Clone Sequence Records
BS11316.3prime Sequence
804 bp (803 high quality bases) assembled on 2006-04-18
> BS11316.3prime
ATGGTCTAGAAAGCTTTTATCTGGGGCACATGGCATGGCGACCGCCGTCC
ACGGGCAGGCTGATACCGGTGCTGAAGCTGGCCTCGTCGCTGGCCAGGAA
TGCAATGGCCGCAGCCACCTCCTTGACTTCGCCGGGTCGACCCAGGGCAT
GGGTGACCTTGGCGTGCTCGAGGAACTTGACGTAGGCTTCCTGGTCCAGT
CCACCACGACGCTGCAGCTCGGTGATGATTACGCCGGGATTCACGGAGTT
CACACGCACACCCTTGGGAGCTAGCTCCAGAGCCACGCACCTGGTGAACT
GATCCACGGCAGCCTTGGAAACATTGTATGCTAAGACTCCGGGAAAGGAA
CGGATGCCGTTCACACTAGACACGTTTACAATGTTGCCCTTGGTCTTGAT
TAGCTCCGGTGTGACCAGGTGGGTCAGCTGGTAGAGCGACCGGACGTTGG
TGTTCATAACGCGGTCAAACTGCTCCAGACTGGTGTTCTCGATGCTGCCT
AGCTCCAAGATTCCGGCGTTGTTCACCAGCACGTCGATGCGACCGTGCTT
GGCCAATGTGGCGGAGACGATGCCCTGGACGTCGGACTCGCTGTTTATGT
CCGCCGCCACCTGGAGTGCTGGCGCTCCTCCAGCTGCCACTATCTGCTCC
GCGGTCTCGTTGAGCTTATCCAAATTCCTGCCCACGATGGTGAGCAGGCC
TCCCAGTTTAGCCAAGAGCACCGAAGTACCCGCTCCAATTCCCGAACTGG
CTCCGGTCACGATTATAACTTTATCCTTGAAACTGGGCATGTCGACTGAT
AACT
BS11316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-PA | 774 | CG12171-RA | 1..774 | 790..17 | 3870 | 100 | Minus |
CG31548-PA | 771 | CG31548-RA | 661..764 | 127..24 | 370 | 94.2 | Minus |
CG31549-PA | 774 | CG31549-RA | 658..767 | 133..24 | 200 | 87.2 | Minus |
CG31548-PA | 771 | CG31548-RA | 509..557 | 279..231 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 1014 | CG12171-RA | 64..839 | 792..17 | 3880 | 100 | Minus |
CG31548-RA | 952 | CG31548-RA | 303..811 | 532..24 | 985 | 79.8 | Minus |
CG31549-RB | 991 | CG31549-RB | 75..832 | 781..24 | 970 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5633690..5634465 | 792..17 | 3880 | 100 | Minus |
3R | 32079331 | 3R | 5636042..5636550 | 24..532 | 985 | 79.6 | Plus |
3R | 32079331 | 3R | 5632405..5633162 | 781..24 | 970 | 75.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:34:49 has no hits.
BS11316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:17 Download gff for
BS11316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:26 Download gff for
BS11316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:15:20 Download gff for
BS11316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..839 | 17..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:25:02 Download gff for
BS11316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..839 | 17..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:25:02 Download gff for
BS11316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5633676..5634465 | 17..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:15:20 Download gff for
BS11316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1459398..1460187 | 17..804 | 99 | | Minus |
BS11316.5prime Sequence
804 bp (779 high quality bases) assembled on 2006-04-18
> BS11316.5prime
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGATAAAAGCTTTCTA
GACC
BS11316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-PA | 774 | CG12171-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG31548-PA | 771 | CG31548-RA | 661..764 | 680..783 | 370 | 94.2 | Plus |
CG31549-PA | 774 | CG31549-RA | 658..767 | 674..783 | 200 | 87.2 | Plus |
CG31548-PA | 771 | CG31548-RA | 509..557 | 528..576 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 1014 | CG12171-RA | 64..839 | 15..790 | 3880 | 100 | Plus |
CG31548-RA | 952 | CG31548-RA | 303..811 | 275..783 | 985 | 79.8 | Plus |
CG31549-RB | 991 | CG31549-RB | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5633690..5634465 | 15..790 | 3880 | 100 | Plus |
3R | 32079331 | 3R | 5636042..5636550 | 783..275 | 985 | 79.6 | Minus |
3R | 32079331 | 3R | 5632405..5633162 | 26..783 | 970 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:15:49 has no hits.
BS11316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:18 Download gff for
BS11316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:27 Download gff for
BS11316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:17 Download gff for
BS11316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..839 | 3..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:17 Download gff for
BS11316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..839 | 3..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:17 Download gff for
BS11316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5633676..5634465 | 3..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:17 Download gff for
BS11316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1459398..1460187 | 3..790 | 99 | | Plus |
BS11316.complete Sequence
806 bp assembled on 2006-11-01
GenBank Submission: FJ636818
> BS11316.complete
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGATAAAAGCTTTCTA
GACCAT
BS11316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 774 | CG12171-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG31548-RA | 771 | CG31548-PA | 256..764 | 275..783 | 985 | 79.6 | Plus |
CG31549-RB | 774 | CG31549-PB | 10..767 | 26..783 | 970 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 1014 | CG12171-RA | 64..839 | 15..790 | 3880 | 100 | Plus |
CG31548-RA | 952 | CG31548-RA | 303..811 | 275..783 | 985 | 79.6 | Plus |
CG31549-RB | 991 | CG31549-RB | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5633690..5634465 | 15..790 | 3880 | 100 | Plus |
3R | 32079331 | 3R | 5636042..5636550 | 783..275 | 985 | 79.6 | Minus |
3R | 32079331 | 3R | 5632405..5633162 | 26..783 | 970 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:50 has no hits.
BS11316.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:42 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:57 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 53..842 | 3..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:20 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 66..837 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:42 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 53..842 | 3..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:23 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 66..837 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:23 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5633692..5634463 | 17..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:20 Download gff for
BS11316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1459414..1460185 | 17..788 | 100 | | Plus |
BS11316.pep Sequence
Translation from 16 to 789
> BS11316.pep
MPSFKDKVIIVTGASSGIGAGTSVLLAKLGGLLTIVGRNLDKLNETAEQI
VAAGGAPALQVAADINSESDVQGIVSATLAKHGRIDVLVNNAGILELGSI
ENTSLEQFDRVMNTNVRSLYQLTHLVTPELIKTKGNIVNVSSVNGIRSFP
GVLAYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIITELQRRGGLDQ
EAYVKFLEHAKVTHALGRPGEVKEVAAAIAFLASDEASFSTGISLPVDGG
RHAMCPR*
BS11316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-PA | 257 | CG12171-PA | 1..257 | 1..257 | 1269 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 1..257 | 1..257 | 1058 | 80.9 | Plus |
CG31549-PA | 257 | CG31549-PA | 1..257 | 1..257 | 1058 | 80.9 | Plus |
CG31548-PA | 256 | CG31548-PA | 2..256 | 3..257 | 901 | 68.6 | Plus |
CG31546-PA | 264 | CG31546-PA | 11..264 | 4..257 | 672 | 52.9 | Plus |