Clone BS11314 Report

Search the DGRC for BS11314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptChLD3-RA
Protein status:BS11314.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11314.3prime Sequence

889 bp (849 high quality bases) assembled on 2006-04-18

> BS11314.3prime
ATGGTCTAGAAAGCTTTTAGTCCAAGCCGAACTCGTTGCGAATCCAGGGA
TACTGGGCAGGACACTCCATGCAAGTGTAGAAGAATCGATCCTCTTGCAG
CACCCGACTACGCACCTTGCACACATTCGGCGTGTTGCAGACCTGCTCGT
GGGGATCCAAGTCCTTCGGTTGGCAGTGCCAGGACTCGAATTGGTGCAGC
TGGTTGCTGGGCGTGGGATGGCGCATCCACTGAATCGCCTGCTGGTTAGT
CACGAAGAACACATCCGGCAGCTTTTGCAGATCGTCGAGGAATTTCAGAA
ATGCATTCAGATAGTCGACTTTCTTGAACCAAGTCGAATGGAAATACAGG
CCAAATGGTGCCCTATTGCTGAGGTAGTGCCTCTTGAAGTTGTGCGTGAG
CATTCTGTACACATCCTCGCCGCTCAAATGCGGCGGACACGTGTCCACCA
TGCCGCACATATACTCGCCCACTTCCAGTTGGTTCATAACCAGCTCCCAA
ATGCCCGGATAACTCCTAGACGGGCAATTCTGATTTACGCCCGTGCAGCT
GTGCGGCATCTTGTAGTCCAAGGTGTAGGGCCACAGAGGAGGATTCGAAT
GCGGCGCAACCATGGATGAATCGTACACGAAGCCAAACTCCTTCATCATG
AGAAACTGTCGATTCCAGCCGACGCGCAGAAAGGGTACTCTCATGCCACG
AATCTCCTCCATTCGTACCGCTGCGAACTTATTGATTATATTCGCCTGGC
CAACCATCTCATCGAACCAATCCTCAATTGTGGCATTCTTGGACCACCAC
ATCTCTGGGCCACGATGCGTTACTGAGTGCACTGCGATCTCGTGACCATC
GTTCCAAAGCTTCTGCACATACTGATAGTTGGGTAACGG

BS11314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17905-PA 1734 CG17905-RA 869..1734 882..17 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
ChLD3-RA 2265 CG17905-RA 1008..1880 889..17 4335 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16741366..16741888 818..296 2615 100 Minus
2L 23513712 2L 16741946..16742225 296..17 1400 100 Minus
2L 23513712 2L 16741234..16741305 889..818 330 97.2 Minus
Blast to na_te.dros performed on 2015-02-11 11:45:55 has no hits.

BS11314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:13 Download gff for BS11314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17905-PA 862..1734 17..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:20 Download gff for BS11314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17905-PA 862..1734 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:41:17 Download gff for BS11314.3prime
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 1008..1880 17..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:41 Download gff for BS11314.3prime
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 1008..1880 17..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:41 Download gff for BS11314.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16741234..16741304 819..889 97 -> Minus
2L 16741366..16741888 296..818 100 -> Minus
2L 16741947..16742225 17..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:41:17 Download gff for BS11314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16741234..16741304 819..889 97 -> Minus
arm_2L 16741366..16741888 296..818 100 -> Minus
arm_2L 16741947..16742225 17..295 100   Minus

BS11314.5prime Sequence

910 bp (851 high quality bases) assembled on 2006-04-18

> BS11314.5prime
GAAGTTATCAGTCGACATGCTCTGCCCGGGGGAAAATGCCTATAATGCAA
ATGGCCAAACGGGTTTCACAGTCAAGGTCGTCGCTTCCGCCCAGCGACGC
TCGAAGCCACAACCAACAGCGCGAATTCCCAACGCCCACCGCTTACCCAG
TTTGTGCATCTGGATGATGGTGGCGCTTATGATTATGTCGTCGTCGCTGG
ACGCCCTGGTCATTGACAATGATGGAATAGTCGGCAACCAAACTCGGCAT
CGTCGCTCGACCTCCGGCGCAGCCAGTTGCATGCAAGATGCACGCTTCTA
CCGCAACCCCAACAGGCCGGTCCACAAGATCTGGACGAACAGCGAGTGCG
CCAAGTATTTCCTCTGCCTCGACGGTGAGGTGTTCGAATTCAAGTGCTCC
GAGGGATTGCTCTTCGATGTGGTGCGTCAGATCTGCGACTTCAAGGCGAA
TGTGGACAATTGCGATGTCAGCGCGGAGACGCCGGCTCCAAAACCACTAC
TGGAGATGGCCGACTGTGCGGATGAATACCAGTTGGGCTGCGCCGATGGT
ACCTGCCTGCCGCAGGAGTACTTCTGCGATGGTTCGGTAGACTGTCCCGA
CGGCTCCGACGAAGGCTGGTGCGATGTGGAGCACGATCCGAATGCGGCTG
GTGCCTGTGATCCGCGAAAGTGCCATTTGCCGCAGTGCTTCTGCTCGAAG
GATGGCACCCAGATACCCGGCAGTCTTCCGGCACAGAGTGTTCCGCAGAT
GATACTGTTGACCTTCGACGATGCCATCAATCACGATAACTGGGAGCTGT
TCTCCAAGGTTTTGTTCACACAGCACAGGCGAAACCCCAACGGGTGTCCC
ATTAAGGGCACATTCTACGTTTCACATCCGTTTACCAACTATCAGTATGT
GCAGAAGCTT

