Clone Sequence Records
BS11317.3prime Sequence
940 bp (777 high quality bases) assembled on 2006-04-18
> BS11317.3prime
ATGGTCTAGAAAGCTTCTATGGCCAGGCGAAGTTGATGCCCGTCAGCTGG
TAGAACTTGTTGTTGAAGGGCCGGTAGAACTCCCGGAGGCGCTCGATGGC
CCCGGGATCTATGTGCGGATGGTTGCGCCCCTTGGTCTTACCCAGACAGT
GGGGCGTGGAGCGTGCCTCCGACTTGAAGAGGCAGGGGAAGCCCTTGGTG
GCATTGAAGTAGAAGTGCTTCTCGGTGACCACGCGCTTCAGACCGAGGAA
GTCCTGTACGCGTCCAATCTCGTAGGCGGGATCCATGATCAGCCGCTCGC
CGCTGATGAAGAGCAGCTGCGAGAGCGGAAAGTAGAGCAGCCAGCGCTCC
AGATAGCGTGCATAGACGCCGATCTTCACCGGGCCCCAGTTGGTGTCCAC
CACCGAGTAGCTACCGTTGACGAAGGCCAGCTGCTCGAAGAGCTTCATGT
CCGCCTTCTTGCTCGCCGCCTGTGTGTAGTCGGAGATGGCCCGCGTCACC
GGATCCCGCACCACAATCAGTAATTTTGTTGCCGGATTCATGTGGTAGAC
GCGCTGCGGCACCTCCTTGGTGACGAAGTAGCTGGGCGTCTTCTCCATGG
TGATCTGGCCCTCGATAGTGTACGGCATGTGGTGGCGGTACCAGCGTAGT
CCCCGCTGGTAGTGCCTGTCGAAGAAGTGCACCTCCGAACCGGCGGCCCG
CACGTCCGGATGCAGGCGGATGAACTCGAGCAGCGCCCGCGTCCCGCTCT
TCTTCACGCCAATGATGAGCGTGTCGGGCAGGTGGCGCGATGGTCGGAGC
CCCTGCTGACGGAGCAGCTGATACTTGGGCGCCCCATCCAGGCTGCTAGT
AACCGTCTGTGCCGGCGGAGCACCGGTGGTGGATGAGCTGTTCCTGCTGC
TGCTGCTGTTGCTGCTGCTGCTGTTGGCGGCGTTTTTGGT
BS11317.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7890-PA | 1155 | CG7890-RA | 232..1155 | 940..17 | 4595 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 2265 | CG7890-RB | 734..1657 | 940..17 | 4605 | 99.9 | Minus |
Hs3st-B-RA | 2092 | CG7890-RA | 385..1308 | 940..17 | 4605 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19250754..19251261 | 524..17 | 2540 | 100 | Minus |
X | 23542271 | X | 19249787..19250202 | 940..525 | 2065 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:48:11 has no hits.
BS11317.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:19 Download gff for
BS11317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 232..1155 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:29 Download gff for
BS11317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 232..1155 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:56:35 Download gff for
BS11317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 385..1308 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:53 Download gff for
BS11317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 385..1308 | 17..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:53 Download gff for
BS11317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19249787..19250202 | 525..940 | 99 | -> | Minus |
X | 19250754..19251261 | 17..524 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:56:35 Download gff for
BS11317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19143820..19144235 | 525..940 | 99 | -> | Minus |
arm_X | 19144787..19145294 | 17..524 | 100 | | Minus |
BS11317.5prime Sequence
906 bp (791 high quality bases) assembled on 2006-04-18
> BS11317.5prime
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCCACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGA
BS11317.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7890-PA | 1155 | CG7890-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 2265 | CG7890-RB | 503..1392 | 17..906 | 4435 | 99.9 | Plus |
Hs3st-B-RA | 2092 | CG7890-RA | 154..1043 | 17..906 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19249735..19250202 | 196..663 | 2340 | 100 | Plus |
X | 23542271 | X | 19250754..19250996 | 664..906 | 1200 | 99.6 | Plus |
X | 23542271 | X | 19249141..19249323 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:12:07 has no hits.
BS11317.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:20 Download gff for
BS11317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:30 Download gff for
BS11317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:29:45 Download gff for
BS11317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1042 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:47:41 Download gff for
BS11317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1042 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:47:41 Download gff for
BS11317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19249141..19249323 | 17..199 | 100 | -> | Plus |
X | 19249739..19250202 | 200..663 | 100 | -> | Plus |
X | 19250754..19250995 | 664..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:29:45 Download gff for
BS11317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19143174..19143356 | 17..199 | 100 | -> | Plus |
arm_X | 19143772..19144235 | 200..663 | 100 | -> | Plus |
arm_X | 19144787..19145028 | 664..905 | 99 | | Plus |
BS11317.complete Sequence
1187 bp assembled on 2006-11-01
GenBank Submission: FJ636819
> BS11317.complete
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGATCCCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGA
AGCGCGTGGTCACCGAGAAGCACTTCTACTTCAATGCCACCAAGGGCTTC
CCCTGCCTCTTCAAGTCGGAGGCACGCTCCACGCCCCACTGTCTGGGTAA
GACCAAGGGGCGCAACCATCCGCACATAGATCCCGGGGCCATCGAGCGCC
TCCGGGAGTTCTACCGGCCCTTCAACAACAAGTTCTACCAGCTGACGGGC
ATCAACTTCGCCTGGCCATAGAAGCTTTCTAGACCAT
BS11317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 1155 | CG7890-PB | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Hs3st-B-RA | 1155 | CG7890-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 2265 | CG7890-RB | 503..1657 | 17..1171 | 5775 | 100 | Plus |
Hs3st-B-RA | 2092 | CG7890-RA | 154..1308 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19250754..19251261 | 664..1171 | 2540 | 100 | Plus |
X | 23542271 | X | 19249735..19250202 | 196..663 | 2340 | 100 | Plus |
X | 23542271 | X | 19249141..19249323 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:42:01 has no hits.
BS11317.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:49 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 1..1155 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:05 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 67..1221 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:56 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1308 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:49 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 67..1221 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:41 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1308 | 17..1171 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:41 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19249141..19249323 | 17..199 | 100 | -> | Plus |
X | 19249739..19250202 | 200..663 | 100 | -> | Plus |
X | 19250754..19251261 | 664..1171 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:56 Download gff for
BS11317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19143174..19143356 | 17..199 | 100 | -> | Plus |
arm_X | 19143772..19144235 | 200..663 | 100 | -> | Plus |
arm_X | 19144787..19145294 | 664..1171 | 100 | | Plus |
BS11317.pep Sequence
Translation from 16 to 1170
> BS11317.pep
MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC
LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG
APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF
IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV
TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF
VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY
EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN
HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWP*
BS11317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-PB | 384 | CG7890-PB | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 452..603 | 226..384 | 336 | 43.8 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 452..603 | 226..384 | 336 | 43.8 | Plus |
sfl-PB | 1048 | CG8339-PB | 758..1027 | 131..376 | 288 | 30.5 | Plus |