Clone Sequence Records
BS11324.3prime Sequence
886 bp (853 high quality bases) assembled on 2006-04-18
> BS11324.3prime
ATGGTCTAGAAAGCTTCTATGAGCTACCAGTTTCTTCCGACTCCTTATCG
GTCTTCCTCTCCAGCGTCTGCGATATTTTCTTCCAGATATTCTCGAACGA
ATCGGCGCCGGTGTAGTCAATCTGTCCAGACTCCCAGCACTGGCGGCGCA
TCTGGTTCTCGTAGGCCTCCTGTTCGGGAGTGCGCTGCTGACCGATGCGT
AGCTGTGACAGAGCACCAGCCAGACCCGCCATTTCGGTGGACAGGGACTG
GATGACATTTTCGCAAAAGATGTTCCACCACAGCTGAATCAAATCCTGGG
CATGAGCATACTCCGACGAAACGCTGGCCACCTTTGTTTCCGAGTTGAAC
TGAATCAGCCAGGGCTTCAGCTTGCCGGCAAAATGCAAAATCTTAATCTT
ATCTCTGAACTGTTTGAAGGCGGGCAGATAACAGTACGAGGCATAAGCCG
TCACATTGTACACAAATGGCAAATGCTTCTTAATGTCCGCCGTCGACCAG
TCGGCAAAGAACTGATTCAGCAGACCCTGGTCACCGCCATCGAAGCTGCC
ATTCTTCACGGCAAACTCTGTGATCTGGGCAAAGGTGTCCACGCTAGGTT
TGAACACAAACACGCCGGAATTGAAGCAATCCGGCCAGCTGACATCCGGA
GCAGCCGACAGTTCCTCGCGCTCGAAGAGCTCATCGCAGTTTTGCAAGAC
CAGTGTGTCCGCATCCAGGAAGACGCACTTCTCAAACTGAACGAGGCGCC
AGCAGTGGAGTTTTGTGAAGGTCACGCCTAGTTCGGGTCGCGAGAGGAGC
GCCAGATTGGCGGCATCCTGTGAGTCGAGCACATTGACCTCCTGCACCAC
ATTGTAGACCCTCTTTCAGTCGGTCGCGCATCGCCT
BS11324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9480-PB | 1002 | Glycogenin-RB | 159..1002 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RI | 2404 | CG44244-RI | 329..1198 | 886..16 | 4315 | 99.8 | Minus |
Glycogenin-RB | 2378 | CG44244-RB | 303..1172 | 886..16 | 4315 | 99.8 | Minus |
Glycogenin-RH | 2010 | CG44244-RH | 303..1160 | 886..28 | 4255 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21205009..21205301 | 701..409 | 1465 | 100 | Minus |
2R | 25286936 | 2R | 21208469..21208683 | 230..16 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 21205361..21205542 | 410..229 | 910 | 100 | Minus |
2R | 25286936 | 2R | 21204739..21204925 | 886..699 | 875 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:26:40 has no hits.
BS11324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:32 Download gff for
BS11324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 134..1002 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:49 Download gff for
BS11324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 134..1002 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:40:16 Download gff for
BS11324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 303..1172 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:55 Download gff for
BS11324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 303..1172 | 16..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:55 Download gff for
BS11324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21204739..21204923 | 701..886 | 98 | -> | Minus |
2R | 21208470..21208683 | 16..229 | 100 | | Minus |
2R | 21205010..21205299 | 411..700 | 100 | -> | Minus |
2R | 21205361..21205541 | 230..410 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:40:16 Download gff for
BS11324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17092244..17092428 | 701..886 | 98 | -> | Minus |
arm_2R | 17092515..17092804 | 411..700 | 100 | -> | Minus |
arm_2R | 17092866..17093046 | 230..410 | 100 | -> | Minus |
arm_2R | 17095975..17096188 | 16..229 | 100 | | Minus |
BS11324.5prime Sequence
877 bp (845 high quality bases) assembled on 2006-04-18
> BS11324.5prime
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGAGGCCTACGAG
BS11324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9480-PB | 1002 | Glycogenin-RB | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RH | 2010 | CG44244-RH | 170..1030 | 17..877 | 4305 | 100 | Plus |
Glycogenin-RB | 2378 | CG44244-RB | 170..1030 | 17..877 | 4305 | 100 | Plus |
Glycogenin-RI | 2404 | CG44244-RI | 203..1056 | 24..877 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21204613..21204925 | 24..336 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 21205009..21205301 | 334..626 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21205361..21205542 | 625..806 | 910 | 100 | Plus |
2R | 25286936 | 2R | 21208469..21208541 | 805..877 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:51:34 has no hits.
