Clone Sequence Records
BS11315.3prime Sequence
896 bp (798 high quality bases) assembled on 2006-04-18
> BS11315.3prime
ATGGTCTAGAAAGCTTCTACGCCAAAACAGGTGGTTCCTCTGATTCGATT
GATTCTTGTTTGATTTGCGGCTGTCCCAGCGACATAGGTAAACGATCACC
CCACCGACTCACTTTTGCACAAGAATAGGCAGACTTTCCGTGCTTGGACT
TCGTGAAGATAACCTCTTGGAGAGTGCCCTTTTCTGTGCAGAGCCGACAG
ATGGCATGCTTTGACCTTACCAAGGTGGGACGCACAATGCGCGGCCAGGA
GCTTGAGCTATCGGATTGGGAACCCTTCTTCAGGATGGCATAACTGTAGA
GGGAGGTGTGACGGTCTGCCAAGAAGTCGCTACCCAAACGCAGGGGAGCG
TAGGAGATGGGAAAATTGCAGGGCGTTCGATCGGCCAGATCCCGAAGTCG
AGGACAGACCAAATCATGCGGACATGGTGCCACAGTGTGACCTTCTTGTT
CCTGTTCCAACAAAAATTGCCTAGCCTCGTTGACTAACTCGCTGCCACGG
CGCGTTCCCTCCTCCACAATGACCAGGTAACCATCGCACTTCCGCCACAG
ATTCCGCAGCACATCCTCCCGCTGCTCTTTGTTCTCCAACTCAAAAAGCG
TATGAGATATAATGACCAGATCATAATTGGTTTCGATGGCGGGCAGGAAC
TGTCGATAAAATACATTGCGCAGGGCTATTTGCTTGTTCTCATGGCCATC
GCGCAGAATGAGCTCTGATATCTCATTCATCTCCCTGGACCTGTCCACGT
TGTAGTACTCGAATATGTGTTCGCGCCACAGTTCGCTGGCCACCCACATA
CCGGTTCCAATGCCGGATCCGAAGTCAAAGAAGCTTCGTGGCCGAAACTG
TTCATCCCGCTGCGCCAGCTCCGTGAGAACGCGCTTCAACACGGCG
BS11315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-PA | 1392 | CG13126-RA | 513..1392 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-RB | 1989 | CG13126-RB | 601..1480 | 896..17 | 4400 | 100 | Minus |
CG13126-RA | 1633 | CG13126-RA | 601..1480 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9953110..9953581 | 425..896 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 9952756..9953047 | 133..424 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 9952581..9952698 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:22:12 has no hits.
BS11315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:15 Download gff for
BS11315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-PA | 513..1392 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:23 Download gff for
BS11315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-PA | 513..1392 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:27:21 Download gff for
BS11315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 601..1483 | 12..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:55 Download gff for
BS11315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 601..1483 | 12..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:55 Download gff for
BS11315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9952578..9952698 | 12..134 | 97 | <- | Plus |
2L | 9952758..9953047 | 135..424 | 100 | <- | Plus |
2L | 9953110..9953581 | 425..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:27:21 Download gff for
BS11315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9952578..9952698 | 12..134 | 97 | <- | Plus |
arm_2L | 9952758..9953047 | 135..424 | 100 | <- | Plus |
arm_2L | 9953110..9953581 | 425..896 | 100 | | Plus |
BS11315.5prime Sequence
893 bp (843 high quality bases) assembled on 2006-04-18
> BS11315.5prime
GAAGTTATCAGTCGACATGAATTTTTCACTGAATTTCACAACGAGAAATC
TAGTGCCACGACTGCACCGATTCACCAGCAAGATTGCAGTGGACGTTGAA
CCAGCTGTGGTCTCTGCCCTGGAACATGCCACACTGAAGCCCAGAAAACA
TCCCGGAGTAGTGAGACCCAATCATGTGGAACTGCCGAAACAATTGAATG
ATACGCTAAAGCGCATCGTGGGGGATCATCCCGTCAAAAAACTAATCCAC
GATGGCCAGCAGCTCAACGCCTATATCAAATCCCGCCATCCACCACCCAC
GCTGGAAGAGATTGAGAACAAGAAACGCATCGTTATCGAAGAGGTCAACA
CGAAGATGCCTCTGGATCGCCTAGCTACACTCGACGAAGACGAGGCGGAG
CGTTGGAGGCGCAAGCGGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCG
TATCTACGCCTGGAAGCGAATAGAATATGGAGCATACGAGTCGCTTGTGT
ACGCCATAGCTCGTGGTGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTC
ACGGAGCTGGCGCAGCGGGATGAACAGTTTCGGCCACGAAGCTTCTTTGA
CTTCGGATCCGGCATTGGAACCGGTATGTGGGTGGCCAGCGAACTGTGGC
GCGAACACATATTCGAGTACTACAACGTGGACAGGTCCAGGGAGATGAAT
GAGATATCAGAGCTCATTCTGCGCGATGGCCATGAGAACAAGCAAATAGC
CCTGCGCAATGTATTTTATCGACAGTTCCTGCCCGCCATCGAAACCAATT
ATGATCTGGTCATTATATCTCATACGCTTTTTGAGTTGGAGAACAAAGAG
CAGCGGGAGGATGTGCTGCGGAATCTGTGGCGGAAGTGCGATG
BS11315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-PA | 1392 | CG13126-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-RB | 1989 | CG13126-RB | 89..965 | 17..893 | 4385 | 100 | Plus |
CG13126-RA | 1633 | CG13126-RA | 89..965 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9953217..9954093 | 893..17 | 4385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:49:50 has no hits.
