Clone Sequence Records
BS11327.3prime Sequence
823 bp (808 high quality bases) assembled on 2006-04-18
> BS11327.3prime
ATGGTCTAGAAAGCTTTTAATAATCCGCCACCCTGGCGAAACCAATCCTT
TCGTTGCCCTTGTCGAAAACCGTGTAGAACTTGCCAATAAAGACATCACC
CAGAATCCAGAAGCTTAGTCCCTCCATGTAGGTGAAGGCGGACATGCAGT
AGGTTTGGCCATTCTGCGTTACCTTGACTATATAATCCCTTGGTGCCAGG
GTGAAGACAGTACCACCGATATTCAGGTTGACCTTGGGCAGGGATGAGAC
TCGGCCGCACCTCACGAATGCCTCACCGTCATTATCGGTGGCGCCCAGCT
GGCGATTGATCTTCCTGTAAGCGGCCAGTGGAACTGCGATTAAGGAGGTG
CCCGTATCGGCGATGGCTTGGCATCCGTTGCACAGCAAAGTGCCATTGGT
CTTGATGGTGTTCACCTTGAACTGCCAGTAGGCAGGAACGGAAACGGGCA
CATAGGTGAGGCTTCCCCTATAGAGACTCGAGTCAATACCGCCCAGGATC
AGTTCTCCACCGCGCACAGCGGTTCCCTGTCGCTTGAGATAGAAGGAGAT
AACTGGTTCATCGAGCAGTCCCTGGGAGATCATGTTGTCGAACGGCGGAG
TCACTCCATCGACGGCAATCGCGCTGAAGGCCAGTCCCAGGATTCCAGCA
AAAGGAGCATCCACGAAGGTTGTACCCGGCTCGCTGAGTGCTTCGCCGAA
TGTCTGATTCTGAATGCTGATTCCCGCTATGGTCACAATGTCGTTGGACA
GGAAACCCGACAGACTACCAGTTCCGTATTCGATGGCGAACTCCTCACCA
TTGGCCACATAAGTGCTGGATGC
BS11327.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-PA | 1176 | CG17134-RA | 370..1176 | 823..17 | 4035 | 100 | Minus |
CG6508-PA | 1272 | CG6508-RA | 802..839 | 382..345 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1263 | CG17134-RA | 398..1204 | 823..17 | 4035 | 100 | Minus |
Bace-RB | 1415 | CG13095-RB | 1034..1146 | 150..35 | 185 | 78.4 | Minus |
Bace-RA | 1200 | CG13095-RA | 1034..1146 | 150..35 | 185 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10821102..10821908 | 823..17 | 4035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-07 02:13:27 has no hits.
BS11327.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:39 Download gff for
BS11327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 370..1176 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:57 Download gff for
BS11327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 370..1176 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:24:59 Download gff for
BS11327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 398..1204 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:03:31 Download gff for
BS11327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 398..1204 | 17..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:03:31 Download gff for
BS11327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10821102..10821908 | 17..823 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:24:59 Download gff for
BS11327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10821102..10821908 | 17..823 | 100 | | Minus |
BS11327.5prime Sequence
802 bp (801 high quality bases) assembled on 2006-04-18
> BS11327.5prime
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CC
BS11327.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-PA | 1176 | CG17134-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1263 | CG17134-RA | 26..814 | 14..802 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10820730..10821518 | 14..802 | 3945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:31:50 has no hits.
BS11327.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:40 Download gff for
BS11327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:34:59 Download gff for
BS11327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:36 Download gff for
BS11327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 26..814 | 14..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:30 Download gff for
BS11327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 26..814 | 14..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:30 Download gff for
BS11327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10820730..10821518 | 14..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:36 Download gff for
BS11327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10820730..10821518 | 14..802 | 100 | | Plus |
BS11327.complete Sequence
1208 bp assembled on 2006-11-01
GenBank Submission: FJ636823
> BS11327.complete
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CCATCAAGACCAATGGCACTTTGCTGTGCAACGGATGCCAAGCCATCGCC
GATACGGGCACCTCCTTAATCGCAGTTCCACTGGCCGCTTACAGGAAGAT
CAATCGCCAGCTGGGCGCCACCGATAATGACGGTGAGGCATTCGTGAGGT
GCGGCCGAGTCTCATCCCTGCCCAAGGTCAACCTGAATATCGGTGGTACT
GTCTTCACCCTGGCACCAAGGGATTATATAGTCAAGGTAACGCAGAATGG
CCAAACCTACTGCATGTCCGCCTTCACCTACATGGAGGGACTAAGCTTCT
GGATTCTGGGTGATGTCTTTATTGGCAAGTTCTACACGGTTTTCGACAAG
GGCAACGAAAGGATTGGTTTCGCCAGGGTGGCGGATTATTAAAAGCTTTC
TAGACCAT
BS11327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1176 | CG17134-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
CG6508-RA | 1272 | CG6508-PA | 802..858 | 827..883 | 180 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1263 | CG17134-RA | 26..1204 | 14..1192 | 5895 | 100 | Plus |
CG6508-RA | 1379 | CG6508-RA | 818..874 | 827..883 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10820730..10821908 | 14..1192 | 5895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:51:55 has no hits.
BS11327.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:38 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 1..1176 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:53 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 21..1199 | 14..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:10 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 29..1202 | 17..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:38 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 21..1199 | 14..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:53 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 29..1202 | 17..1190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:53 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10820733..10821906 | 17..1190 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:10 Download gff for
BS11327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10820733..10821906 | 17..1190 | 100 | | Plus |
BS11327.pep Sequence
Translation from 16 to 1191
> BS11327.pep
MRQLLVLLVLVGIGHSAAKLNRVQLQVNKNFTKTHGSVKAEKTVLASKYS
FLAETSFSVSSSGATENLHNSMNNEYYGVIAIGTPEQRFNILFDTGSANL
WVPSASCPASNTACQRHNKYDSSASSTYVANGEEFAIEYGTGSLSGFLSN
DIVTIAGISIQNQTFGEALSEPGTTFVDAPFAGILGLAFSAIAVDGVTPP
FDNMISQGLLDEPVISFYLKRQGTAVRGGELILGGIDSSLYRGSLTYVPV
SVPAYWQFKVNTIKTNGTLLCNGCQAIADTGTSLIAVPLAAYRKINRQLG
ATDNDGEAFVRCGRVSSLPKVNLNIGGTVFTLAPRDYIVKVTQNGQTYCM
SAFTYMEGLSFWILGDVFIGKFYTVFDKGNERIGFARVADY*
BS11327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-PA | 391 | CG17134-PA | 1..391 | 1..391 | 2008 | 100 | Plus |
CG6508-PA | 423 | CG6508-PA | 7..387 | 4..388 | 1139 | 58.1 | Plus |
Bace-PB | 372 | CG13095-PB | 3..372 | 2..389 | 1023 | 54.4 | Plus |
Bace-PA | 372 | CG13095-PA | 3..372 | 2..389 | 1023 | 54.4 | Plus |
CG33128-PA | 405 | CG33128-PA | 1..405 | 1..389 | 1005 | 49.3 | Plus |