Clone BS11317 Report

Search the DGRC for BS11317

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptHs3st-B-RA
Protein status:BS11317.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11317.3prime Sequence

940 bp (777 high quality bases) assembled on 2006-04-18

> BS11317.3prime
ATGGTCTAGAAAGCTTCTATGGCCAGGCGAAGTTGATGCCCGTCAGCTGG
TAGAACTTGTTGTTGAAGGGCCGGTAGAACTCCCGGAGGCGCTCGATGGC
CCCGGGATCTATGTGCGGATGGTTGCGCCCCTTGGTCTTACCCAGACAGT
GGGGCGTGGAGCGTGCCTCCGACTTGAAGAGGCAGGGGAAGCCCTTGGTG
GCATTGAAGTAGAAGTGCTTCTCGGTGACCACGCGCTTCAGACCGAGGAA
GTCCTGTACGCGTCCAATCTCGTAGGCGGGATCCATGATCAGCCGCTCGC
CGCTGATGAAGAGCAGCTGCGAGAGCGGAAAGTAGAGCAGCCAGCGCTCC
AGATAGCGTGCATAGACGCCGATCTTCACCGGGCCCCAGTTGGTGTCCAC
CACCGAGTAGCTACCGTTGACGAAGGCCAGCTGCTCGAAGAGCTTCATGT
CCGCCTTCTTGCTCGCCGCCTGTGTGTAGTCGGAGATGGCCCGCGTCACC
GGATCCCGCACCACAATCAGTAATTTTGTTGCCGGATTCATGTGGTAGAC
GCGCTGCGGCACCTCCTTGGTGACGAAGTAGCTGGGCGTCTTCTCCATGG
TGATCTGGCCCTCGATAGTGTACGGCATGTGGTGGCGGTACCAGCGTAGT
CCCCGCTGGTAGTGCCTGTCGAAGAAGTGCACCTCCGAACCGGCGGCCCG
CACGTCCGGATGCAGGCGGATGAACTCGAGCAGCGCCCGCGTCCCGCTCT
TCTTCACGCCAATGATGAGCGTGTCGGGCAGGTGGCGCGATGGTCGGAGC
CCCTGCTGACGGAGCAGCTGATACTTGGGCGCCCCATCCAGGCTGCTAGT
AACCGTCTGTGCCGGCGGAGCACCGGTGGTGGATGAGCTGTTCCTGCTGC
TGCTGCTGTTGCTGCTGCTGCTGTTGGCGGCGTTTTTGGT

BS11317.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7890-PA 1155 CG7890-RA 232..1155 940..17 4595 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 2265 CG7890-RB 734..1657 940..17 4605 99.9 Minus
Hs3st-B-RA 2092 CG7890-RA 385..1308 940..17 4605 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19250754..19251261 524..17 2540 100 Minus
X 23542271 X 19249787..19250202 940..525 2065 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 16:48:11 has no hits.

BS11317.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:19 Download gff for BS11317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 232..1155 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:29 Download gff for BS11317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 232..1155 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:56:35 Download gff for BS11317.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 385..1308 17..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:53 Download gff for BS11317.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 385..1308 17..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:53 Download gff for BS11317.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19249787..19250202 525..940 99 -> Minus
X 19250754..19251261 17..524 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:56:35 Download gff for BS11317.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143820..19144235 525..940 99 -> Minus
arm_X 19144787..19145294 17..524 100   Minus

BS11317.5prime Sequence

906 bp (791 high quality bases) assembled on 2006-04-18

> BS11317.5prime
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCCACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGA

BS11317.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7890-PA 1155 CG7890-RA 1..890 17..906 4425 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 2265 CG7890-RB 503..1392 17..906 4435 99.9 Plus
Hs3st-B-RA 2092 CG7890-RA 154..1043 17..906 4435 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19249735..19250202 196..663 2340 100 Plus
X 23542271 X 19250754..19250996 664..906 1200 99.6 Plus
X 23542271 X 19249141..19249323 17..199 915 100 Plus
Blast to na_te.dros performed on 2015-02-10 07:12:07 has no hits.

BS11317.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:20 Download gff for BS11317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:30 Download gff for BS11317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:29:45 Download gff for BS11317.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1042 17..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:47:41 Download gff for BS11317.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1042 17..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:47:41 Download gff for BS11317.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19249141..19249323 17..199 100 -> Plus
X 19249739..19250202 200..663 100 -> Plus
X 19250754..19250995 664..905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:29:45 Download gff for BS11317.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143174..19143356 17..199 100 -> Plus
arm_X 19143772..19144235 200..663 100 -> Plus
arm_X 19144787..19145028 664..905 99   Plus

BS11317.complete Sequence

1187 bp assembled on 2006-11-01

GenBank Submission: FJ636819

> BS11317.complete
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGATCCCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGA
AGCGCGTGGTCACCGAGAAGCACTTCTACTTCAATGCCACCAAGGGCTTC
CCCTGCCTCTTCAAGTCGGAGGCACGCTCCACGCCCCACTGTCTGGGTAA
GACCAAGGGGCGCAACCATCCGCACATAGATCCCGGGGCCATCGAGCGCC
TCCGGGAGTTCTACCGGCCCTTCAACAACAAGTTCTACCAGCTGACGGGC
ATCAACTTCGCCTGGCCATAGAAGCTTTCTAGACCAT

BS11317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 1155 CG7890-PB 1..1155 17..1171 5775 100 Plus
Hs3st-B-RA 1155 CG7890-PA 1..1155 17..1171 5775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 2265 CG7890-RB 503..1657 17..1171 5775 100 Plus
Hs3st-B-RA 2092 CG7890-RA 154..1308 17..1171 5775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19250754..19251261 664..1171 2540 100 Plus
X 23542271 X 19249735..19250202 196..663 2340 100 Plus
X 23542271 X 19249141..19249323 17..199 915 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:42:01 has no hits.

BS11317.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:49 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..1155 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:05 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 67..1221 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:56 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1308 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:49 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 67..1221 17..1171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:41 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1308 17..1171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:41 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
X 19249141..19249323 17..199 100 -> Plus
X 19249739..19250202 200..663 100 -> Plus
X 19250754..19251261 664..1171 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:56 Download gff for BS11317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143174..19143356 17..199 100 -> Plus
arm_X 19143772..19144235 200..663 100 -> Plus
arm_X 19144787..19145294 664..1171 100   Plus

BS11317.pep Sequence

Translation from 16 to 1170

> BS11317.pep
MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC
LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG
APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF
IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV
TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF
VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY
EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN
HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWP*

BS11317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-PB 384 CG7890-PB 1..384 1..384 1998 100 Plus
Hs3st-B-PA 384 CG7890-PA 1..384 1..384 1998 100 Plus
Hs3st-A-PB 605 CG33147-PB 145..353 30..240 400 44 Plus
Hs3st-A-PA 605 CG33147-PA 145..353 30..240 400 44 Plus
Hs3st-A-PB 605 CG33147-PB 452..603 226..384 336 43.8 Plus
Hs3st-A-PA 605 CG33147-PA 452..603 226..384 336 43.8 Plus
sfl-PB 1048 CG8339-PB 758..1027 131..376 288 30.5 Plus