BS11314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17905-PA 1734 CG17905-RA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
ChLD3-RA 2265 CG17905-RA 147..1040 17..910 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16740571..16741266 215..910 3480 100 Plus
2L 23513712 2L 16738996..16739194 17..215 995 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:04:19 has no hits.

BS11314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:14 Download gff for BS11314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17905-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:21 Download gff for BS11314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17905-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:10 Download gff for BS11314.5prime
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 147..1040 17..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:48 Download gff for BS11314.5prime
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 147..1040 17..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:48 Download gff for BS11314.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16738996..16739194 17..215 100 -> Plus
2L 16740572..16741266 216..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:10 Download gff for BS11314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16738996..16739194 17..215 100 -> Plus
arm_2L 16740572..16741266 216..910 100   Plus

BS11314.complete Sequence

1766 bp assembled on 2007-10-17

GenBank Submission: FJ636816

> BS11314.complete
GAAGTTATCAGTCGACATGCTCTGCCCGGGGGAAAATGCCTATAATGCAA
ATGGCCAAACGGGTTTCACAGTCAAGGTCGTCGCTTCCGCCCAGCGACGC
TCGAAGCCACAACCAACAGCGCGAATTCCCAACGCCCACCGCTTACCCAG
TTTGTGCATCTGGATGATGGTGGCGCTTATGATTATGTCGTCGTCGCTGG
ACGCCCTGGTCATTGACAATGATGGAATAGTCGGCAACCAAACTCGGCAT
CGTCGCTCGACCTCCGGCGCAGCCAGTTGCATGCAAGATGCACGCTTCTA
CCGCAACCCCAACAGGCCGGTCCACAAGATCTGGACGAACAGCGAGTGCG
CCAAGTATTTCCTCTGCCTCGACGGTGAGGTGTTCGAATTCAAGTGCTCC
GAGGGATTGCTCTTCGATGTGGTGCGTCAGATCTGCGACTTCAAGGCGAA
TGTGGACAATTGCGATGTCAGCGCGGAGACGCCGGCTCCAAAACCACTAC
TGGAGATGGCCGACTGTGCGGATGAATACCAGTTGGGCTGCGCCGATGGT
ACCTGCCTGCCGCAGGAGTACTTCTGCGATGGTTCGGTAGACTGTCCCGA
CGGCTCCGACGAAGGCTGGTGCGATGTGGAGCACGATCCGAATGCGGCTG
GTGCCTGTGATCCGCGAAAGTGCCATTTGCCGCAGTGCTTCTGCTCGAAG
GATGGCACCCAGATACCCGGCAGTCTTCCGGCACAGAGTGTTCCGCAGAT
GATACTGTTGACCTTCGACGATGCCATCAATCACGATAACTGGGAGCTGT
TCTCCAAGGTTTTGTTCACACAGCACAGGCGAAACCCCAACGGGTGTCCC
ATTAAGGGCACATTCTACGTTTCACATCCGTTTACCAACTATCAGTATGT
GCAGAAGCTTTGGAACGATGGTCACGAGATCGCAGTGCACTCAGTAACGC
ATCGTGGCCCAGAGATGTGGTGGTCCAAGAATGCCACAATTGAGGATTGG
TTCGATGAGATGGTTGGCCAGGCGAATATAATCAATAAGTTCGCAGCGGT
ACGAATGGAGGAGATTCGTGGCATGAGAGTACCCTTTCTGCGCGTCGGCT
GGAATCGACAGTTTCTCATGATGAAGGAGTTTGGCTTCGTGTACGATTCA
TCCATGGTTGCGCCGCATTCGAATCCTCCTCTGTGGCCCTACACCTTGGA
CTACAAGATGCCGCACAGCTGCACGGGCGTAAATCAGAATTGCCCGTCTA
GGAGTTATCCGGGCATTTGGGAGCTGGTTATGAACCAACTGGAAGTGGGC
GAGTATATGTGCGGCATGGTGGACACGTGTCCGCCGCATTTGAGCGGCGA
GGATGTGTACAGAATGCTCACGCACAACTTCAAGAGGCACTACCTCAGCA
ATAGGGCACCATTTGGCCTGTATTTCCATTCGACTTGGTTCAAGAAAGTC
GACTATCTGAATGCATTTCTGAAATTCCTCGACGATCTGCAAAAGCTGCC
GGATGTGTTCTTCGTGACTAACCAGCAGGCGATTCAGTGGATGCGCCATC
CCACGCCCAGCAACCAGCTGCACCAATTCGAGTCCTGGCACTGCCAACCG
AAGGACTTGGATCCCCACGAGCAGGTCTGCAACACGCCGAATGTGTGCAA
GGTGCGTAGTCGGGTGCTGCAAGAGGATCGATTCTTCTACACTTGCATGG
AGTGTCCTGCCCAGTATCCCTGGATTCGCAACGAGTTCGGCTTGGACTAA
AAGCTTTCTAGACCAT

