Clone BS11327 Report

Search the DGRC for BS11327

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG17134-RA
Protein status:BS11327.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11327.3prime Sequence

823 bp (808 high quality bases) assembled on 2006-04-18

> BS11327.3prime
ATGGTCTAGAAAGCTTTTAATAATCCGCCACCCTGGCGAAACCAATCCTT
TCGTTGCCCTTGTCGAAAACCGTGTAGAACTTGCCAATAAAGACATCACC
CAGAATCCAGAAGCTTAGTCCCTCCATGTAGGTGAAGGCGGACATGCAGT
AGGTTTGGCCATTCTGCGTTACCTTGACTATATAATCCCTTGGTGCCAGG
GTGAAGACAGTACCACCGATATTCAGGTTGACCTTGGGCAGGGATGAGAC
TCGGCCGCACCTCACGAATGCCTCACCGTCATTATCGGTGGCGCCCAGCT
GGCGATTGATCTTCCTGTAAGCGGCCAGTGGAACTGCGATTAAGGAGGTG
CCCGTATCGGCGATGGCTTGGCATCCGTTGCACAGCAAAGTGCCATTGGT
CTTGATGGTGTTCACCTTGAACTGCCAGTAGGCAGGAACGGAAACGGGCA
CATAGGTGAGGCTTCCCCTATAGAGACTCGAGTCAATACCGCCCAGGATC
AGTTCTCCACCGCGCACAGCGGTTCCCTGTCGCTTGAGATAGAAGGAGAT
AACTGGTTCATCGAGCAGTCCCTGGGAGATCATGTTGTCGAACGGCGGAG
TCACTCCATCGACGGCAATCGCGCTGAAGGCCAGTCCCAGGATTCCAGCA
AAAGGAGCATCCACGAAGGTTGTACCCGGCTCGCTGAGTGCTTCGCCGAA
TGTCTGATTCTGAATGCTGATTCCCGCTATGGTCACAATGTCGTTGGACA
GGAAACCCGACAGACTACCAGTTCCGTATTCGATGGCGAACTCCTCACCA
TTGGCCACATAAGTGCTGGATGC

BS11327.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-PA 1176 CG17134-RA 370..1176 823..17 4035 100 Minus
CG6508-PA 1272 CG6508-RA 802..839 382..345 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1263 CG17134-RA 398..1204 823..17 4035 100 Minus
Bace-RB 1415 CG13095-RB 1034..1146 150..35 185 78.4 Minus
Bace-RA 1200 CG13095-RA 1034..1146 150..35 185 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10821102..10821908 823..17 4035 100 Minus
Blast to na_te.dros performed on 2015-02-07 02:13:27 has no hits.

BS11327.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:39 Download gff for BS11327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 370..1176 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:57 Download gff for BS11327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 370..1176 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:24:59 Download gff for BS11327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 398..1204 17..823 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:03:31 Download gff for BS11327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 398..1204 17..823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:03:31 Download gff for BS11327.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10821102..10821908 17..823 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:24:59 Download gff for BS11327.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10821102..10821908 17..823 100   Minus

BS11327.5prime Sequence

802 bp (801 high quality bases) assembled on 2006-04-18

> BS11327.5prime
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CC

BS11327.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-PA 1176 CG17134-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1263 CG17134-RA 26..814 14..802 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10820730..10821518 14..802 3945 100 Plus
Blast to na_te.dros performed on 2015-02-04 05:31:50 has no hits.

BS11327.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:40 Download gff for BS11327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:59 Download gff for BS11327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:36 Download gff for BS11327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 26..814 14..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:30 Download gff for BS11327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 26..814 14..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:30 Download gff for BS11327.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10820730..10821518 14..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:36 Download gff for BS11327.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10820730..10821518 14..802 100   Plus

BS11327.complete Sequence

1208 bp assembled on 2006-11-01

GenBank Submission: FJ636823

> BS11327.complete
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CCATCAAGACCAATGGCACTTTGCTGTGCAACGGATGCCAAGCCATCGCC
GATACGGGCACCTCCTTAATCGCAGTTCCACTGGCCGCTTACAGGAAGAT
CAATCGCCAGCTGGGCGCCACCGATAATGACGGTGAGGCATTCGTGAGGT
GCGGCCGAGTCTCATCCCTGCCCAAGGTCAACCTGAATATCGGTGGTACT
GTCTTCACCCTGGCACCAAGGGATTATATAGTCAAGGTAACGCAGAATGG
CCAAACCTACTGCATGTCCGCCTTCACCTACATGGAGGGACTAAGCTTCT
GGATTCTGGGTGATGTCTTTATTGGCAAGTTCTACACGGTTTTCGACAAG
GGCAACGAAAGGATTGGTTTCGCCAGGGTGGCGGATTATTAAAAGCTTTC
TAGACCAT

BS11327.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1176 CG17134-PA 1..1176 17..1192 5880 100 Plus
CG6508-RA 1272 CG6508-PA 802..858 827..883 180 87.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1263 CG17134-RA 26..1204 14..1192 5895 100 Plus
CG6508-RA 1379 CG6508-RA 818..874 827..883 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10820730..10821908 14..1192 5895 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:51:55 has no hits.

BS11327.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:38 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 1..1176 17..1192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:53 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 21..1199 14..1192 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:10 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 29..1202 17..1190 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:38 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 21..1199 14..1192 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:53 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 29..1202 17..1190 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:53 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10820733..10821906 17..1190 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:10 Download gff for BS11327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10820733..10821906 17..1190 100   Plus

BS11327.pep Sequence

Translation from 16 to 1191

> BS11327.pep
MRQLLVLLVLVGIGHSAAKLNRVQLQVNKNFTKTHGSVKAEKTVLASKYS
FLAETSFSVSSSGATENLHNSMNNEYYGVIAIGTPEQRFNILFDTGSANL
WVPSASCPASNTACQRHNKYDSSASSTYVANGEEFAIEYGTGSLSGFLSN
DIVTIAGISIQNQTFGEALSEPGTTFVDAPFAGILGLAFSAIAVDGVTPP
FDNMISQGLLDEPVISFYLKRQGTAVRGGELILGGIDSSLYRGSLTYVPV
SVPAYWQFKVNTIKTNGTLLCNGCQAIADTGTSLIAVPLAAYRKINRQLG
ATDNDGEAFVRCGRVSSLPKVNLNIGGTVFTLAPRDYIVKVTQNGQTYCM
SAFTYMEGLSFWILGDVFIGKFYTVFDKGNERIGFARVADY*

BS11327.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-PA 391 CG17134-PA 1..391 1..391 2008 100 Plus
CG6508-PA 423 CG6508-PA 7..387 4..388 1139 58.1 Plus
Bace-PB 372 CG13095-PB 3..372 2..389 1023 54.4 Plus
Bace-PA 372 CG13095-PA 3..372 2..389 1023 54.4 Plus
CG33128-PA 405 CG33128-PA 1..405 1..389 1005 49.3 Plus