Clone BS11324 Report

Search the DGRC for BS11324

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptGlycogenin-RB
Protein status:BS11324.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11324.3prime Sequence

886 bp (853 high quality bases) assembled on 2006-04-18

> BS11324.3prime
ATGGTCTAGAAAGCTTCTATGAGCTACCAGTTTCTTCCGACTCCTTATCG
GTCTTCCTCTCCAGCGTCTGCGATATTTTCTTCCAGATATTCTCGAACGA
ATCGGCGCCGGTGTAGTCAATCTGTCCAGACTCCCAGCACTGGCGGCGCA
TCTGGTTCTCGTAGGCCTCCTGTTCGGGAGTGCGCTGCTGACCGATGCGT
AGCTGTGACAGAGCACCAGCCAGACCCGCCATTTCGGTGGACAGGGACTG
GATGACATTTTCGCAAAAGATGTTCCACCACAGCTGAATCAAATCCTGGG
CATGAGCATACTCCGACGAAACGCTGGCCACCTTTGTTTCCGAGTTGAAC
TGAATCAGCCAGGGCTTCAGCTTGCCGGCAAAATGCAAAATCTTAATCTT
ATCTCTGAACTGTTTGAAGGCGGGCAGATAACAGTACGAGGCATAAGCCG
TCACATTGTACACAAATGGCAAATGCTTCTTAATGTCCGCCGTCGACCAG
TCGGCAAAGAACTGATTCAGCAGACCCTGGTCACCGCCATCGAAGCTGCC
ATTCTTCACGGCAAACTCTGTGATCTGGGCAAAGGTGTCCACGCTAGGTT
TGAACACAAACACGCCGGAATTGAAGCAATCCGGCCAGCTGACATCCGGA
GCAGCCGACAGTTCCTCGCGCTCGAAGAGCTCATCGCAGTTTTGCAAGAC
CAGTGTGTCCGCATCCAGGAAGACGCACTTCTCAAACTGAACGAGGCGCC
AGCAGTGGAGTTTTGTGAAGGTCACGCCTAGTTCGGGTCGCGAGAGGAGC
GCCAGATTGGCGGCATCCTGTGAGTCGAGCACATTGACCTCCTGCACCAC
ATTGTAGACCCTCTTTCAGTCGGTCGCGCATCGCCT

BS11324.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9480-PB 1002 Glycogenin-RB 159..1002 860..17 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RI 2404 CG44244-RI 329..1198 886..16 4315 99.8 Minus
Glycogenin-RB 2378 CG44244-RB 303..1172 886..16 4315 99.8 Minus
Glycogenin-RH 2010 CG44244-RH 303..1160 886..28 4255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21205009..21205301 701..409 1465 100 Minus
2R 25286936 2R 21208469..21208683 230..16 1075 100 Minus
2R 25286936 2R 21205361..21205542 410..229 910 100 Minus
2R 25286936 2R 21204739..21204925 886..699 875 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:26:40 has no hits.

BS11324.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:32 Download gff for BS11324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 134..1002 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:49 Download gff for BS11324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 134..1002 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:40:16 Download gff for BS11324.3prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 303..1172 16..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:55 Download gff for BS11324.3prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 303..1172 16..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:55 Download gff for BS11324.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21204739..21204923 701..886 98 -> Minus
2R 21208470..21208683 16..229 100   Minus
2R 21205010..21205299 411..700 100 -> Minus
2R 21205361..21205541 230..410 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:40:16 Download gff for BS11324.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092244..17092428 701..886 98 -> Minus
arm_2R 17092515..17092804 411..700 100 -> Minus
arm_2R 17092866..17093046 230..410 100 -> Minus
arm_2R 17095975..17096188 16..229 100   Minus

BS11324.5prime Sequence

877 bp (845 high quality bases) assembled on 2006-04-18

> BS11324.5prime
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGAGGCCTACGAG

