Clone Sequence Records
BS11301.3prime Sequence
576 bp (575 high quality bases) assembled on 2006-04-18
> BS11301.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCCTGGTGGTGGTGGGTCCGCCCATG
CGCTCCAGCTCGTCCTTCAGGTCGAGCAGCTCCTTGTCGGGCACGTAGCG
CCGCTCCTCGCAGTCGTCGGTGTACTCCTGCACCTGCAAGCTCACACCCT
CGGGCAGCGCCGCCTGGGCCAGGCGCAAGAACTGCGGATAGACTGGCGCA
TCCACATTGTTCAGCTGCAGGTTGCGCTCGTAGGTGGTCAGCTTGTACTC
CGATTCGATGACCGTGGAGTTGGGCCGCAGTCGCTGCACCGTGGTCTTTT
GCGGAGGGAGGGCGTAGCAGTCGGAGACGTCCAAGTCCAGGTACTCGGCC
AATCCGTGCAGAAACCTCTGGTAGCTCTCCAGCTGCGGGTAGTCGTAGCC
CTTGATCTGCACATTCAGGCTCTCGTACTGCGGGAATTTCGGCTTGAGGG
ACTCCAGGTAATCCGGTTCGTAAACACTTCCACTGGTGCTCCTCACGGCT
GTTGTGGTTGCTTTGGGCACCTGCAGCGCCAGCCGCACACTTGGCAGTAT
CCTGCGTAGCATGTCGACTGATAACT
BS11301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17642-PA | 546 | mRpL48-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 690 | CG17642-RB | 65..610 | 562..17 | 2730 | 100 | Minus |
mRpL48-RA | 790 | CG17642-RA | 65..610 | 562..17 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1710849..1711285 | 453..17 | 2185 | 100 | Minus |
2L | 23513712 | 2L | 1710598..1710697 | 551..452 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 04:06:53 has no hits.
BS11301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:51 Download gff for
BS11301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:55 Download gff for
BS11301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:01:19 Download gff for
BS11301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 13..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:31:07 Download gff for
BS11301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 13..570 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:31:07 Download gff for
BS11301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710590..1710697 | 452..559 | 96 | -> | Minus |
2L | 1710851..1711287 | 13..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:01:19 Download gff for
BS11301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1710590..1710697 | 452..559 | 96 | -> | Minus |
arm_2L | 1710851..1711287 | 13..451 | 99 | | Minus |
BS11301.5prime Sequence
576 bp (575 high quality bases) assembled on 2006-04-18
> BS11301.5prime
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGTAGAAGCTTTCTAGACC
BS11301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17642-PA | 546 | mRpL48-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 690 | CG17642-RB | 65..610 | 17..562 | 2730 | 100 | Plus |
mRpL48-RA | 790 | CG17642-RA | 65..610 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1710849..1711285 | 126..562 | 2185 | 100 | Plus |
2L | 23513712 | 2L | 1710598..1710697 | 28..127 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:48:30 has no hits.
BS11301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:52 Download gff for
BS11301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:56 Download gff for
BS11301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:49:31 Download gff for
BS11301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 9..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:29 Download gff for
BS11301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 9..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:29 Download gff for
BS11301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
2L | 1710851..1711287 | 128..566 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:49:31 Download gff for
BS11301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
arm_2L | 1710851..1711287 | 128..566 | 99 | | Plus |
BS11301.complete Sequence
578 bp assembled on 2007-10-17
GenBank Submission: FJ636811
> BS11301.complete
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGTAGAAGCTTTCTAGACCAT
BS11301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 546 | CG17642-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
mRpL48-RA | 546 | CG17642-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 690 | CG17642-RB | 65..610 | 17..562 | 2730 | 100 | Plus |
mRpL48-RA | 790 | CG17642-RA | 65..610 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1710849..1711285 | 126..562 | 2185 | 100 | Plus |
2L | 23513712 | 2L | 1710598..1710697 | 28..127 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:09:02 has no hits.
BS11301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:52 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:37 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 54..608 | 9..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:25 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 65..610 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:34 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 61..606 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:50 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 65..610 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:50 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
2L | 1710851..1711285 | 128..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:25 Download gff for
BS11301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
arm_2L | 1710851..1711285 | 128..562 | 100 | | Plus |
BS11301.pep Sequence
Translation from 16 to 561
> BS11301.pep
MLRRILPSVRLALQVPKATTTAVRSTSGSVYEPDYLESLKPKFPQYESLN
VQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYALPPQKTTVQRLRPNST
VIESEYKLTTYERNLQLNNVDAPVYPQFLRLAQAALPEGVSLQVQEYTDD
CEERRYVPDKELLDLKDELERMGGPTTTRKK*
BS11301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-PB | 181 | CG17642-PB | 1..181 | 1..181 | 934 | 100 | Plus |
mRpL48-PA | 181 | CG17642-PA | 1..181 | 1..181 | 934 | 100 | Plus |