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:48 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 212..900 | 17..705 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:48 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7035336..7035395 | 17..76 | 100 | -> | Plus |
| 2R | 7035470..7035652 | 77..259 | 100 | -> | Plus |
| 2R | 7036043..7036408 | 260..625 | 100 | -> | Plus |
| 2R | 7036466..7036545 | 626..705 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:04 Download gff for
BS11296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2922841..2922900 | 17..76 | 100 | -> | Plus |
| arm_2R | 2922975..2923157 | 77..259 | 100 | -> | Plus |
| arm_2R | 2923548..2923913 | 260..625 | 100 | -> | Plus |
| arm_2R | 2923971..2924050 | 626..705 | 100 | | Plus |
BS11296.pep Sequence
Translation from 16 to 705
> BS11296.pep
MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG
GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS
SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI
IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV
IGEAVGAVFGWLLYSSVKNQSRRNNAVWM*
BS11296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ei-PB | 229 | CG12843-PB | 1..229 | 1..229 | 1185 | 100 | Plus |
| Tsp42Ei-PA | 229 | CG12843-PA | 1..229 | 1..229 | 1185 | 100 | Plus |
| Tsp42Eh-PB | 231 | CG12844-PB | 8..226 | 8..223 | 323 | 31.8 | Plus |
| Tsp42Ef-PA | 220 | CG12845-PA | 5..218 | 6..224 | 266 | 29 | Plus |
| Tsp42El-PA | 217 | CG12840-PA | 1..216 | 1..225 | 239 | 28.1 | Plus |
