Clone BS11318 Report

Search the DGRC for BS11318

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptMFS3-RA
Protein status:BS11318.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11318.3prime Sequence

952 bp (786 high quality bases) assembled on 2006-04-18

> BS11318.3prime
ATGGTCTAGAAAGCTTTTAGGGCTTAGTTGGCAGCTCCTTCAACGGAGTC
TTTTCGTCCTTGGCCTCGGGATCCTTGGGAGTTCCGGCCTTGTTCCACGG
CTGCTCGCTGCCCGATCCCAAGAAGACGAATACCAGGAATTCCAAGGCGA
ACAGCACGATGGTCACTCCGAAAATGATGCGCCAGGCGCCAATGTTTTGA
TTTCCCTTGGTGACGAAGCCCACGAAGAGGGGGACAACAATACCAGGTAG
CGTAGCCGCCGTGTTGGTCAGAGCCACCAGGGTGCCGGCGAAGTTCGGTG
CGATGTCGATGTGGTTGGACAGGAAGCCGGAGAACATGGAGCCCATGGCC
ACAATGCCCACGGACATGACAGACACCGCCTCATAGTGACGGCATCCGAT
GTAGCAGAGGACCAGCAGACAAACTCCAGGGATCAGGGTGCAAATGGAGG
TGGCCGTCTTGCGGGCAACGGTGGTGGTGATCTTACCCTTGGCCTGCAGA
CTGTCGAGGAGCTTGCCCAGACAGATGCTGAAGATGATCATGGGGAAGTA
GGGCAGAGCACTGAGGGCTGCATTGCTGGCCACGTTGAACTTGAGCACCT
GCTTCATGTAGAAGGGAATCTCGATGAGGAACATATACCAGCCGAAGTTG
CTGCAGGTGTGGGCGATGAGAATGGCCCAGAAGGGCACGGAGGTGAAGAC
CTTGCCCCATGGAACCGCCGGGTGGTGCTCCGTCTTCTGTTCGGTGCCCA
GCGAGCTGGTGATCATTTGGCGCTCCTCCAGACTGATGAAACGCTGCTTG
TTGGGGTTGTCCTGGACCAGAATGACCCACAGCAACATCCAGATGCAGCT
AAGTGCGCCCATGACATAAAAGACCGACTCCCAGCCCCATTGGGCGGAGC
ACACGCCGGCCAGGAGGATGGAAAGAGCCGTACCCGCAGATGTGCCCACG
TA

BS11318.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4726-PA 1539 CG4726-RA 604..1539 952..17 4655 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 2029 CG4726-RA 774..1709 952..17 4665 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1146007..1146477 952..482 2340 99.8 Minus
2L 23513712 2L 1146538..1146825 487..200 1440 100 Minus
2L 23513712 2L 1146893..1147075 199..17 915 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:26:36 has no hits.

BS11318.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:21 Download gff for BS11318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 605..1539 17..951 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:32 Download gff for BS11318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 605..1539 17..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:40:13 Download gff for BS11318.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 775..1711 13..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:41 Download gff for BS11318.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 775..1711 13..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:41 Download gff for BS11318.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1146008..1146472 487..951 99 -> Minus
2L 1146539..1146825 200..486 100 -> Minus
2L 1146893..1147077 13..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:40:13 Download gff for BS11318.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1146008..1146472 487..951 99 -> Minus
arm_2L 1146539..1146825 200..486 100 -> Minus
arm_2L 1146893..1147077 13..199 98   Minus

