Clone BS11301 Report

Search the DGRC for BS11301

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL48-RA
Protein status:BS11301.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11301.3prime Sequence

576 bp (575 high quality bases) assembled on 2006-04-18

> BS11301.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCCTGGTGGTGGTGGGTCCGCCCATG
CGCTCCAGCTCGTCCTTCAGGTCGAGCAGCTCCTTGTCGGGCACGTAGCG
CCGCTCCTCGCAGTCGTCGGTGTACTCCTGCACCTGCAAGCTCACACCCT
CGGGCAGCGCCGCCTGGGCCAGGCGCAAGAACTGCGGATAGACTGGCGCA
TCCACATTGTTCAGCTGCAGGTTGCGCTCGTAGGTGGTCAGCTTGTACTC
CGATTCGATGACCGTGGAGTTGGGCCGCAGTCGCTGCACCGTGGTCTTTT
GCGGAGGGAGGGCGTAGCAGTCGGAGACGTCCAAGTCCAGGTACTCGGCC
AATCCGTGCAGAAACCTCTGGTAGCTCTCCAGCTGCGGGTAGTCGTAGCC
CTTGATCTGCACATTCAGGCTCTCGTACTGCGGGAATTTCGGCTTGAGGG
ACTCCAGGTAATCCGGTTCGTAAACACTTCCACTGGTGCTCCTCACGGCT
GTTGTGGTTGCTTTGGGCACCTGCAGCGCCAGCCGCACACTTGGCAGTAT
CCTGCGTAGCATGTCGACTGATAACT

BS11301.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17642-PA 546 mRpL48-RA 1..546 562..17 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 690 CG17642-RB 65..610 562..17 2730 100 Minus
mRpL48-RA 790 CG17642-RA 65..610 562..17 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711285 453..17 2185 100 Minus
2L 23513712 2L 1710598..1710697 551..452 500 100 Minus
Blast to na_te.dros performed on 2015-02-09 04:06:53 has no hits.

BS11301.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:51 Download gff for BS11301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:55 Download gff for BS11301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:01:19 Download gff for BS11301.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 13..570 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:31:07 Download gff for BS11301.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 13..570 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:31:07 Download gff for BS11301.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1710590..1710697 452..559 96 -> Minus
2L 1710851..1711287 13..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:01:19 Download gff for BS11301.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710590..1710697 452..559 96 -> Minus
arm_2L 1710851..1711287 13..451 99   Minus

BS11301.5prime Sequence

576 bp (575 high quality bases) assembled on 2006-04-18

> BS11301.5prime
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGTAGAAGCTTTCTAGACC

BS11301.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17642-PA 546 mRpL48-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 690 CG17642-RB 65..610 17..562 2730 100 Plus
mRpL48-RA 790 CG17642-RA 65..610 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711285 126..562 2185 100 Plus
2L 23513712 2L 1710598..1710697 28..127 500 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:48:30 has no hits.

BS11301.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:52 Download gff for BS11301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:56 Download gff for BS11301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:49:31 Download gff for BS11301.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 9..566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:29 Download gff for BS11301.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 9..566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:29 Download gff for BS11301.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1710590..1710697 20..127 96 -> Plus
2L 1710851..1711287 128..566 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:49:31 Download gff for BS11301.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710590..1710697 20..127 96 -> Plus
arm_2L 1710851..1711287 128..566 99   Plus

BS11301.complete Sequence

578 bp assembled on 2007-10-17

GenBank Submission: FJ636811

> BS11301.complete
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGTAGAAGCTTTCTAGACCAT

BS11301.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 546 CG17642-PB 1..546 17..562 2730 100 Plus
mRpL48-RA 546 CG17642-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 690 CG17642-RB 65..610 17..562 2730 100 Plus
mRpL48-RA 790 CG17642-RA 65..610 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711285 126..562 2185 100 Plus
2L 23513712 2L 1710598..1710697 28..127 500 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:09:02 has no hits.

BS11301.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:52 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:37 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 54..608 9..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:25 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 65..610 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:34 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 61..606 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:50 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 65..610 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:50 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710590..1710697 20..127 96 -> Plus
2L 1710851..1711285 128..562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:25 Download gff for BS11301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710590..1710697 20..127 96 -> Plus
arm_2L 1710851..1711285 128..562 100   Plus

BS11301.pep Sequence

Translation from 16 to 561

> BS11301.pep
MLRRILPSVRLALQVPKATTTAVRSTSGSVYEPDYLESLKPKFPQYESLN
VQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYALPPQKTTVQRLRPNST
VIESEYKLTTYERNLQLNNVDAPVYPQFLRLAQAALPEGVSLQVQEYTDD
CEERRYVPDKELLDLKDELERMGGPTTTRKK*

BS11301.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-PB 181 CG17642-PB 1..181 1..181 934 100 Plus
mRpL48-PA 181 CG17642-PA 1..181 1..181 934 100 Plus