BS11324.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9480-PB 1002 Glycogenin-RB 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RH 2010 CG44244-RH 170..1030 17..877 4305 100 Plus
Glycogenin-RB 2378 CG44244-RB 170..1030 17..877 4305 100 Plus
Glycogenin-RI 2404 CG44244-RI 203..1056 24..877 4270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21204613..21204925 24..336 1565 100 Plus
2R 25286936 2R 21205009..21205301 334..626 1465 100 Plus
2R 25286936 2R 21205361..21205542 625..806 910 100 Plus
2R 25286936 2R 21208469..21208541 805..877 365 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:51:34 has no hits.

BS11324.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:33 Download gff for BS11324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:50 Download gff for BS11324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:25 Download gff for BS11324.5prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1030 17..877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:08 Download gff for BS11324.5prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1030 17..877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:08 Download gff for BS11324.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21204605..21204923 12..334 98 -> Plus
2R 21205010..21205299 335..624 100 -> Plus
2R 21205361..21205541 625..805 100 -> Plus
2R 21208470..21208541 806..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:25 Download gff for BS11324.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092110..17092428 12..334 98 -> Plus
arm_2R 17092515..17092804 335..624 100 -> Plus
arm_2R 17092866..17093046 625..805 100 -> Plus
arm_2R 17095975..17096046 806..877 100   Plus

BS11324.complete Sequence

1034 bp assembled on 2006-11-01

GenBank Submission: FJ636822

> BS11324.complete
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTG
GGAGTCTGGACAGATTGACTACACCGGCGCCGATTCGTTCGAGAATATCT
GGAAGAAAATATCGCAGACGCTGGAGAGGAAGACCGATAAGGAGTCGGAA
GAAACTGGTAGCTCATAGAAGCTTTCTAGACCAT

BS11324.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RB 1002 CG44244-PB 1..1002 17..1018 5010 100 Plus
Glycogenin-RH 1005 CG44244-PH 1..991 17..1007 4955 100 Plus
Glycogenin-RI 864 CG44244-PI 1..864 155..1018 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RB 2378 CG44244-RB 170..1172 17..1019 5015 100 Plus
Glycogenin-RI 2404 CG44244-RI 203..1198 24..1019 4980 100 Plus
Glycogenin-RH 2010 CG44244-RH 170..1160 17..1007 4955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21204613..21204925 24..336 1565 100 Plus
2R 25286936 2R 21205009..21205301 334..626 1465 100 Plus
2R 25286936 2R 21208469..21208683 805..1019 1075 100 Plus
2R 25286936 2R 21205361..21205542 625..806 910 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:53:27 has no hits.

BS11324.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:36 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 17..1018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:52 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 166..1168 17..1019 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:57 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1171 17..1018 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:37 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 166..1168 17..1019 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:24 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1171 17..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:24 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21205361..21205541 625..805 100 -> Plus
2R 21208470..21208682 806..1018 100   Plus
2R 21204609..21204923 17..334 99 -> Plus
2R 21205010..21205299 335..624 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:57 Download gff for BS11324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092114..17092428 17..334 99 -> Plus
arm_2R 17092515..17092804 335..624 100 -> Plus
arm_2R 17092866..17093046 625..805 100 -> Plus
arm_2R 17095975..17096187 806..1018 100   Plus

BS11324.pep Sequence

Translation from 16 to 1017

> BS11324.pep
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI
DYTGADSFENIWKKISQTLERKTDKESEETGSS*

BS11324.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-PB 333 CG44244-PB 1..333 1..333 1744 100 Plus
Glycogenin-PH 334 CG44244-PH 1..330 1..330 1730 100 Plus
Glycogenin-PG 356 CG44244-PG 1..356 1..333 1710 93.5 Plus
Glycogenin-PI 287 CG44244-PI 1..287 47..333 1516 100 Plus
Glycogenin-PD 545 CG44244-PD 1..326 1..329 1385 82.6 Plus