Clone Sequence Records
BS11305.3prime Sequence
393 bp (392 high quality bases) assembled on 2006-04-18
> BS11305.3prime
ATGGTCTAGAAAGCTTTTATCCCTGAAGCTGATTGATCAGGCGACGCTGC
CTCACCAGCAGCTGCTCCATCCTGCGCCTCCTCTTTTCCTGGCGCTGTCT
CCGCTCCTGGCGACGACGGCGCTCACGAGCCAGGCGACGACGGCGAGCAC
GTCTGCGCCTCCTGGCCTCCGCCGAGGAGGAGGAAGAGGAGGCAGTGGTC
GTGGTGGATGCGGAGGAGGCAGTGGTGGTAGTGGTGGTGGCGGATGAAGC
CGTGGTAGTGGTGGCAGAGGAGTCGGTGGATGTGGTCGCCGTCGAGGATG
TAGATGTGCTGCTACTGCCCTCCTGAGCCAGGAGCAGACACAGGAGCACG
CTGAGAAGTAGAGCGAATAGGAAGCGCATGTCGACTGATAACT
BS11305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-PA | 363 | CG14454-RA | 1..363 | 379..17 | 1815 | 100 | Minus |
CG32453-PA | 363 | CG32453-RA | 1..362 | 379..18 | 1785 | 99.7 | Minus |
CG12546-PA | 390 | CG12546-RA | 91..182 | 325..234 | 385 | 96.7 | Minus |
CG14452-PA | 354 | CG14452-RA | 55..146 | 325..234 | 385 | 96.7 | Minus |
CG12546-PA | 390 | CG12546-RA | 176..227 | 237..186 | 235 | 98 | Minus |
CG14452-PA | 354 | CG14452-RA | 140..191 | 237..186 | 235 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 445 | CG14454-RB | 17..379 | 379..17 | 1815 | 100 | Minus |
CG14454-RA | 855 | CG14454-RA | 17..379 | 379..17 | 1815 | 100 | Minus |
CG32453-RB | 741 | CG32453-RB | 18..379 | 379..18 | 1795 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22692150..22692512 | 17..379 | 1815 | 100 | Plus |
3L | 28110227 | 3L | 22697247..22697608 | 379..18 | 1795 | 99.7 | Minus |
3L | 28110227 | 3L | 22696024..22696227 | 325..122 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22693532..22693735 | 122..325 | 665 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:48:50 has no hits.
BS11305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:00 Download gff for
BS11305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:06 Download gff for
BS11305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:49:33 Download gff for
BS11305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..379 | 17..387 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:15 Download gff for
BS11305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..379 | 17..387 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:15 Download gff for
BS11305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22692150..22692515 | 17..380 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:49:33 Download gff for
BS11305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22685250..22685615 | 17..380 | 99 | -> | Plus |
BS11305.5prime Sequence
393 bp (392 high quality bases) assembled on 2006-04-18
> BS11305.5prime
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGATAAAAGCTTTCTAGACC
BS11305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-PA | 363 | CG14454-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
CG32453-PA | 363 | CG32453-RA | 1..362 | 17..378 | 1785 | 99.7 | Plus |
CG12546-PA | 390 | CG12546-RA | 91..182 | 71..162 | 385 | 96.7 | Plus |
CG14452-PA | 354 | CG14452-RA | 55..146 | 71..162 | 385 | 96.7 | Plus |
CG12546-PA | 390 | CG12546-RA | 176..227 | 159..210 | 235 | 98 | Plus |
CG14452-PA | 354 | CG14452-RA | 140..191 | 159..210 | 235 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 445 | CG14454-RB | 17..379 | 17..379 | 1815 | 100 | Plus |
CG14454-RA | 855 | CG14454-RA | 17..379 | 17..379 | 1815 | 100 | Plus |
CG32453-RB | 741 | CG32453-RB | 18..379 | 17..378 | 1795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22692150..22692512 | 379..17 | 1815 | 100 | Minus |
3L | 28110227 | 3L | 22697247..22697608 | 17..378 | 1795 | 99.7 | Plus |
3L | 28110227 | 3L | 22693532..22693735 | 274..71 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22696024..22696227 | 71..274 | 665 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:56:52 has no hits.
BS11305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:01 Download gff for
BS11305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:07 Download gff for
BS11305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:08:59 Download gff for
BS11305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..379 | 9..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:43 Download gff for
BS11305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..379 | 9..379 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:43 Download gff for
BS11305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22692150..22692515 | 16..379 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:08:59 Download gff for
BS11305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22685250..22685615 | 16..379 | 99 | -> | Minus |
BS11305.complete Sequence
395 bp assembled on 2007-10-17
GenBank Submission: FJ636815
> BS11305.complete
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGATAAAAGCTTTCTAGACCAT
BS11305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 363 | CG14454-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
CG14454-RA | 363 | CG14454-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
CG32453-RB | 363 | CG32453-PB | 1..362 | 17..378 | 1795 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 445 | CG14454-RB | 17..379 | 17..379 | 1815 | 100 | Plus |
CG14454-RA | 855 | CG14454-RA | 17..379 | 17..379 | 1815 | 100 | Plus |
CG32453-RB | 741 | CG32453-RB | 18..379 | 17..378 | 1795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22692150..22692512 | 379..17 | 1815 | 100 | Minus |
3L | 28110227 | 3L | 22697247..22697608 | 17..378 | 1795 | 99.7 | Plus |
3L | 28110227 | 3L | 22693532..22693735 | 274..71 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22696024..22696227 | 71..274 | 665 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:05:09 has no hits.
BS11305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:53 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:39 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 2..371 | 9..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:58 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 17..377 | 17..377 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:23 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 9..369 | 17..377 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:05 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 17..377 | 17..377 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:05 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22692152..22692512 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:58 Download gff for
BS11305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22685252..22685612 | 17..377 | 100 | | Minus |
BS11305.pep Sequence
Translation from 16 to 378
> BS11305.pep
MRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSATTT
TTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQEKR
RRRMEQLLVRQRRLINQLQG*
BS11305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32453-PB | 120 | CG32453-PB | 1..120 | 1..120 | 559 | 100 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..120 | 1..120 | 559 | 100 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..120 | 1..120 | 559 | 100 | Plus |
CG14454-PA | 120 | CG14454-PA | 1..120 | 1..120 | 559 | 100 | Plus |
CG14452-PA | 117 | CG14452-PA | 1..117 | 1..120 | 408 | 74.2 | Plus |