BS11318.5prime Sequence

968 bp (793 high quality bases) assembled on 2006-04-18

> BS11318.5prime
GAAGTTATCAGTCGACATGACGGACGAAGTGCCCGCCAAAGGCAGCATAT
TGGGCAAACTCGTGCCCGCCCGCTATGTGCTGGCCCTCCTGGGGTCCATC
GGCATGGCCATTGTGTACGGCCTGAAGGTGAATCTCAGCGTGGCCATGGT
GGCCATGGTGAACCACACAGCCATTAAGGCCCACGGAGACGGCGGTGGAC
ATGGGGGACACGGCAGCGTCATCCTTTCGAACGCCTCCCAAGTGTCCCTG
GTGGAGGAATGCAACCCGCCGGGTGGTGCCTCCAATGTGACGGCTAAGGT
GGAGGACGGTCCCTTCGACTGGAGCGAGCCCCTGCAGGGAACCCTGCTGA
GCTGCTACTTCTGGGGCTATTTGGTCTCGCAGATTCCGCTGGCACACGTC
GCCGAGAACTTCTCCGCCAAGTGGGTGATGCTCTTCTCGGTGGCCATCAA
CGTCGTGTGCACGCTGCTAACGCCCGTCTTTACTGAATTGCATTACGGTG
GCCTGATTCTGATGCGAGTGCTTGAGGGCGTCGGCGGAGGAGCCTCCTTC
CCGGCCATGCACGTGATGATCGCCTCCTGGGCCCCTCCCACGGAGCGCAT
GGTCATGTCCACCATCATCTACGTGGGCACATCTGCGGGTACGGCTCTTT
CCATCCTCCTGGCCGGCGTGTGCTCCGCCCAATGGGGCTGGGAGTCGGTC
TTCTATGTCATGGGCGCACTTAGCTGCATCTGGATGTTGCTGTGGGTCAT
TCTGGTCCAGGACAACCCCAACAAGCAGCGTTTCATCAGTCTGGAGGAGC
GCCAAATGATCACCAGCTCGCTGGGCACCGAACAGAAGACGGAGCACCAC
CCGGGCGTTCCATGGGGCAAGGTCTTCACCTCCGTGCCCTTCTGGGNCAT
TCTCATCGCCCACACCTGCAGCAACTTCGGCTGGTATATGTCCCTCATCG
AGATCCCTTCTACATGAA

BS11318.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4726-PA 1539 CG4726-RA 1..938 17..954 4596 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 2029 CG4726-RA 171..1123 17..968 4684 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1145444..1146356 57..968 4459 99.5 Plus
2L 23513712 2L 1143371..1143410 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:04:16 has no hits.

BS11318.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:22 Download gff for BS11318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 1..951 17..966 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:34 Download gff for BS11318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 1..951 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:53 Download gff for BS11318.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1123 17..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:59 Download gff for BS11318.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1123 17..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:59 Download gff for BS11318.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1143371..1143410 17..56 100 -> Plus
2L 1145444..1146356 57..968 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:53 Download gff for BS11318.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1143371..1143410 17..56 100 -> Plus
arm_2L 1145444..1146356 57..968 99   Plus

BS11318.complete Sequence

1571 bp assembled on 2006-11-01

GenBank Submission: FJ636820

> BS11318.complete
GAAGTTATCAGTCGACATGACGGACGAAGTGCCCGCCAAAGGCAGCATAT
TGGGCAAACTCGTGCCCGCCCGCTATGTGCTGGCCCTCCTGGGGTCCATC
GGCATGGCCATTGTGTACGGCCTGAAGGTGAATCTCAGCGTGGCCATGGT
GGCCATGGTGAACCACACAGCCATTAAGGCCCACGGAGACGGCGGTGGAC
ATGGGGGACACGGCAGCGTCATCCTTTCGAACGCCTCCCAAGTGTCCCTG
GTGGAGGAATGCAACCCGCCGGGTGGTGCCTCCAATGTGACGGCTAAGGT
GGAGGACGGTCCCTTCGACTGGAGCGAGCCCCTGCAGGGAACCCTGCTGA
GCTGCTACTTCTGGGGCTATTTGGTCTCGCAGATTCCGCTGGCACACGTC
GCCGAGAACTTCTCCGCCAAGTGGGTGATGCTCTTCTCGGTGGCCATCAA
CGTCGTGTGCACGCTGCTAACGCCCGTCTTTACTGAATTGCATTACGGTG
GCCTGATTCTGATGCGAGTGCTTGAGGGCGTCGGCGGAGGAGCCTCCTTC
CCGGCCATGCACGTGATGATCGCCTCCTGGGCCCCTCCCACGGAGCGCAT
GGTCATGTCCACCATCATCTACGTGGGCACATCTGCGGGTACGGCTCTTT
CCATCCTCCTGGCCGGCGTGTGCTCCGCCCAATGGGGCTGGGAGTCGGTC
TTCTATGTCATGGGCGCACTTAGCTGCATCTGGATGTTGCTGTGGGTCAT
TCTGGTCCAGGACAACCCCAACAAGCAGCGTTTCATCAGTCTGGAGGAGC
GCCAAATGATCACCAGCTCGCTGGGCACCGAACAGAAGACGGAGCACCAC
CCGGCGGTTCCATGGGGCAAGGTCTTCACCTCCGTGCCCTTCTGGGCCAT
TCTCATCGCCCACACCTGCAGCAACTTCGGCTGGTATATGTTCCTCATCG
AGATTCCCTTCTACATGAAGCAGGTGCTCAAGTTCAACGTGGCCAGCAAT
GCAGCCCTCAGTGCTCTGCCCTACTTCCCCATGATCATCTTCAGCATCTG
TCTGGGCAAGCTCCTCGACAGTCTGCAGGCCAAGGGTAAGATCACCACCA
CCGTTGCCCGCAAGACGGCCACCTCCATTTGCACCCTGATCCCTGGAGTT
TGTCTGCTGGTCCTCTGCTACATCGGATGCCGTCACTATGAGGCGGTGTC
TGTCATGTCCGTGGGCATTGTGGCCATGGGCTCCATGTTCTCCGGCTTCC
TGTCCAACCACATCGACATCGCACCGAACTTCGCCGGCACCCTGGTGGCT
CTGACCAACACGGCGGCTACGCTACCTGGTATTGTTGTCCCCCTCTTCGT
GGGCTTCGTCACCAAGGGAAATCAAAACATTGGCGCCTGGCGCATCATTT
TCGGAGTGACCATCGTGCTGTTCGCCTTGGAATTCCTGGTATTCGTCTTC
TTGGGATCGGGCAGCGAGCAGCCGTGGAACAAGGCCGGAACTCCCAAGGA
TCCCGAGGCCAAGGACGAAAAGACTCCGTTGAAGGAGCTGCCAACTAAGC
CCTAAAAGCTTTCTAGACCAT