BS11314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
ChLD3-RA 1734 CG17905-PA 1..1734 17..1750 8670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
ChLD3-RA 2265 CG17905-RA 147..1880 17..1750 8670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16740571..16741305 215..949 3675 100 Plus
2L 23513712 2L 16741366..16741888 949..1471 2615 100 Plus
2L 23513712 2L 16741946..16742225 1471..1750 1400 100 Plus
2L 23513712 2L 16738996..16739194 17..215 995 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:08:21 has no hits.

BS11314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:56 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 1..1734 17..1750 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:42 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 145..1878 17..1750 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:01 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 147..1878 17..1748 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:18 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 145..1876 17..1748 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:20 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
ChLD3-RA 147..1878 17..1748 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:20 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16738996..16739194 17..215 100 -> Plus
2L 16740572..16741304 216..948 100 -> Plus
2L 16741366..16741888 949..1471 100 -> Plus
2L 16741947..16742223 1472..1748 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:01 Download gff for BS11314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16738996..16739194 17..215 100 -> Plus
arm_2L 16740572..16741304 216..948 100 -> Plus
arm_2L 16741366..16741888 949..1471 100 -> Plus
arm_2L 16741947..16742223 1472..1748 100   Plus

BS11314.pep Sequence

Translation from 16 to 1749

> BS11314.pep
MLCPGENAYNANGQTGFTVKVVASAQRRSKPQPTARIPNAHRLPSLCIWM
MVALMIMSSSLDALVIDNDGIVGNQTRHRRSTSGAASCMQDARFYRNPNR
PVHKIWTNSECAKYFLCLDGEVFEFKCSEGLLFDVVRQICDFKANVDNCD
VSAETPAPKPLLEMADCADEYQLGCADGTCLPQEYFCDGSVDCPDGSDEG
WCDVEHDPNAAGACDPRKCHLPQCFCSKDGTQIPGSLPAQSVPQMILLTF
DDAINHDNWELFSKVLFTQHRRNPNGCPIKGTFYVSHPFTNYQYVQKLWN
DGHEIAVHSVTHRGPEMWWSKNATIEDWFDEMVGQANIINKFAAVRMEEI
RGMRVPFLRVGWNRQFLMMKEFGFVYDSSMVAPHSNPPLWPYTLDYKMPH
SCTGVNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDTCPPHLSGEDVYRM
LTHNFKRHYLSNRAPFGLYFHSTWFKKVDYLNAFLKFLDDLQKLPDVFFV
TNQQAIQWMRHPTPSNQLHQFESWHCQPKDLDPHEQVCNTPNVCKVRSRV
LQEDRFFYTCMECPAQYPWIRNEFGLD*

BS11314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
ChLD3-PA 577 CG17905-PA 1..577 1..577 3242 100 Plus
verm-PG 525 CG8756-PG 43..520 104..575 1167 46.2 Plus
serp-PC 541 CG32209-PC 67..537 111..575 1167 47.1 Plus
serp-PB 541 CG32209-PB 67..537 111..575 1167 47.1 Plus
verm-PH 531 CG8756-PH 43..526 104..575 1154 46 Plus