Clone BS11302 Report

Search the DGRC for BS11302

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCHIP-RA
Protein status:BS11302.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11302.3prime Sequence

902 bp (841 high quality bases) assembled on 2006-04-18

> BS11302.3prime
ATGGTCTAGAAAGCTTTTAATAATCTAAAGACCATTCATTCTCGGCAATA
AAAGAGTCAACCACTTCCTTCATTGAAAAATTTGGTATTAGTTGATCCTG
AGTGAGCTTAACGCGTGTCACAGGATCGAAATGTCCAACCCGCTGCAAGT
GTTCTTCTATATCTTTTCGTTCATACGTAATTCCAGATGGAGTTATCACA
GGGTCTGTTAATATTTCAAAACTTATTTTGCCACATAGAAAATCGGGAAC
TTCACGTTTCTTTCGACGTTCGTCAACCTTAGAAAATATATTGTTAAGTT
CCTTAATATGGTCATCGCATTCTTGCTCAATTTCCTGTTGCTTGTCTTTC
AGCTGCTCATCGTGTACATTTCCATTCAGCTTTAAATTGGCCAAACGGCT
TTCCATGTCCCCTTTTATTAGACCATTTAAATAGCTTTGCAGCTCGATTT
CCTGCTGTATTCGCTTCTCCTCCATAACATTCCAGCGCTTTTTGCGAGCT
AGTCGCAACTGTAGTGTAATATCATCCCCAAAGTTTTGCTTCTGCTCCTT
GGACAGATCGTATGCCCGTTGAAGGTGCTTTATAGCCTCGTCAAAGTTGT
CGATTTCCATGAGTCCTTGGCCCAGGAAGAAGTGACCCTTCAACAGATTC
CCATCGATGTCGAGGGCGCGCCGACTATCCTGGCAGCACAGTTCCCATCT
CTTCAGTTTCAGGTTGCAGAGGGCTCGGTTTGTGAAGTATGTGGCGTTTG
TGGGGTTCTTTATGATGGCCTTTGAGTAGCAATTTATTGCGTCGTCATAT
TTTCGGGCTGCAAACAAGCAGTTTCCCTGCTCCTTTAATTGCAGATCTGA
TAAATTGGTCGTGGAATAGATGTGCTTGGTCGTCATGTCGACTGATAACT
TT

BS11302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5203-PA 870 CHIP-RA 1..870 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 1277 CG5203-RA 292..1161 886..17 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10438880..10439124 261..17 1225 100 Minus
2L 23513712 2L 10438041..10438239 763..565 995 100 Minus
2L 23513712 2L 10438300..10438442 565..423 715 100 Minus
2L 23513712 2L 10437839..10437961 886..764 615 100 Minus
2L 23513712 2L 10438590..10438697 423..316 540 100 Minus
2L 23513712 2L 10438756..10438812 316..260 285 100 Minus
Blast to na_te.dros performed on 2015-02-07 02:13:12 has no hits.

BS11302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:53 Download gff for BS11302.3prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-PA 1..870 17..886 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:57 Download gff for BS11302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5203-PA 1..870 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:24:56 Download gff for BS11302.3prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 284..1167 8..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:03:26 Download gff for BS11302.3prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 284..1167 8..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:03:26 Download gff for BS11302.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10438756..10438812 260..316 100 -> Minus
2L 10438882..10439130 8..259 98   Minus
2L 10437831..10437961 764..895 96 -> Minus
2L 10438041..10438239 565..763 100 -> Minus
2L 10438301..10438442 423..564 100 -> Minus
2L 10438591..10438696 317..422 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:24:56 Download gff for BS11302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10438756..10438812 260..316 100 -> Minus
arm_2L 10438882..10439130 8..259 98   Minus
arm_2L 10437831..10437961 764..895 96 -> Minus
arm_2L 10438041..10438239 565..763 100 -> Minus
arm_2L 10438301..10438442 423..564 100 -> Minus
arm_2L 10438591..10438696 317..422 100 -> Minus