BS11318.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 1539 CG4726-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 2029 CG4726-RA 171..1709 17..1555 7695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1145444..1146477 57..1090 5170 100 Plus
2L 23513712 2L 1146538..1146825 1085..1372 1440 100 Plus
2L 23513712 2L 1146893..1147075 1373..1555 915 100 Plus
2L 23513712 2L 1143371..1143410 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:39:50 has no hits.

BS11318.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:51 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4726-RA 1..1539 17..1555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:07 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4726-RA 169..1709 17..1559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:46 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1707 17..1553 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:52 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4726-RA 169..1709 17..1559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:45 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1707 17..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:45 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1146893..1147073 1373..1553 100   Plus
2L 1143371..1143410 17..56 100 -> Plus
2L 1145444..1146472 57..1085 100 -> Plus
2L 1146539..1146825 1086..1372 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:46 Download gff for BS11318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1143371..1143410 17..56 100 -> Plus
arm_2L 1145444..1146472 57..1085 100 -> Plus
arm_2L 1146539..1146825 1086..1372 100 -> Plus
arm_2L 1146893..1147073 1373..1553 100   Plus

BS11318.pep Sequence

Translation from 16 to 1554

> BS11318.pep
MTDEVPAKGSILGKLVPARYVLALLGSIGMAIVYGLKVNLSVAMVAMVNH
TAIKAHGDGGGHGGHGSVILSNASQVSLVEECNPPGGASNVTAKVEDGPF
DWSEPLQGTLLSCYFWGYLVSQIPLAHVAENFSAKWVMLFSVAINVVCTL
LTPVFTELHYGGLILMRVLEGVGGGASFPAMHVMIASWAPPTERMVMSTI
IYVGTSAGTALSILLAGVCSAQWGWESVFYVMGALSCIWMLLWVILVQDN
PNKQRFISLEERQMITSSLGTEQKTEHHPAVPWGKVFTSVPFWAILIAHT
CSNFGWYMFLIEIPFYMKQVLKFNVASNAALSALPYFPMIIFSICLGKLL
DSLQAKGKITTTVARKTATSICTLIPGVCLLVLCYIGCRHYEAVSVMSVG
IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTK
GNQNIGAWRIIFGVTIVLFALEFLVFVFLGSGSEQPWNKAGTPKDPEAKD
EKTPLKELPTKP*

BS11318.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-PA 512 CG4726-PA 1..512 1..512 2675 100 Plus
Picot-PD 516 CG8098-PD 27..489 19..499 749 33.8 Plus
Picot-PC 516 CG8098-PC 27..489 19..499 749 33.8 Plus
Picot-PA 516 CG8098-PA 27..489 19..499 749 33.8 Plus
Picot-PB 529 CG8098-PB 40..502 19..499 749 33.8 Plus