Clone Sequence Records
BS11313.3prime Sequence
904 bp (783 high quality bases) assembled on 2006-04-18
> BS11313.3prime
ATGGTCTAGAAAGCTTTTAGAAGGTAATGGGCTTGGTTTTCTCGAACACC
TCGCGTGCCAAACTCCTCATGACCTTGCCGTTGGCGTTCTTGGGGAACTT
GTCCACGAAGATGACTCCGGCATTCAGCTGCTTGTAGTCCACCACCACCC
GCTGGGCCACGTGGTCGATGACCTTCTGGTCGGCGATCTCGGCGCCCTCC
TTCTTGATGATCAGGGCTCCGGCGGCGTCACCGTATCTCGCATCCCGCAC
GCCTACCACGCACACGTGCTCCACCTCCGGGAGCTCGGCGATGATCTGCT
CAATCTCGTTGGGCCAGTAGTGCTTGGACTTGTACTTCAGCAGGTCCTTC
TTGCGGTCCACCAAGTACAGGTTGTTGTCCTCGTCGAAGTAGCCCAGGTC
GCCCAGGTTGATCCATCCATCCTGGAGGGTGGTGGCCGTGTCCTCCGGGT
TCGAGAGGTAGCCCTCCCACTTCAGGCCGATGTCGATGAGCACCTCGCCC
GTCTGATTCACGCCCAGCTGCTGGCCATCCTCGCCTTGGATCTTGATCCT
CATGCCGGGCGCCAGTCTGCCTACAGAGCACTCCAGACTGTGGTCGATGT
TGATGGTCACCACTCCCGTCTCCGTGGTTCCGTACGAGAACATCACGTAG
GTCTTGGGCAGCAGCTCCTGGGCCCGCCGCAGTAGTGCCAGGGATATCCA
TCCTCCAATCACGAAGGCTATCTTCAGGGACTCCAGTTGCTCGCTGGTGG
CCAGTGGACTGGTGAAGAGCTCGTAGGCCTGCCATGGCGCCATTGCCAGG
CAGGTGACCTTGTACTTGCTGACCAGGTAGAGAGCCGTCTCGGCGCTAAA
TGTCCTCCTGGATATGATGCGAGTGAAGCCACATGTGAGATTCATTACGG
TAAT
BS11313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-PA | 1614 | CG4563-RA | 727..1614 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 762..1649 | 904..17 | 4440 | 100 | Minus |
| CG4830-RA | 1861 | CG4830-RA | 1257..1423 | 423..257 | 220 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24451201..24452088 | 17..904 | 4440 | 100 | Plus |
| 3R | 32079331 | 3R | 12208597..12208763 | 257..423 | 220 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:09:20 has no hits.
BS11313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:12 Download gff for
BS11313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-PA | 727..1614 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:19 Download gff for
BS11313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-PA | 727..1614 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:44 Download gff for
BS11313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 762..1654 | 12..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:51 Download gff for
BS11313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 762..1654 | 12..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:51 Download gff for
BS11313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24451196..24452088 | 12..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:44 Download gff for
BS11313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20338719..20339611 | 12..904 | 99 | | Plus |
BS11313.complete Sequence
1646 bp assembled on 2010-06-25
GenBank Submission: KX806046
> BS11313.complete
GAAGTTATCAGTCGACATGCCGACAAAGGCGGTTTTCCCCACCTTCTTCA
ACAAGGAGACCCAGGTCTGGAGTGGCCCGCCACGGCCCACGGTCTACGAC
CACAACACCTCGGTCGGTCAGATCGTGTTCAACTCCCTGAGGTGCTGGCC
CACCAATGTGATTCAGATCACCGACGACGACGGCACCGTGCTGACCAACG
CCGACATGCTGGCCTACGCCACCCGGATTGCCCTATTCTTTAAGAGCGAG
GGCTTGACCCAGGAGGACCGCGTCGGGATCATCGCCAACTCGAGCACCTT
CGTGATCCCCGTGGCCACCGCCTGCTTCTTCCAGGCCACGCCCTTCCACG
CCGTCAACTACTCCAGGGAGCCGGCCATCGTACAGGGTCTCTACTCGGTG
ACCAAACCCAAGATCATGTTCATCGACGGTCCGGACTACGACCGCATCAA
GGAGATCACCAAGGAGTGGTCTCCCAAGCTGATCACGCTCACGGGTAAAG
TGGAGGGCGTTACTAGCATCGAGGACCTCGTAAAGCCCCATCCCGCCGAG
AAGATCTATGTACCTGCTTCCCTGGCCACTGGTGGCGACCAGATCGCCGT
GGTCCTGTGCTCCTCCGGCACTGCTGGCTTGCCCAAGGCAGTTGCCCTCT
CCCACCGCCACATTGCATCCACCAACTCGCTGTGCATCAGTACCGATGTG
CTGTACACCAGTGCCACCATCGACTGGATGACCGGATTCTCGATTACCGT
AATGAATCTCACATGTGGCTTCACTCGCATCATATCCAGGAGGACATTTA
GCGCCGAGACGGCTCTCTACCTGGTCAGCAAGTACAAGGTCACCTGCCTG
GCAATGGCGCCATGGCAGGCCTACGAGCTCTTCACCAGTCCACTGGCCAC
CAGCGAGCAACTGGAGTCCCTGAAGATAGCCTTCGTGATTGGAGGATGGA
TATCCCTGGCACTACTGCGGCGGGCCCAGGAGCTGCTGCCCAAGACCTAC
GTGATGTTCTCGTACGGAACCACGGAGACGGGAGTGGTGACCATCAACAT
