Clone BS11316 Report

Search the DGRC for BS11316

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG12171-RA
Protein status:BS11316.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11316.3prime Sequence

804 bp (803 high quality bases) assembled on 2006-04-18

> BS11316.3prime
ATGGTCTAGAAAGCTTTTATCTGGGGCACATGGCATGGCGACCGCCGTCC
ACGGGCAGGCTGATACCGGTGCTGAAGCTGGCCTCGTCGCTGGCCAGGAA
TGCAATGGCCGCAGCCACCTCCTTGACTTCGCCGGGTCGACCCAGGGCAT
GGGTGACCTTGGCGTGCTCGAGGAACTTGACGTAGGCTTCCTGGTCCAGT
CCACCACGACGCTGCAGCTCGGTGATGATTACGCCGGGATTCACGGAGTT
CACACGCACACCCTTGGGAGCTAGCTCCAGAGCCACGCACCTGGTGAACT
GATCCACGGCAGCCTTGGAAACATTGTATGCTAAGACTCCGGGAAAGGAA
CGGATGCCGTTCACACTAGACACGTTTACAATGTTGCCCTTGGTCTTGAT
TAGCTCCGGTGTGACCAGGTGGGTCAGCTGGTAGAGCGACCGGACGTTGG
TGTTCATAACGCGGTCAAACTGCTCCAGACTGGTGTTCTCGATGCTGCCT
AGCTCCAAGATTCCGGCGTTGTTCACCAGCACGTCGATGCGACCGTGCTT
GGCCAATGTGGCGGAGACGATGCCCTGGACGTCGGACTCGCTGTTTATGT
CCGCCGCCACCTGGAGTGCTGGCGCTCCTCCAGCTGCCACTATCTGCTCC
GCGGTCTCGTTGAGCTTATCCAAATTCCTGCCCACGATGGTGAGCAGGCC
TCCCAGTTTAGCCAAGAGCACCGAAGTACCCGCTCCAATTCCCGAACTGG
CTCCGGTCACGATTATAACTTTATCCTTGAAACTGGGCATGTCGACTGAT
AACT

BS11316.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 774 CG12171-RA 1..774 790..17 3870 100 Minus
CG31548-PA 771 CG31548-RA 661..764 127..24 370 94.2 Minus
CG31549-PA 774 CG31549-RA 658..767 133..24 200 87.2 Minus
CG31548-PA 771 CG31548-RA 509..557 279..231 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1014 CG12171-RA 64..839 792..17 3880 100 Minus
CG31548-RA 952 CG31548-RA 303..811 532..24 985 79.8 Minus
CG31549-RB 991 CG31549-RB 75..832 781..24 970 75.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633690..5634465 792..17 3880 100 Minus
3R 32079331 3R 5636042..5636550 24..532 985 79.6 Plus
3R 32079331 3R 5632405..5633162 781..24 970 75.2 Minus
Blast to na_te.dros performed on 2015-02-12 12:34:49 has no hits.

BS11316.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:17 Download gff for BS11316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 17..790 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:26 Download gff for BS11316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 17..790 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:15:20 Download gff for BS11316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..839 17..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:25:02 Download gff for BS11316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..839 17..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:25:02 Download gff for BS11316.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5633676..5634465 17..804 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:15:20 Download gff for BS11316.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459398..1460187 17..804 99   Minus

BS11316.5prime Sequence

804 bp (779 high quality bases) assembled on 2006-04-18

> BS11316.5prime
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGATAAAAGCTTTCTA
GACC

BS11316.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 774 CG12171-RA 1..774 17..790 3870 100 Plus
CG31548-PA 771 CG31548-RA 661..764 680..783 370 94.2 Plus
CG31549-PA 774 CG31549-RA 658..767 674..783 200 87.2 Plus
CG31548-PA 771 CG31548-RA 509..557 528..576 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1014 CG12171-RA 64..839 15..790 3880 100 Plus
CG31548-RA 952 CG31548-RA 303..811 275..783 985 79.8 Plus
CG31549-RB 991 CG31549-RB 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633690..5634465 15..790 3880 100 Plus
3R 32079331 3R 5636042..5636550 783..275 985 79.6 Minus
3R 32079331 3R 5632405..5633162 26..783 970 75.2 Plus
Blast to na_te.dros performed on 2015-02-10 07:15:49 has no hits.

BS11316.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:18 Download gff for BS11316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:27 Download gff for BS11316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:17 Download gff for BS11316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..839 3..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:17 Download gff for BS11316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..839 3..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:17 Download gff for BS11316.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5633676..5634465 3..790 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:17 Download gff for BS11316.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459398..1460187 3..790 99   Plus

BS11316.complete Sequence

806 bp assembled on 2006-11-01

GenBank Submission: FJ636818

> BS11316.complete
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGATAAAAGCTTTCTA
GACCAT

BS11316.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 774 CG12171-PA 1..774 17..790 3870 100 Plus
CG31548-RA 771 CG31548-PA 256..764 275..783 985 79.6 Plus
CG31549-RB 774 CG31549-PB 10..767 26..783 970 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1014 CG12171-RA 64..839 15..790 3880 100 Plus
CG31548-RA 952 CG31548-RA 303..811 275..783 985 79.6 Plus
CG31549-RB 991 CG31549-RB 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633690..5634465 15..790 3880 100 Plus
3R 32079331 3R 5636042..5636550 783..275 985 79.6 Minus
3R 32079331 3R 5632405..5633162 26..783 970 75.2 Plus
Blast to na_te.dros performed on 2014-11-27 00:54:50 has no hits.

BS11316.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:42 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:57 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 53..842 3..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:20 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 66..837 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:42 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 53..842 3..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:23 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 66..837 17..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:23 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5633692..5634463 17..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:20 Download gff for BS11316.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459414..1460185 17..788 100   Plus

BS11316.pep Sequence

Translation from 16 to 789

> BS11316.pep
MPSFKDKVIIVTGASSGIGAGTSVLLAKLGGLLTIVGRNLDKLNETAEQI
VAAGGAPALQVAADINSESDVQGIVSATLAKHGRIDVLVNNAGILELGSI
ENTSLEQFDRVMNTNVRSLYQLTHLVTPELIKTKGNIVNVSSVNGIRSFP
GVLAYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIITELQRRGGLDQ
EAYVKFLEHAKVTHALGRPGEVKEVAAAIAFLASDEASFSTGISLPVDGG
RHAMCPR*

BS11316.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 257 CG12171-PA 1..257 1..257 1269 100 Plus
CG31549-PB 257 CG31549-PB 1..257 1..257 1058 80.9 Plus
CG31549-PA 257 CG31549-PA 1..257 1..257 1058 80.9 Plus
CG31548-PA 256 CG31548-PA 2..256 3..257 901 68.6 Plus
CG31546-PA 264 CG31546-PA 11..264 4..257 672 52.9 Plus