Clone BS11315 Report

Search the DGRC for BS11315

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG13126-RA
Protein status:BS11315.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11315.3prime Sequence

896 bp (798 high quality bases) assembled on 2006-04-18

> BS11315.3prime
ATGGTCTAGAAAGCTTCTACGCCAAAACAGGTGGTTCCTCTGATTCGATT
GATTCTTGTTTGATTTGCGGCTGTCCCAGCGACATAGGTAAACGATCACC
CCACCGACTCACTTTTGCACAAGAATAGGCAGACTTTCCGTGCTTGGACT
TCGTGAAGATAACCTCTTGGAGAGTGCCCTTTTCTGTGCAGAGCCGACAG
ATGGCATGCTTTGACCTTACCAAGGTGGGACGCACAATGCGCGGCCAGGA
GCTTGAGCTATCGGATTGGGAACCCTTCTTCAGGATGGCATAACTGTAGA
GGGAGGTGTGACGGTCTGCCAAGAAGTCGCTACCCAAACGCAGGGGAGCG
TAGGAGATGGGAAAATTGCAGGGCGTTCGATCGGCCAGATCCCGAAGTCG
AGGACAGACCAAATCATGCGGACATGGTGCCACAGTGTGACCTTCTTGTT
CCTGTTCCAACAAAAATTGCCTAGCCTCGTTGACTAACTCGCTGCCACGG
CGCGTTCCCTCCTCCACAATGACCAGGTAACCATCGCACTTCCGCCACAG
ATTCCGCAGCACATCCTCCCGCTGCTCTTTGTTCTCCAACTCAAAAAGCG
TATGAGATATAATGACCAGATCATAATTGGTTTCGATGGCGGGCAGGAAC
TGTCGATAAAATACATTGCGCAGGGCTATTTGCTTGTTCTCATGGCCATC
GCGCAGAATGAGCTCTGATATCTCATTCATCTCCCTGGACCTGTCCACGT
TGTAGTACTCGAATATGTGTTCGCGCCACAGTTCGCTGGCCACCCACATA
CCGGTTCCAATGCCGGATCCGAAGTCAAAGAAGCTTCGTGGCCGAAACTG
TTCATCCCGCTGCGCCAGCTCCGTGAGAACGCGCTTCAACACGGCG

BS11315.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PA 1392 CG13126-RA 513..1392 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 601..1480 896..17 4400 100 Minus
CG13126-RA 1633 CG13126-RA 601..1480 896..17 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953110..9953581 425..896 2360 100 Plus
2L 23513712 2L 9952756..9953047 133..424 1460 100 Plus
2L 23513712 2L 9952581..9952698 17..134 590 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:22:12 has no hits.

BS11315.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:15 Download gff for BS11315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 513..1392 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:23 Download gff for BS11315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 513..1392 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:27:21 Download gff for BS11315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 601..1483 12..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:55 Download gff for BS11315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 601..1483 12..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:55 Download gff for BS11315.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9952578..9952698 12..134 97 <- Plus
2L 9952758..9953047 135..424 100 <- Plus
2L 9953110..9953581 425..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:27:21 Download gff for BS11315.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9952578..9952698 12..134 97 <- Plus
arm_2L 9952758..9953047 135..424 100 <- Plus
arm_2L 9953110..9953581 425..896 100   Plus

BS11315.5prime Sequence

893 bp (843 high quality bases) assembled on 2006-04-18

> BS11315.5prime
GAAGTTATCAGTCGACATGAATTTTTCACTGAATTTCACAACGAGAAATC
TAGTGCCACGACTGCACCGATTCACCAGCAAGATTGCAGTGGACGTTGAA
CCAGCTGTGGTCTCTGCCCTGGAACATGCCACACTGAAGCCCAGAAAACA
TCCCGGAGTAGTGAGACCCAATCATGTGGAACTGCCGAAACAATTGAATG
ATACGCTAAAGCGCATCGTGGGGGATCATCCCGTCAAAAAACTAATCCAC
GATGGCCAGCAGCTCAACGCCTATATCAAATCCCGCCATCCACCACCCAC
GCTGGAAGAGATTGAGAACAAGAAACGCATCGTTATCGAAGAGGTCAACA
CGAAGATGCCTCTGGATCGCCTAGCTACACTCGACGAAGACGAGGCGGAG
CGTTGGAGGCGCAAGCGGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCG
TATCTACGCCTGGAAGCGAATAGAATATGGAGCATACGAGTCGCTTGTGT
ACGCCATAGCTCGTGGTGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTC
ACGGAGCTGGCGCAGCGGGATGAACAGTTTCGGCCACGAAGCTTCTTTGA
CTTCGGATCCGGCATTGGAACCGGTATGTGGGTGGCCAGCGAACTGTGGC
GCGAACACATATTCGAGTACTACAACGTGGACAGGTCCAGGGAGATGAAT
GAGATATCAGAGCTCATTCTGCGCGATGGCCATGAGAACAAGCAAATAGC
CCTGCGCAATGTATTTTATCGACAGTTCCTGCCCGCCATCGAAACCAATT
ATGATCTGGTCATTATATCTCATACGCTTTTTGAGTTGGAGAACAAAGAG
CAGCGGGAGGATGTGCTGCGGAATCTGTGGCGGAAGTGCGATG

BS11315.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PA 1392 CG13126-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 89..965 17..893 4385 100 Plus
CG13126-RA 1633 CG13126-RA 89..965 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953217..9954093 893..17 4385 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:49:50 has no hits.

