Clone Sequence Records
BS11304.3prime Sequence
888 bp (842 high quality bases) assembled on 2006-04-18
> BS11304.3prime
ATGGTCTAGAAAGCTTTCACCTGACCAGCCAGAGGCCCAGGTTGAGCTTC
TGCAGCTTGGGCAGCTTCATGATGATGTCGATGCCCTTGGAACTGAGTTG
CGTGCAGCCGTAGAGATCGATGGTCTTGAGATTAGTCAGATCCTCGGCCA
GCGTTTGCAGGCCCTTGTCCGTTATCCGGCTGCACTGTCCGATATTGAGG
TTCTCCAACTCGTGCAATGCCTTGGCGATCTTTAGCATGCCGTGATCGGT
GATCTGGCACTGATTGAGGGACAGGGATCTCAGTCTGTAGAGTCCCTGGG
CTATGTGTGTCAGGGCCTGGTCGCTGATCTTGTCGCAGAAACTGACGTCC
AGCGAGTTGATCCCGCTGCCGCCTTCCGTGAGGTAGGCCATTCCGATATC
CGAGATGTTGTCGCAGGAGCGCAAGTTCAGCTGCTCGAGCTTGGGCATCC
GGGCCAGGTGCTTTAGTCCGCTGTCCGTCACCGAGACGCAGAAGCTCAGG
TTGATCGACTTCAGCGAGGTCAGGCCCTGGGCAATGTGGCCCAAAGCCTC
GTCGCTTAGCCGCTGGCAATCCTGCAGACCCAAGTACTCCAGCTGCAGGT
TGCCTTCGGCCGTTTCCCGCGAGAAACCAGCCAGGTGTCCGATTCCCTGG
TCGCTGATGTGCCAGCAGGAGCGCAGATTGAGGTGCTTCAGCTTCTTCAG
GCCCCACGCAATGAGCAGCAGTCCTGTGTTCGTGATGTTGCAACAGCCGC
CCAGTTCCAGGGTCTCAAGATTCCTTAGATGCTGGGCGATGCGCCCCAGA
CTCGTGTCCGTGATCTGTTTACAGAGGGAGAGGTCCAGTGTCTTGAGGTT
TGGCAGATCCACGCTAAAGGCATGGCCCAGGTTCATGT
BS11304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9952-PA | 1617 | ppa-RA | 746..1617 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 4033 | CG9952-RC | 1012..1883 | 888..17 | 4360 | 100 | Minus |
Ppa-RB | 3463 | CG9952-RB | 1012..1883 | 888..17 | 4360 | 100 | Minus |
Ppa-RA | 3463 | CG9952-RA | 1012..1883 | 888..17 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22687105..22687976 | 17..888 | 4360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:05:41 has no hits.
BS11304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:57 Download gff for
BS11304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-PA | 746..1617 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:03 Download gff for
BS11304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9952-PA | 746..1617 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:04 Download gff for
BS11304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 1012..1886 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:11 Download gff for
BS11304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppa-RA | 1012..1886 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:11 Download gff for
BS11304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22687102..22687976 | 13..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:04 Download gff for
BS11304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18574607..18575481 | 13..888 | 99 | | Plus |
BS11304.5prime Sequence
918 bp (851 high quality bases) assembled on 2006-04-18
> BS11304.5prime
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
ACCTCAAGACACTGGACCTCTCCCTCTGTAAACAGATCACGGACACGAGT
CTGGGGCGCATCGCCCAGCATCTAAGGAATCTTGAGACCCTGGAACTGGG
CGGCTGTTTGCACATCAC
BS11304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9952-PA | 1617 | ppa-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
CG1597-PA | 2661 | CG1597-RA | 181..215 | 338..372 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 4033 | CG9952-RC | 267..1168 | 17..918 | 4465 | 99.8 | Plus |
Ppa-RB | 3463 | CG9952-RB | 267..1168 | 17..918 | 4465 | 99.8 | Plus |
Ppa-RA | 3463 | CG9952-RA | 267..1168 | 17..918 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22687820..22688721 | 918..17 | 4465 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:07:40 has no hits.