BS11324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:33 Download gff for
BS11324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:50 Download gff for
BS11324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:25 Download gff for
BS11324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1030 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:08 Download gff for
BS11324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1030 | 17..877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:08 Download gff for
BS11324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21204605..21204923 | 12..334 | 98 | -> | Plus |
2R | 21205010..21205299 | 335..624 | 100 | -> | Plus |
2R | 21205361..21205541 | 625..805 | 100 | -> | Plus |
2R | 21208470..21208541 | 806..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:25 Download gff for
BS11324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17092110..17092428 | 12..334 | 98 | -> | Plus |
arm_2R | 17092515..17092804 | 335..624 | 100 | -> | Plus |
arm_2R | 17092866..17093046 | 625..805 | 100 | -> | Plus |
arm_2R | 17095975..17096046 | 806..877 | 100 | | Plus |
BS11324.complete Sequence
1034 bp assembled on 2006-11-01
GenBank Submission: FJ636822
> BS11324.complete
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTG
GGAGTCTGGACAGATTGACTACACCGGCGCCGATTCGTTCGAGAATATCT
GGAAGAAAATATCGCAGACGCTGGAGAGGAAGACCGATAAGGAGTCGGAA
GAAACTGGTAGCTCATAGAAGCTTTCTAGACCAT
BS11324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RB | 1002 | CG44244-PB | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Glycogenin-RH | 1005 | CG44244-PH | 1..991 | 17..1007 | 4955 | 100 | Plus |
Glycogenin-RI | 864 | CG44244-PI | 1..864 | 155..1018 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RB | 2378 | CG44244-RB | 170..1172 | 17..1019 | 5015 | 100 | Plus |
Glycogenin-RI | 2404 | CG44244-RI | 203..1198 | 24..1019 | 4980 | 100 | Plus |
Glycogenin-RH | 2010 | CG44244-RH | 170..1160 | 17..1007 | 4955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21204613..21204925 | 24..336 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 21205009..21205301 | 334..626 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21208469..21208683 | 805..1019 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 21205361..21205542 | 625..806 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:53:27 has no hits.
BS11324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:36 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 1..1002 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:52 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 166..1168 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:57 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1171 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:37 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 166..1168 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:24 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1171 | 17..1018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:24 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21205361..21205541 | 625..805 | 100 | -> | Plus |
2R | 21208470..21208682 | 806..1018 | 100 | | Plus |
2R | 21204609..21204923 | 17..334 | 99 | -> | Plus |
2R | 21205010..21205299 | 335..624 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:57 Download gff for
BS11324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17092114..17092428 | 17..334 | 99 | -> | Plus |
arm_2R | 17092515..17092804 | 335..624 | 100 | -> | Plus |
arm_2R | 17092866..17093046 | 625..805 | 100 | -> | Plus |
arm_2R | 17095975..17096187 | 806..1018 | 100 | | Plus |
BS11324.pep Sequence
Translation from 16 to 1017
> BS11324.pep
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI
DYTGADSFENIWKKISQTLERKTDKESEETGSS*
BS11324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-PB | 333 | CG44244-PB | 1..333 | 1..333 | 1744 | 100 | Plus |
Glycogenin-PH | 334 | CG44244-PH | 1..330 | 1..330 | 1730 | 100 | Plus |
Glycogenin-PG | 356 | CG44244-PG | 1..356 | 1..333 | 1710 | 93.5 | Plus |
Glycogenin-PI | 287 | CG44244-PI | 1..287 | 47..333 | 1516 | 100 | Plus |
Glycogenin-PD | 545 | CG44244-PD | 1..326 | 1..329 | 1385 | 82.6 | Plus |