BS11315.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:16 Download gff for BS11315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:24 Download gff for BS11315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:36:47 Download gff for BS11315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..965 17..893 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:44 Download gff for BS11315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..965 17..893 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:44 Download gff for BS11315.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9953217..9954093 16..893 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:36:47 Download gff for BS11315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9953217..9954093 16..893 99 -> Minus

BS11315.complete Sequence

1424 bp assembled on 2006-11-01

GenBank Submission: FJ636817

> BS11315.complete
GAAGTTATCAGTCGACATGAATTTTTCACTGAATTTCACAACGAGAAATC
TAGTGCCACGACTGCACCGATTCACCAGCAAGATTGCAGTGGACGTTGAA
CCAGCTGTGGTCTCTGCCCTGGAACATGCCACACTGAAGCCCAGAAAACA
TCCCGGAGTAGTGAGACCCAATCATGTGGAACTGCCGAAACAATTGAATG
ATACGCTAAAGCGCATCGTGGGGGATCATCCCGTCAAAAAACTAATCCAC
GATGGCCAGCAGCTCAACGCCTATATCAAATCCCGCCATCCACCACCCAC
GCTGGAAGAGATTGAGAACAAGAAACGCATCGTTATCGAAGAGGTCAACA
CGAAGATGCCTCTGGATCGCCTAGCTACACTCGACGAAGACGAGGCGGAG
CGTTGGAGGCGCAAGCGGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCG
TATCTACGCCTGGAAGCGAATAGAATATGGAGCATACGAGTCGCTTGTGT
ACGCCATAGCTCGTGGTGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTC
ACGGAGCTGGCGCAGCGGGATGAACAGTTTCGGCCACGAAGCTTCTTTGA
CTTCGGATCCGGCATTGGAACCGGTATGTGGGTGGCCAGCGAACTGTGGC
GCGAACACATATTCGAGTACTACAACGTGGACAGGTCCAGGGAGATGAAT
GAGATATCAGAGCTCATTCTGCGCGATGGCCATGAGAACAAGCAAATAGC
CCTGCGCAATGTATTTTATCGACAGTTCCTGCCCGCCATCGAAACCAATT
ATGATCTGGTCATTATATCTCATACGCTTTTTGAGTTGGAGAACAAAGAG
CAGCGGGAGGATGTGCTGCGGAATCTGTGGCGGAAGTGCGATGGTTACCT
GGTCATTGTGGAGGAGGGAACGCGCCGTGGCAGCGAGTTAGTCAACGAGG
CTAGGCAATTTTTGTTGGAACAGGAACAAGAAGGTCACACTGTGGCACCA
TGTCCGCATGATTTGGTCTGTCCTCGACTTCGGGATCTGGCCGATCGAAC
GCCCTGCAATTTTCCCATCTCCTACGCTCCCCTGCGTTTGGGTAGCGACT
TCTTGGCAGACCGTCACACCTCCCTCTACAGTTATGCCATCCTGAAGAAG
GGTTCCCAATCCGATAGCTCAAGCTCCTGGCCGCGCATTGTGCGTCCCAC
CTTGGTAAGGTCAAAGCATGCCATCTGTCGGCTCTGCACAGAAAAGGGCA
CTCTCCAAGAGGTTATCTTCACGAAGTCCAAGCACGGAAAGTCTGCCTAT
TCTTGTGCAAAAGTGAGTCGGTGGGGTGATCGTTTACCTATGTCGCTGGG
ACAGCCGCAAATCAAACAAGAATCAATCGAATCAGAGGAACCACCTGTTT
TGGCGTAGAAGCTTTCTAGACCAT

BS11315.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1392 CG13126-PB 1..1392 17..1408 6960 100 Plus
CG13126-RA 1392 CG13126-PA 1..1392 17..1408 6960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 89..1480 17..1408 6960 100 Plus
CG13126-RA 1633 CG13126-RA 89..1480 17..1408 6960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953110..9954093 1000..17 4920 100 Minus
2L 23513712 2L 9952756..9953047 1292..1001 1460 100 Minus
2L 23513712 2L 9952581..9952698 1408..1291 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:54:20 has no hits.

BS11315.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:48 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 17..1408 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:04 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 51..1445 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:28 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..1480 17..1408 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:48 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 51..1445 17..1413 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:29 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..1480 17..1408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:29 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9952581..9952698 1291..1408 100 <- Minus
2L 9952758..9953047 1001..1290 100 <- Minus
2L 9953110..9954093 17..1000 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:28 Download gff for BS11315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9952581..9952698 1291..1408 100 <- Minus
arm_2L 9952758..9953047 1001..1290 100 <- Minus
arm_2L 9953110..9954093 17..1000 100   Minus

BS11315.pep Sequence

Translation from 16 to 1407

> BS11315.pep
MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR
PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE
NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK
RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI
GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF
YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE
GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP
ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK
HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK
QESIESEEPPVLA*

BS11315.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PB 463 CG13126-PB 1..463 1..463 2423 100 Plus
CG13126-PA 463 CG13126-PA 1..463 1..463 2423 100 Plus