BS11302.5prime Sequence

900 bp (859 high quality bases) assembled on 2006-04-18

> BS11302.5prime
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCT
TTTATTGCCGAGAATGAATGGTCTTTAGATTATTAAAAGCTTTCTAGACC

BS11302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5203-PA 870 CHIP-RA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 1277 CG5203-RA 292..1161 17..886 4350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10438880..10439124 642..886 1225 100 Plus
2L 23513712 2L 10438041..10438239 140..338 995 100 Plus
2L 23513712 2L 10438300..10438442 338..480 715 100 Plus
2L 23513712 2L 10437839..10437961 17..139 615 100 Plus
2L 23513712 2L 10438590..10438697 480..587 540 100 Plus
2L 23513712 2L 10438756..10438812 587..643 285 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:55:35 has no hits.

BS11302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:54 Download gff for BS11302.5prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:33:59 Download gff for BS11302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5203-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:30 Download gff for BS11302.5prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 284..1167 8..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:06:07 Download gff for BS11302.5prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 284..1167 8..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:06:07 Download gff for BS11302.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10437831..10437961 8..139 96 -> Plus
2L 10438041..10438239 140..338 100 -> Plus
2L 10438301..10438442 339..480 100 -> Plus
2L 10438591..10438696 481..586 100 -> Plus
2L 10438756..10438812 587..643 100 -> Plus
2L 10438882..10439130 644..895 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:30 Download gff for BS11302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10437831..10437961 8..139 96 -> Plus
arm_2L 10438041..10438239 140..338 100 -> Plus
arm_2L 10438301..10438442 339..480 100 -> Plus
arm_2L 10438591..10438696 481..586 100 -> Plus
arm_2L 10438756..10438812 587..643 100 -> Plus
arm_2L 10438882..10439130 644..895 98   Plus

BS11302.complete Sequence

902 bp assembled on 2006-11-01

GenBank Submission: FJ636812

> BS11302.complete
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCT
TTTATTGCCGAGAATGAATGGTCTTTAGATTATTAAAAGCTTTCTAGACC
AT

BS11302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 870 CG5203-PA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 1277 CG5203-RA 292..1161 17..886 4350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10438880..10439124 642..886 1225 100 Plus
2L 23513712 2L 10438041..10438239 140..338 995 100 Plus
2L 23513712 2L 10438300..10438442 338..480 715 100 Plus
2L 23513712 2L 10437839..10437961 17..139 615 100 Plus
2L 23513712 2L 10438590..10438697 480..587 540 100 Plus
2L 23513712 2L 10438756..10438812 587..643 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:31:38 has no hits.

BS11302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:45 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:01 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 281..1164 8..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:44 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 292..1159 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:45 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 281..1164 8..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:04 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 292..1159 17..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:04 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10437839..10437961 17..139 100 -> Plus
2L 10438041..10438239 140..338 100 -> Plus
2L 10438301..10438442 339..480 100 -> Plus
2L 10438591..10438696 481..586 100 -> Plus
2L 10438756..10438812 587..643 100 -> Plus
2L 10438882..10439122 644..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:44 Download gff for BS11302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10437839..10437961 17..139 100 -> Plus
arm_2L 10438041..10438239 140..338 100 -> Plus
arm_2L 10438301..10438442 339..480 100 -> Plus
arm_2L 10438591..10438696 481..586 100 -> Plus
arm_2L 10438756..10438812 587..643 100 -> Plus
arm_2L 10438882..10439122 644..884 100   Plus

BS11302.pep Sequence

Translation from 16 to 885

> BS11302.pep
MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATY
FTNRALCNLKLKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDE
AIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQEIELQ
SYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDHIKELNNI
FSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRV
GHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDY*

BS11302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-PA 289 CG5203-PA 1..289 1..289 1519 100 Plus