Clone Sequence Records
BS11328.5prime Sequence
636 bp (635 high quality bases) assembled on 2006-04-18
> BS11328.5prime
GAAGTTATCAGTCGACATGATGGCCAAGGACAAGGGTCTGGCTGTGGCCG
GAACGGCGGCCCCCTTACCGGCCGCCCTCGACCACGAGTGGTCCGCCGAG
GAAGAGCTGCAGCTGTTCCATGCAATGGAAGGCCTGCGCCCGGTGGGCAT
CAACAAGCACTTCTACATGTCCTGCATTGTCCAGCGTCTGTCCAAGTCGC
TGAACCGTGAAATGCCCAGCGAGCTGATCTGGCGCCACCTGGGCACCATG
TACAAGCTGAAGGAACTGGACGATCTGGAGTCGCTGCCCTTTCCCAACGA
GGAGCGCGAGTTCAGCCTGCCGGAGCAGGATTACGGAACGCTACAGACCA
AAAAGACGGTGGAAGTGCATGCGAACGAGGAGGCTGCAGAGGCACAGTCG
GCCCCTCCAACAGCAGAGACCAATGGCAAAGCTCCACCTGCAACCAAAAC
GCCGGTACCGACGAATTCCACCAAGGACGGCGACAAAAAGCCCGTCGCCA
AGCCCCAGGAGCAGCTGCCCAAGCGTCCGGCCAAGCGCACACGCGGCTCC
ATGTCCAACGAGTCCATCAGCCCCTCCACTACGCCGCCGCCGGTGCAGAG
CAACAAGCGCCGTCGCATATAGAAGCTTTCTAGACC
BS11328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13746-PA | 606 | MrgBP-RA | 1..606 | 17..622 | 3005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..674 | 17..622 | 3015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 431..17 | 2060 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8900650..8900842 | 622..430 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:51:47 has no hits.
BS11328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:42 Download gff for
BS11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:03 Download gff for
BS11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13746-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:28 Download gff for
BS11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..674 | 8..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:12 Download gff for
BS11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..674 | 8..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:12 Download gff for
BS11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900650..8900840 | 432..622 | 100 | <- | Minus |
| 2R | 8900893..8901315 | 8..431 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:28 Download gff for
BS11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788155..4788345 | 432..622 | 100 | <- | Minus |
| arm_2R | 4788398..4788820 | 8..431 | 98 | | Minus |
BS11328.3prime Sequence
636 bp (635 high quality bases) assembled on 2006-04-18
> BS11328.3prime
ATGGTCTAGAAAGCTTCTATATGCGACGGCGCTTGTTGCTCTGCACCGGC
GGCGGCGTAGTGGAGGGGCTGATGGACTCGTTGGACATGGAGCCGCGTGT
GCGCTTGGCCGGACGCTTGGGCAGCTGCTCCTGGGGCTTGGCGACGGGCT
TTTTGTCGCCGTCCTTGGTGGAATTCGTCGGTACCGGCGTTTTGGTTGCA
GGTGGAGCTTTGCCATTGGTCTCTGCTGTTGGAGGGGCCGACTGTGCCTC
TGCAGCCTCCTCGTTCGCATGCACTTCCACCGTCTTTTTGGTCTGTAGCG
TTCCGTAATCCTGCTCCGGCAGGCTGAACTCGCGCTCCTCGTTGGGAAAG
GGCAGCGACTCCAGATCGTCCAGTTCCTTCAGCTTGTACATGGTGCCCAG
GTGGCGCCAGATCAGCTCGCTGGGCATTTCACGGTTCAGCGACTTGGACA
GACGCTGGACAATGCAGGACATGTAGAAGTGCTTGTTGATGCCCACCGGG
CGCAGGCCTTCCATTGCATGGAACAGCTGCAGCTCTTCCTCGGCGGACCA
CTCGTGGTCGAGGGCGGCCGGTAAGGGGGCCGCCGTTCCGGCCACAGCCA
GACCCTTGTCCTTGGCCATCATGTCGACTGATAACT
BS11328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13746-PA | 606 | MrgBP-RA | 1..606 | 622..17 | 3005 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..674 | 622..17 | 3015 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 208..622 | 2060 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8900650..8900842 | 17..209 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:08:58 has no hits.
