Clone BS11304 Report

Search the DGRC for BS11304

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptPpa-RA
Protein status:BS11304.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11304.3prime Sequence

888 bp (842 high quality bases) assembled on 2006-04-18

> BS11304.3prime
ATGGTCTAGAAAGCTTTCACCTGACCAGCCAGAGGCCCAGGTTGAGCTTC
TGCAGCTTGGGCAGCTTCATGATGATGTCGATGCCCTTGGAACTGAGTTG
CGTGCAGCCGTAGAGATCGATGGTCTTGAGATTAGTCAGATCCTCGGCCA
GCGTTTGCAGGCCCTTGTCCGTTATCCGGCTGCACTGTCCGATATTGAGG
TTCTCCAACTCGTGCAATGCCTTGGCGATCTTTAGCATGCCGTGATCGGT
GATCTGGCACTGATTGAGGGACAGGGATCTCAGTCTGTAGAGTCCCTGGG
CTATGTGTGTCAGGGCCTGGTCGCTGATCTTGTCGCAGAAACTGACGTCC
AGCGAGTTGATCCCGCTGCCGCCTTCCGTGAGGTAGGCCATTCCGATATC
CGAGATGTTGTCGCAGGAGCGCAAGTTCAGCTGCTCGAGCTTGGGCATCC
GGGCCAGGTGCTTTAGTCCGCTGTCCGTCACCGAGACGCAGAAGCTCAGG
TTGATCGACTTCAGCGAGGTCAGGCCCTGGGCAATGTGGCCCAAAGCCTC
GTCGCTTAGCCGCTGGCAATCCTGCAGACCCAAGTACTCCAGCTGCAGGT
TGCCTTCGGCCGTTTCCCGCGAGAAACCAGCCAGGTGTCCGATTCCCTGG
TCGCTGATGTGCCAGCAGGAGCGCAGATTGAGGTGCTTCAGCTTCTTCAG
GCCCCACGCAATGAGCAGCAGTCCTGTGTTCGTGATGTTGCAACAGCCGC
CCAGTTCCAGGGTCTCAAGATTCCTTAGATGCTGGGCGATGCGCCCCAGA
CTCGTGTCCGTGATCTGTTTACAGAGGGAGAGGTCCAGTGTCTTGAGGTT
TGGCAGATCCACGCTAAAGGCATGGCCCAGGTTCATGT

BS11304.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9952-PA 1617 ppa-RA 746..1617 888..17 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 4033 CG9952-RC 1012..1883 888..17 4360 100 Minus
Ppa-RB 3463 CG9952-RB 1012..1883 888..17 4360 100 Minus
Ppa-RA 3463 CG9952-RA 1012..1883 888..17 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22687105..22687976 17..888 4360 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:05:41 has no hits.

BS11304.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:57 Download gff for BS11304.3prime
Subject Subject Range Query Range Percent Splice Strand
ppa-PA 746..1617 17..888 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:03 Download gff for BS11304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9952-PA 746..1617 17..888 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:04 Download gff for BS11304.3prime
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 1012..1886 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:11 Download gff for BS11304.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppa-RA 1012..1886 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:11 Download gff for BS11304.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22687102..22687976 13..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:04 Download gff for BS11304.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18574607..18575481 13..888 99   Plus

BS11304.5prime Sequence

918 bp (851 high quality bases) assembled on 2006-04-18

> BS11304.5prime
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
ACCTCAAGACACTGGACCTCTCCCTCTGTAAACAGATCACGGACACGAGT
CTGGGGCGCATCGCCCAGCATCTAAGGAATCTTGAGACCCTGGAACTGGG
CGGCTGTTTGCACATCAC

BS11304.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9952-PA 1617 ppa-RA 1..892 17..908 4460 100 Plus
CG1597-PA 2661 CG1597-RA 181..215 338..372 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 4033 CG9952-RC 267..1168 17..918 4465 99.8 Plus
Ppa-RB 3463 CG9952-RB 267..1168 17..918 4465 99.8 Plus
Ppa-RA 3463 CG9952-RA 267..1168 17..918 4465 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22687820..22688721 918..17 4465 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 20:07:40 has no hits.