CGACCACAGTCTGGAGTGCTCTGTAGGCAGACTGGCGCCCGGCATGAGGA
TCAAGATCCAAGGCGAGGATGGCCAGCAGCTGGGCGTGAATCAGACGGGC
GAGGTGCTCATCGACATCGGCCTGAAGTGGGAGGGCTACCTCTCGAACCC
GGAGGACACGGCCACCACCCTCCAGGATGGATGGATCAACCTGGGCGACC
TGGGCTACTTCGACGAGGACAACAACCTGTACTTGGTGGACCGCAAGAAG
GACCTGCTGAAGTACAAGTCCAAGCACTACTGGCCCAACGAGATTGAGCA
GATCATCGCCGAGCTCCCGGAGGTGGAGCACGTGTGCGTGGTAGGCGTGC
GGGATGCGAGATACGGTGACGCCGCCGGAGCCCTGATCATCAAGAAGGAG
GGCGCCGAGATCGCCGACCAGAAGGTCATCGACCACGTGGCCCAGCGGGT
GGTGGTGGACTACAAGCAGCTGAATGCCGGAGTCATCTTCGTGGACAAGT
TCCCCAAGAACGCCAACGGCAAGGTCATGAGGAGTTTGGCACGCGAGGTG
TTCGAGAAAACCAAGCCCATTACCTTCTAAAAGCTTTCTAGACCAT
BS11313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1614 | CG4563-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| CG4830-RA | 1605 | CG4830-PA | 1202..1368 | 1224..1390 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 36..1649 | 17..1630 | 8070 | 100 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 1257..1423 | 1224..1390 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24451201..24452152 | 1630..679 | 4760 | 100 | Minus |
| 2R | 25286936 | 2R | 24452394..24452790 | 561..165 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 24452856..24453005 | 166..17 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 24452210..24452327 | 679..562 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12208597..12208763 | 1390..1224 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:47:38 has no hits.
BS11313.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:46 Download gff for
BS11313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 33..1644 | 17..1628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:41 Download gff for
BS11313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 36..1647 | 17..1628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:09 Download gff for
BS11313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 36..1647 | 17..1628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:09 Download gff for
BS11313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24452856..24453005 | 17..166 | 100 | | Minus |
| 2R | 24451203..24452152 | 679..1628 | 100 | <- | Minus |
| 2R | 24452211..24452327 | 562..678 | 100 | <- | Minus |
| 2R | 24452394..24452788 | 167..561 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:41 Download gff for
BS11313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20340379..20340528 | 17..166 | 100 | | Minus |
| arm_2R | 20338726..20339675 | 679..1628 | 100 | <- | Minus |
| arm_2R | 20339734..20339850 | 562..678 | 100 | <- | Minus |
| arm_2R | 20339917..20340311 | 167..561 | 100 | <- | Minus |
BS11313.pep Sequence
Translation from 16 to 1629
> BS11313.pep
MPTKAVFPTFFNKETQVWSGPPRPTVYDHNTSVGQIVFNSLRCWPTNVIQ
ITDDDGTVLTNADMLAYATRIALFFKSEGLTQEDRVGIIANSSTFVIPVA
TACFFQATPFHAVNYSREPAIVQGLYSVTKPKIMFIDGPDYDRIKEITKE
WSPKLITLTGKVEGVTSIEDLVKPHPAEKIYVPASLATGGDQIAVVLCSS
GTAGLPKAVALSHRHIASTNSLCISTDVLYTSATIDWMTGFSITVMNLTC
GFTRIISRRTFSAETALYLVSKYKVTCLAMAPWQAYELFTSPLATSEQLE
SLKIAFVIGGWISLALLRRAQELLPKTYVMFSYGTTETGVVTINIDHSLE
CSVGRLAPGMRIKIQGEDGQQLGVNQTGEVLIDIGLKWEGYLSNPEDTAT
TLQDGWINLGDLGYFDEDNNLYLVDRKKDLLKYKSKHYWPNEIEQIIAEL
PEVEHVCVVGVRDARYGDAAGALIIKKEGAEIADQKVIDHVAQRVVVDYK
QLNAGVIFVDKFPKNANGKVMRSLAREVFEKTKPITF*
BS11313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-PA | 537 | CG4563-PA | 1..537 | 1..537 | 2786 | 100 | Plus |
| CG8834-PA | 535 | CG8834-PA | 2..527 | 5..529 | 1257 | 46.5 | Plus |
| CG4830-PA | 534 | CG4830-PA | 5..527 | 8..529 | 1140 | 42.3 | Plus |
| CG11453-PA | 539 | CG11453-PA | 6..525 | 9..527 | 1048 | 39.9 | Plus |
| CG11407-PA | 538 | CG11407-PA | 7..534 | 9..533 | 924 | 36.4 | Plus |
