Clone Sequence Records
BS11302.3prime Sequence
902 bp (841 high quality bases) assembled on 2006-04-18
> BS11302.3prime
ATGGTCTAGAAAGCTTTTAATAATCTAAAGACCATTCATTCTCGGCAATA
AAAGAGTCAACCACTTCCTTCATTGAAAAATTTGGTATTAGTTGATCCTG
AGTGAGCTTAACGCGTGTCACAGGATCGAAATGTCCAACCCGCTGCAAGT
GTTCTTCTATATCTTTTCGTTCATACGTAATTCCAGATGGAGTTATCACA
GGGTCTGTTAATATTTCAAAACTTATTTTGCCACATAGAAAATCGGGAAC
TTCACGTTTCTTTCGACGTTCGTCAACCTTAGAAAATATATTGTTAAGTT
CCTTAATATGGTCATCGCATTCTTGCTCAATTTCCTGTTGCTTGTCTTTC
AGCTGCTCATCGTGTACATTTCCATTCAGCTTTAAATTGGCCAAACGGCT
TTCCATGTCCCCTTTTATTAGACCATTTAAATAGCTTTGCAGCTCGATTT
CCTGCTGTATTCGCTTCTCCTCCATAACATTCCAGCGCTTTTTGCGAGCT
AGTCGCAACTGTAGTGTAATATCATCCCCAAAGTTTTGCTTCTGCTCCTT
GGACAGATCGTATGCCCGTTGAAGGTGCTTTATAGCCTCGTCAAAGTTGT
CGATTTCCATGAGTCCTTGGCCCAGGAAGAAGTGACCCTTCAACAGATTC
CCATCGATGTCGAGGGCGCGCCGACTATCCTGGCAGCACAGTTCCCATCT
CTTCAGTTTCAGGTTGCAGAGGGCTCGGTTTGTGAAGTATGTGGCGTTTG
TGGGGTTCTTTATGATGGCCTTTGAGTAGCAATTTATTGCGTCGTCATAT
TTTCGGGCTGCAAACAAGCAGTTTCCCTGCTCCTTTAATTGCAGATCTGA
TAAATTGGTCGTGGAATAGATGTGCTTGGTCGTCATGTCGACTGATAACT
TT
BS11302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5203-PA | 870 | CHIP-RA | 1..870 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 1277 | CG5203-RA | 292..1161 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10438880..10439124 | 261..17 | 1225 | 100 | Minus |
2L | 23513712 | 2L | 10438041..10438239 | 763..565 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10438300..10438442 | 565..423 | 715 | 100 | Minus |
2L | 23513712 | 2L | 10437839..10437961 | 886..764 | 615 | 100 | Minus |
2L | 23513712 | 2L | 10438590..10438697 | 423..316 | 540 | 100 | Minus |
2L | 23513712 | 2L | 10438756..10438812 | 316..260 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-07 02:13:12 has no hits.
BS11302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:53 Download gff for
BS11302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-PA | 1..870 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:57 Download gff for
BS11302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5203-PA | 1..870 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:24:56 Download gff for
BS11302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 284..1167 | 8..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:03:26 Download gff for
BS11302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 284..1167 | 8..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:03:26 Download gff for
BS11302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10438756..10438812 | 260..316 | 100 | -> | Minus |
2L | 10438882..10439130 | 8..259 | 98 | | Minus |
2L | 10437831..10437961 | 764..895 | 96 | -> | Minus |
2L | 10438041..10438239 | 565..763 | 100 | -> | Minus |
2L | 10438301..10438442 | 423..564 | 100 | -> | Minus |
2L | 10438591..10438696 | 317..422 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:24:56 Download gff for
BS11302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10438756..10438812 | 260..316 | 100 | -> | Minus |
arm_2L | 10438882..10439130 | 8..259 | 98 | | Minus |
arm_2L | 10437831..10437961 | 764..895 | 96 | -> | Minus |
arm_2L | 10438041..10438239 | 565..763 | 100 | -> | Minus |
arm_2L | 10438301..10438442 | 423..564 | 100 | -> | Minus |
arm_2L | 10438591..10438696 | 317..422 | 100 | -> | Minus |
BS11302.5prime Sequence
900 bp (859 high quality bases) assembled on 2006-04-18
> BS11302.5prime
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCT
TTTATTGCCGAGAATGAATGGTCTTTAGATTATTAAAAGCTTTCTAGACC
BS11302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5203-PA | 870 | CHIP-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 1277 | CG5203-RA | 292..1161 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10438880..10439124 | 642..886 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 10438041..10438239 | 140..338 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10438300..10438442 | 338..480 | 715 | 100 | Plus |
2L | 23513712 | 2L | 10437839..10437961 | 17..139 | 615 | 100 | Plus |
2L | 23513712 | 2L | 10438590..10438697 | 480..587 | 540 | 100 | Plus |
2L | 23513712 | 2L | 10438756..10438812 | 587..643 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:55:35 has no hits.
BS11302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:54 Download gff for
BS11302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:59 Download gff for
BS11302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5203-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:30 Download gff for
BS11302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 284..1167 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:06:07 Download gff for
BS11302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 284..1167 | 8..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:06:07 Download gff for
BS11302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10437831..10437961 | 8..139 | 96 | -> | Plus |
2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
2L | 10438882..10439130 | 644..895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:30 Download gff for
BS11302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10437831..10437961 | 8..139 | 96 | -> | Plus |
arm_2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
arm_2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
arm_2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
arm_2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
arm_2L | 10438882..10439130 | 644..895 | 98 | | Plus |
BS11302.complete Sequence
902 bp assembled on 2006-11-01
GenBank Submission: FJ636812
> BS11302.complete
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCT
TTTATTGCCGAGAATGAATGGTCTTTAGATTATTAAAAGCTTTCTAGACC
AT
BS11302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 870 | CG5203-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 1277 | CG5203-RA | 292..1161 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10438880..10439124 | 642..886 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 10438041..10438239 | 140..338 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10438300..10438442 | 338..480 | 715 | 100 | Plus |
2L | 23513712 | 2L | 10437839..10437961 | 17..139 | 615 | 100 | Plus |
2L | 23513712 | 2L | 10438590..10438697 | 480..587 | 540 | 100 | Plus |
2L | 23513712 | 2L | 10438756..10438812 | 587..643 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:31:38 has no hits.
BS11302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:45 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:01 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 281..1164 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:44 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 292..1159 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:45 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 281..1164 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:04 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 292..1159 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:04 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10437839..10437961 | 17..139 | 100 | -> | Plus |
2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
2L | 10438882..10439122 | 644..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:44 Download gff for
BS11302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10437839..10437961 | 17..139 | 100 | -> | Plus |
arm_2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
arm_2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
arm_2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
arm_2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
arm_2L | 10438882..10439122 | 644..884 | 100 | | Plus |
BS11302.pep Sequence
Translation from 16 to 885
> BS11302.pep
MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATY
FTNRALCNLKLKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDE
AIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQEIELQ
SYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDHIKELNNI
FSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRV
GHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDY*
BS11302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-PA | 289 | CG5203-PA | 1..289 | 1..289 | 1519 | 100 | Plus |