Clone BS11305 Report

Search the DGRC for BS11305

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG14454-RA
Protein status:BS11305.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11305.3prime Sequence

393 bp (392 high quality bases) assembled on 2006-04-18

> BS11305.3prime
ATGGTCTAGAAAGCTTTTATCCCTGAAGCTGATTGATCAGGCGACGCTGC
CTCACCAGCAGCTGCTCCATCCTGCGCCTCCTCTTTTCCTGGCGCTGTCT
CCGCTCCTGGCGACGACGGCGCTCACGAGCCAGGCGACGACGGCGAGCAC
GTCTGCGCCTCCTGGCCTCCGCCGAGGAGGAGGAAGAGGAGGCAGTGGTC
GTGGTGGATGCGGAGGAGGCAGTGGTGGTAGTGGTGGTGGCGGATGAAGC
CGTGGTAGTGGTGGCAGAGGAGTCGGTGGATGTGGTCGCCGTCGAGGATG
TAGATGTGCTGCTACTGCCCTCCTGAGCCAGGAGCAGACACAGGAGCACG
CTGAGAAGTAGAGCGAATAGGAAGCGCATGTCGACTGATAACT

BS11305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-PA 363 CG14454-RA 1..363 379..17 1815 100 Minus
CG32453-PA 363 CG32453-RA 1..362 379..18 1785 99.7 Minus
CG12546-PA 390 CG12546-RA 91..182 325..234 385 96.7 Minus
CG14452-PA 354 CG14452-RA 55..146 325..234 385 96.7 Minus
CG12546-PA 390 CG12546-RA 176..227 237..186 235 98 Minus
CG14452-PA 354 CG14452-RA 140..191 237..186 235 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 445 CG14454-RB 17..379 379..17 1815 100 Minus
CG14454-RA 855 CG14454-RA 17..379 379..17 1815 100 Minus
CG32453-RB 741 CG32453-RB 18..379 379..18 1795 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22692150..22692512 17..379 1815 100 Plus
3L 28110227 3L 22697247..22697608 379..18 1795 99.7 Minus
3L 28110227 3L 22696024..22696227 325..122 665 90.3 Minus
3L 28110227 3L 22693532..22693735 122..325 665 90.3 Plus
Blast to na_te.dros performed on 2015-02-11 22:48:50 has no hits.

BS11305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:00 Download gff for BS11305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:06 Download gff for BS11305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:49:33 Download gff for BS11305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..379 17..387 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:15 Download gff for BS11305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..379 17..387 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:15 Download gff for BS11305.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22692150..22692515 17..380 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:49:33 Download gff for BS11305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22685250..22685615 17..380 99 -> Plus

BS11305.5prime Sequence

393 bp (392 high quality bases) assembled on 2006-04-18

> BS11305.5prime
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGATAAAAGCTTTCTAGACC

BS11305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-PA 363 CG14454-RA 1..363 17..379 1815 100 Plus
CG32453-PA 363 CG32453-RA 1..362 17..378 1785 99.7 Plus
CG12546-PA 390 CG12546-RA 91..182 71..162 385 96.7 Plus
CG14452-PA 354 CG14452-RA 55..146 71..162 385 96.7 Plus
CG12546-PA 390 CG12546-RA 176..227 159..210 235 98 Plus
CG14452-PA 354 CG14452-RA 140..191 159..210 235 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 445 CG14454-RB 17..379 17..379 1815 100 Plus
CG14454-RA 855 CG14454-RA 17..379 17..379 1815 100 Plus
CG32453-RB 741 CG32453-RB 18..379 17..378 1795 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22692150..22692512 379..17 1815 100 Minus
3L 28110227 3L 22697247..22697608 17..378 1795 99.7 Plus
3L 28110227 3L 22693532..22693735 274..71 665 90.3 Minus
3L 28110227 3L 22696024..22696227 71..274 665 90.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:56:52 has no hits.

BS11305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:01 Download gff for BS11305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:07 Download gff for BS11305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:08:59 Download gff for BS11305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..379 9..379 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:43 Download gff for BS11305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..379 9..379 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:43 Download gff for BS11305.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22692150..22692515 16..379 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:08:59 Download gff for BS11305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22685250..22685615 16..379 99 -> Minus

BS11305.complete Sequence

395 bp assembled on 2007-10-17

GenBank Submission: FJ636815

> BS11305.complete
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGATAAAAGCTTTCTAGACCAT

BS11305.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 363 CG14454-PB 1..363 17..379 1815 100 Plus
CG14454-RA 363 CG14454-PA 1..363 17..379 1815 100 Plus
CG32453-RB 363 CG32453-PB 1..362 17..378 1795 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 445 CG14454-RB 17..379 17..379 1815 100 Plus
CG14454-RA 855 CG14454-RA 17..379 17..379 1815 100 Plus
CG32453-RB 741 CG32453-RB 18..379 17..378 1795 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22692150..22692512 379..17 1815 100 Minus
3L 28110227 3L 22697247..22697608 17..378 1795 99.7 Plus
3L 28110227 3L 22693532..22693735 274..71 665 90.3 Minus
3L 28110227 3L 22696024..22696227 71..274 665 90.3 Plus
Blast to na_te.dros performed on 2014-11-27 02:05:09 has no hits.

BS11305.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:53 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:39 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 2..371 9..379 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:58 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 17..377 17..377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:23 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 9..369 17..377 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:05 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 17..377 17..377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:05 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22692152..22692512 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:58 Download gff for BS11305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22685252..22685612 17..377 100   Minus

BS11305.pep Sequence

Translation from 16 to 378

> BS11305.pep
MRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSATTT
TTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQEKR
RRRMEQLLVRQRRLINQLQG*

BS11305.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-PB 120 CG32453-PB 1..120 1..120 559 100 Plus
CG32453-PA 120 CG32453-PA 1..120 1..120 559 100 Plus
CG14454-PB 120 CG14454-PB 1..120 1..120 559 100 Plus
CG14454-PA 120 CG14454-PA 1..120 1..120 559 100 Plus
CG14452-PA 117 CG14452-PA 1..117 1..120 408 74.2 Plus