BS11304.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:59 Download gff for BS11304.5prime
Subject Subject Range Query Range Percent Splice Strand
ppa-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:04 Download gff for BS11304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9952-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:50 Download gff for BS11304.5prime
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 259..1168 10..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:48 Download gff for BS11304.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppa-RA 259..1168 10..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:48 Download gff for BS11304.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22687820..22688726 10..918 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:50 Download gff for BS11304.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18575325..18576231 10..918 99   Minus

BS11304.complete Sequence

1649 bp assembled on 2006-11-01

GenBank Submission: FJ636814

> BS11304.complete
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
ACCTCAAGACACTGGACCTCTCCCTCTGTAAACAGATCACGGACACGAGT
CTGGGGCGCATCGCCCAGCATCTAAGGAATCTTGAGACCCTGGAACTGGG
CGGCTGTTGCAACATCACGAACACAGGACTGCTGCTCATTGCGTGGGGCC
TGAAGAAGCTGAAGCACCTCAATCTGCGCTCCTGCTGGCACATCAGCGAC
CAGGGAATCGGACACCTGGCTGGTTTCTCGCGGGAAACGGCCGAAGGCAA
CCTGCAGCTGGAGTACTTGGGTCTGCAGGATTGCCAGCGGCTAAGCGACG
AGGCTTTGGGCCACATTGCCCAGGGCCTGACCTCGCTGAAGTCGATCAAC
CTGAGCTTCTGCGTCTCGGTGACGGACAGCGGACTAAAGCACCTGGCCCG
GATGCCCAAGCTCGAGCAGCTGAACTTGCGCTCCTGCGACAACATCTCGG
ATATCGGAATGGCCTACCTCACGGAAGGCGGCAGCGGGATCAACTCGCTG
GACGTCAGTTTCTGCGACAAGATCAGCGACCAGGCCCTGACACACATAGC
CCAGGGACTCTACAGACTGAGATCCCTGTCCCTCAATCAGTGCCAGATCA
CCGATCACGGCATGCTAAAGATCGCCAAGGCATTGCACGAGTTGGAGAAC
CTCAATATCGGACAGTGCAGCCGGATAACGGACAAGGGCCTGCAAACGCT
GGCCGAGGATCTGACTAATCTCAAGACCATCGATCTCTACGGCTGCACGC
AACTCAGTTCCAAGGGCATCGACATCATCATGAAGCTGCCCAAGCTGCAG
AAGCTCAACCTGGGCCTCTGGCTGGTCAGGTGAAAGCTTTCTAGACCAT

BS11304.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 1617 CG9952-PC 1..1617 17..1633 8085 100 Plus
Ppa-RB 1689 CG9952-PB 1..1617 17..1633 8085 100 Plus
Ppa-RA 1617 CG9952-PA 1..1617 17..1633 8085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 4033 CG9952-RC 267..1883 17..1633 8085 100 Plus
Ppa-RB 3463 CG9952-RB 267..1883 17..1633 8085 100 Plus
Ppa-RA 3463 CG9952-RA 267..1883 17..1633 8085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22687105..22688721 1633..17 8085 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:43:13 has no hits.

BS11304.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:47 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 1..1617 17..1633 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:02 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 245..1872 10..1637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:21 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 267..1882 17..1632 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:47 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 245..1872 10..1637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:15 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
Ppa-RA 267..1882 17..1632 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:15 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22687106..22688721 17..1632 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:21 Download gff for BS11304.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18574611..18576226 17..1632 100   Minus

BS11304.pep Sequence

Translation from 16 to 1632

> BS11304.pep
MATNTELLPFHHQTIAVLNNLNSHCGGSGSNGAATSGGAAIGGAGAGGAP
SWAMDELYQQTELPGLTRTGATTTHHHLLRFTPYALHHRPPHHQLQTLPP
ALYLQHAAAAAAAAAAAAAHAQHHHHHHHHLPHRPASPESPPPVEGTHIS
NLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKR
SSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADM
NLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNI
TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY
LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLE
QLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYR
LRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLT
NLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVR*

BS11304.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-PC 538 CG9952-PC 1..538 1..538 2826 100 Plus
Ppa-PB 562 CG9952-PB 1..538 1..538 2826 100 Plus
Ppa-PA 538 CG9952-PA 1..538 1..538 2826 100 Plus
CG32085-PA 666 CG32085-PA 227..641 108..532 390 28.9 Plus
CG9003-PC 426 CG9003-PC 15..376 149..532 370 27.8 Plus
CG32085-PA 666 CG32085-PA 482..657 235..420 226 32.3 Plus