BS11328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:41 Download gff for
BS11328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-PA | 1..606 | 17..622 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:01 Download gff for
BS11328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13746-PA | 1..606 | 17..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:52:24 Download gff for
BS11328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..674 | 17..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:48 Download gff for
BS11328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..674 | 17..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:48 Download gff for
BS11328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900650..8900840 | 17..207 | 100 | <- | Plus |
| 2R | 8900893..8901315 | 208..631 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:52:24 Download gff for
BS11328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788155..4788345 | 17..207 | 100 | <- | Plus |
| arm_2R | 4788398..4788820 | 208..631 | 98 | | Plus |
BS11328.complete Sequence
638 bp assembled on 2006-11-01
GenBank Submission: FJ636824
> BS11328.complete
GAAGTTATCAGTCGACATGATGGCCAAGGACAAGGGTCTGGCTGTGGCCG
GAACGGCGGCCCCCTTACCGGCCGCCCTCGACCACGAGTGGTCCGCCGAG
GAAGAGCTGCAGCTGTTCCATGCAATGGAAGGCCTGCGCCCGGTGGGCAT
CAACAAGCACTTCTACATGTCCTGCATTGTCCAGCGTCTGTCCAAGTCGC
TGAACCGTGAAATGCCCAGCGAGCTGATCTGGCGCCACCTGGGCACCATG
TACAAGCTGAAGGAACTGGACGATCTGGAGTCGCTGCCCTTTCCCAACGA
GGAGCGCGAGTTCAGCCTGCCGGAGCAGGATTACGGAACGCTACAGACCA
AAAAGACGGTGGAAGTGCATGCGAACGAGGAGGCTGCAGAGGCACAGTCG
GCCCCTCCAACAGCAGAGACCAATGGCAAAGCTCCACCTGCAACCAAAAC
GCCGGTACCGACGAATTCCACCAAGGACGGCGACAAAAAGCCCGTCGCCA
AGCCCCAGGAGCAGCTGCCCAAGCGTCCGGCCAAGCGCACACGCGGCTCC
ATGTCCAACGAGTCCATCAGCCCCTCCACTACGCCGCCGCCGGTGCAGAG
CAACAAGCGCCGTCGCATATAGAAGCTTTCTAGACCAT
BS11328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 606 | CG13746-PA | 1..606 | 17..622 | 3015 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..674 | 17..622 | 3015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 431..17 | 2060 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8900650..8900842 | 622..430 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:11:36 has no hits.
BS11328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:39 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:25 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 58..671 | 8..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:31 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 69..674 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:39 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 58..671 | 8..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:56 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 69..674 | 17..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:56 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900650..8900840 | 432..622 | 100 | <- | Minus |
| 2R | 8900893..8901307 | 17..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:31 Download gff for
BS11328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788155..4788345 | 432..622 | 100 | <- | Minus |
| arm_2R | 4788398..4788812 | 17..431 | 99 | | Minus |
BS11328.pep Sequence
Translation from 16 to 621
> BS11328.pep
MMAKDKGLAVAGTAAPLPAALDHEWSAEEELQLFHAMEGLRPVGINKHFY
MSCIVQRLSKSLNREMPSELIWRHLGTMYKLKELDDLESLPFPNEEREFS
LPEQDYGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTN
STKDGDKKPVAKPQEQLPKRPAKRTRGSMSNESISPSTTPPPVQSNKRRR
I*
BS11328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-PA | 201 | CG13746-PA | 1..201 | 1..201 | 1048 | 100 | Plus |