BS11304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:04:59 Download gff for
BS11304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:04 Download gff for
BS11304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9952-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:50 Download gff for
BS11304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 259..1168 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:48 Download gff for
BS11304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppa-RA | 259..1168 | 10..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:48 Download gff for
BS11304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22687820..22688726 | 10..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:50 Download gff for
BS11304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18575325..18576231 | 10..918 | 99 | | Minus |
BS11304.complete Sequence
1649 bp assembled on 2006-11-01
GenBank Submission: FJ636814
> BS11304.complete
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
ACCTCAAGACACTGGACCTCTCCCTCTGTAAACAGATCACGGACACGAGT
CTGGGGCGCATCGCCCAGCATCTAAGGAATCTTGAGACCCTGGAACTGGG
CGGCTGTTGCAACATCACGAACACAGGACTGCTGCTCATTGCGTGGGGCC
TGAAGAAGCTGAAGCACCTCAATCTGCGCTCCTGCTGGCACATCAGCGAC
CAGGGAATCGGACACCTGGCTGGTTTCTCGCGGGAAACGGCCGAAGGCAA
CCTGCAGCTGGAGTACTTGGGTCTGCAGGATTGCCAGCGGCTAAGCGACG
AGGCTTTGGGCCACATTGCCCAGGGCCTGACCTCGCTGAAGTCGATCAAC
CTGAGCTTCTGCGTCTCGGTGACGGACAGCGGACTAAAGCACCTGGCCCG
GATGCCCAAGCTCGAGCAGCTGAACTTGCGCTCCTGCGACAACATCTCGG
ATATCGGAATGGCCTACCTCACGGAAGGCGGCAGCGGGATCAACTCGCTG
GACGTCAGTTTCTGCGACAAGATCAGCGACCAGGCCCTGACACACATAGC
CCAGGGACTCTACAGACTGAGATCCCTGTCCCTCAATCAGTGCCAGATCA
CCGATCACGGCATGCTAAAGATCGCCAAGGCATTGCACGAGTTGGAGAAC
CTCAATATCGGACAGTGCAGCCGGATAACGGACAAGGGCCTGCAAACGCT
GGCCGAGGATCTGACTAATCTCAAGACCATCGATCTCTACGGCTGCACGC
AACTCAGTTCCAAGGGCATCGACATCATCATGAAGCTGCCCAAGCTGCAG
AAGCTCAACCTGGGCCTCTGGCTGGTCAGGTGAAAGCTTTCTAGACCAT
BS11304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 1617 | CG9952-PC | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Ppa-RB | 1689 | CG9952-PB | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Ppa-RA | 1617 | CG9952-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 4033 | CG9952-RC | 267..1883 | 17..1633 | 8085 | 100 | Plus |
Ppa-RB | 3463 | CG9952-RB | 267..1883 | 17..1633 | 8085 | 100 | Plus |
Ppa-RA | 3463 | CG9952-RA | 267..1883 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22687105..22688721 | 1633..17 | 8085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:43:13 has no hits.
BS11304.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:47 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 1..1617 | 17..1633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:02 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 245..1872 | 10..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:21 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 267..1882 | 17..1632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:47 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 245..1872 | 10..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:15 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppa-RA | 267..1882 | 17..1632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:15 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22687106..22688721 | 17..1632 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:21 Download gff for
BS11304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18574611..18576226 | 17..1632 | 100 | | Minus |
BS11304.pep Sequence
Translation from 16 to 1632
> BS11304.pep
MATNTELLPFHHQTIAVLNNLNSHCGGSGSNGAATSGGAAIGGAGAGGAP
SWAMDELYQQTELPGLTRTGATTTHHHLLRFTPYALHHRPPHHQLQTLPP
ALYLQHAAAAAAAAAAAAAHAQHHHHHHHHLPHRPASPESPPPVEGTHIS
NLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKR
SSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADM
NLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNI
TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY
LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLE
QLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYR
LRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLT
NLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVR*
BS11304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-PC | 538 | CG9952-PC | 1..538 | 1..538 | 2826 | 100 | Plus |
Ppa-PB | 562 | CG9952-PB | 1..538 | 1..538 | 2826 | 100 | Plus |
Ppa-PA | 538 | CG9952-PA | 1..538 | 1..538 | 2826 | 100 | Plus |
CG32085-PA | 666 | CG32085-PA | 227..641 | 108..532 | 390 | 28.9 | Plus |
CG9003-PC | 426 | CG9003-PC | 15..376 | 149..532 | 370 | 27.8 | Plus |
CG32085-PA | 666 | CG32085-PA | 482..657 | 235..420 | 226 | 32.3 | Plus |