BS11315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:16 Download gff for
BS11315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:24 Download gff for
BS11315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:36:47 Download gff for
BS11315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 89..965 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:44 Download gff for
BS11315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 89..965 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:44 Download gff for
BS11315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9953217..9954093 | 16..893 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:36:47 Download gff for
BS11315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9953217..9954093 | 16..893 | 99 | -> | Minus |
BS11315.complete Sequence
1424 bp assembled on 2006-11-01
GenBank Submission: FJ636817
> BS11315.complete
GAAGTTATCAGTCGACATGAATTTTTCACTGAATTTCACAACGAGAAATC
TAGTGCCACGACTGCACCGATTCACCAGCAAGATTGCAGTGGACGTTGAA
CCAGCTGTGGTCTCTGCCCTGGAACATGCCACACTGAAGCCCAGAAAACA
TCCCGGAGTAGTGAGACCCAATCATGTGGAACTGCCGAAACAATTGAATG
ATACGCTAAAGCGCATCGTGGGGGATCATCCCGTCAAAAAACTAATCCAC
GATGGCCAGCAGCTCAACGCCTATATCAAATCCCGCCATCCACCACCCAC
GCTGGAAGAGATTGAGAACAAGAAACGCATCGTTATCGAAGAGGTCAACA
CGAAGATGCCTCTGGATCGCCTAGCTACACTCGACGAAGACGAGGCGGAG
CGTTGGAGGCGCAAGCGGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCG
TATCTACGCCTGGAAGCGAATAGAATATGGAGCATACGAGTCGCTTGTGT
ACGCCATAGCTCGTGGTGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTC
ACGGAGCTGGCGCAGCGGGATGAACAGTTTCGGCCACGAAGCTTCTTTGA
CTTCGGATCCGGCATTGGAACCGGTATGTGGGTGGCCAGCGAACTGTGGC
GCGAACACATATTCGAGTACTACAACGTGGACAGGTCCAGGGAGATGAAT
GAGATATCAGAGCTCATTCTGCGCGATGGCCATGAGAACAAGCAAATAGC
CCTGCGCAATGTATTTTATCGACAGTTCCTGCCCGCCATCGAAACCAATT
ATGATCTGGTCATTATATCTCATACGCTTTTTGAGTTGGAGAACAAAGAG
CAGCGGGAGGATGTGCTGCGGAATCTGTGGCGGAAGTGCGATGGTTACCT
GGTCATTGTGGAGGAGGGAACGCGCCGTGGCAGCGAGTTAGTCAACGAGG
CTAGGCAATTTTTGTTGGAACAGGAACAAGAAGGTCACACTGTGGCACCA
TGTCCGCATGATTTGGTCTGTCCTCGACTTCGGGATCTGGCCGATCGAAC
GCCCTGCAATTTTCCCATCTCCTACGCTCCCCTGCGTTTGGGTAGCGACT
TCTTGGCAGACCGTCACACCTCCCTCTACAGTTATGCCATCCTGAAGAAG
GGTTCCCAATCCGATAGCTCAAGCTCCTGGCCGCGCATTGTGCGTCCCAC
CTTGGTAAGGTCAAAGCATGCCATCTGTCGGCTCTGCACAGAAAAGGGCA
CTCTCCAAGAGGTTATCTTCACGAAGTCCAAGCACGGAAAGTCTGCCTAT
TCTTGTGCAAAAGTGAGTCGGTGGGGTGATCGTTTACCTATGTCGCTGGG
ACAGCCGCAAATCAAACAAGAATCAATCGAATCAGAGGAACCACCTGTTT
TGGCGTAGAAGCTTTCTAGACCAT
BS11315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-RB | 1392 | CG13126-PB | 1..1392 | 17..1408 | 6960 | 100 | Plus |
CG13126-RA | 1392 | CG13126-PA | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-RB | 1989 | CG13126-RB | 89..1480 | 17..1408 | 6960 | 100 | Plus |
CG13126-RA | 1633 | CG13126-RA | 89..1480 | 17..1408 | 6960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9953110..9954093 | 1000..17 | 4920 | 100 | Minus |
2L | 23513712 | 2L | 9952756..9953047 | 1292..1001 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 9952581..9952698 | 1408..1291 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:54:20 has no hits.
BS11315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:48 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 1..1392 | 17..1408 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:04 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 51..1445 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:28 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 89..1480 | 17..1408 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:48 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 51..1445 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:29 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13126-RA | 89..1480 | 17..1408 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:29 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9952581..9952698 | 1291..1408 | 100 | <- | Minus |
2L | 9952758..9953047 | 1001..1290 | 100 | <- | Minus |
2L | 9953110..9954093 | 17..1000 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:28 Download gff for
BS11315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9952581..9952698 | 1291..1408 | 100 | <- | Minus |
arm_2L | 9952758..9953047 | 1001..1290 | 100 | <- | Minus |
arm_2L | 9953110..9954093 | 17..1000 | 100 | | Minus |
BS11315.pep Sequence
Translation from 16 to 1407
> BS11315.pep
MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR
PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE
NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK
RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI
GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF
YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE
GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP
ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK
HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK
QESIESEEPPVLA*
BS11315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13126-PB | 463 | CG13126-PB | 1..463 | 1..463 | 2423 | 100 | Plus |
CG13126-PA | 463 | CG13126-PA | 1..463 | 1..463 | 2423 | 100 | Plus |