Clone Sequence Records
BS11331.3prime Sequence
914 bp (851 high quality bases) assembled on 2006-04-18
> BS11331.3prime
ATGGTCTAGAAAGCTTCTAATTCTTCTTGGTCTTCTTCTTCGTCGGAGTG
CTCTTCGGCTTGGAGCTCCTGCGGCAGATCAGGATTAGAACTACGATTGG
CAACAGGATCACAGCGAGACCTAGACCCACAATGTCCAGTAGGTAGAACT
GGTACCAGGGTAGATGTACACCAGCGGCCACCAGATGAGGAGCACCTCGG
TGCTCGATCACATAGTTGATCCAATATATGGCCGTATCCATGGCACCGAG
TGGTCGATCGCGGAATATCCGGGAGGCCTTCTTAATGTTATTCCTATACT
TTGGATTCTCAATCAGTTCCATCAGCAGACCTCGCAACTCCTCCACCGTG
ACTTTCCGGTAATCCAGTCCCAGTGCATATTCTGCACTCTTACCCTGGTT
AATGTTCTGATGCTGATCACAGTAGACTGGCATTCCCAATATGGGAACAC
CATTGTACACCGCCTCCTGGGTGCCGAAGAGTCCTCCATGGGCAATGAAA
ACCTTGACATTCGGGTGCGCCAGAATGTCGCCCTGAGGTAACCAACTTTG
CACCTTAACGTTAGCCGGCAAATTGGGCAGAGATTCATCTTCGAATTTCC
AGAGAACGCGTTGCTTCAGACTGCCAAAGACTTCCAGGAATACTTTGAGC
TTCTCAGGCGGCAAGTCGGCACTTCTCACCTGGGAACCCAAGCTAAAGTA
AATGGCACCATGTGTGGCTCCGTCCAGGAATTTTTGTAGATGCTCCGGTA
GTGCCTTCGGTGGTTGAATGTGCAAACCGCCCACTGGGATCATATTATAT
GCCATCGGTCTCGAAGATGCCAGTGGCATGTAGCTGTTCAACAGAATGGC
TGAGATATTACGTTCGAGTTCTTTGATGGTCGGTACTCTGTCGAGTAGCT
TGGAGAAGTGCTTC
BS11331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-PA | 1599 | CG4302-RA | 702..1599 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1754 | CG4302-RA | 769..1668 | 914..15 | 4500 | 100 | Minus |
CG6475-RD | 1683 | CG6475-RD | 765..1213 | 847..399 | 460 | 74.3 | Minus |
CG6475-RD | 1683 | CG6475-RD | 1331..1477 | 281..135 | 255 | 78.2 | Minus |
CG15661-RB | 1899 | CG15661-RB | 1237..1427 | 601..411 | 215 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21212966..21213639 | 15..688 | 3370 | 100 | Plus |
2R | 25286936 | 2R | 21213704..21213932 | 686..914 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 21398251..21398525 | 399..673 | 370 | 75.6 | Plus |
3R | 32079331 | 3R | 21397987..21398133 | 135..281 | 255 | 78.2 | Plus |
2R | 25286936 | 2R | 21215971..21216093 | 413..535 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:55:20 has no hits.
BS11331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:45 Download gff for
BS11331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 702..1599 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:07 Download gff for
BS11331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 702..1599 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:37 Download gff for
BS11331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 769..1668 | 15..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:55 Download gff for
BS11331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 769..1668 | 15..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:55 Download gff for
BS11331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21212966..21213638 | 15..687 | 100 | <- | Plus |
2R | 21213706..21213932 | 688..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:37 Download gff for
BS11331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17100471..17101143 | 15..687 | 100 | <- | Plus |
arm_2R | 17101211..17101437 | 688..914 | 100 | | Plus |
BS11331.5prime Sequence
872 bp (819 high quality bases) assembled on 2006-04-18
> BS11331.5prime
GAAGTTATCAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCC
TAAGTCTGGTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATC
TTGGCAGCATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGC
CATCATACGGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTC
CGTTTTCCTTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTG
ATTCCTCAATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAA
CACCGTTTTGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGG
TCAATGTGATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAG
ATTCAGGCAGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCT
GCTGGCGGAGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGT
ACCAGATCCCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTT
AGTCAGCTATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTA
TATGCCCTATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGG
CCATGAGTGCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGT
CAGGATGCGGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACC
GACCATCAAAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCT
ACATGCCACTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTG
GGCGGTTTGCACATTCAACACC
BS11331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-PA | 1599 | CG4302-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1754 | CG4302-RA | 68..920 | 17..869 | 4265 | 100 | Plus |
CG6475-RD | 1683 | CG6475-RD | 81..207 | 101..228 | 225 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21213781..21214371 | 869..279 | 2955 | 100 | Minus |
2R | 25286936 | 2R | 21214427..21214686 | 278..19 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 21399433..21399554 | 222..101 | 220 | 78.7 | Minus |
Blast to na_te.dros performed 2015-02-10 07:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 726..808 | 125..43 | 135 | 65.5 | Minus |
BS11331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:46 Download gff for
BS11331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 1..857 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:08 Download gff for
BS11331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 1..857 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:25 Download gff for
BS11331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 57..924 | 4..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:24 Download gff for
BS11331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 57..924 | 4..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:24 Download gff for
BS11331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21213777..21214371 | 279..872 | 99 | <- | Minus |
2R | 21214427..21214695 | 9..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:25 Download gff for
BS11331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17101282..17101876 | 279..872 | 99 | <- | Minus |
arm_2R | 17101932..17102200 | 9..278 | 98 | | Minus |
BS11331.complete Sequence
1631 bp assembled on 2006-11-01
GenBank Submission: FJ636825
> BS11331.complete
GAAGTTATCAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCC
TAAGTCTGGTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATC
TTGGCAGCATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGC
CATCATACGGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTC
CGTTTTCCTTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTG
ATTCCTCAATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAA
CACCGTTTTGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGG
TCAATGTGATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAG
ATTCAGGCAGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCT
GCTGGCGGAGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGT
ACCAGATCCCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTT
AGTCAGCTATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTA
TATGCCCTATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGG
CCATGAGTGCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGT
CAGGATGCGGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACC
GACCATCAAAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCT
ACATGCCACTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTG
GGCGGTTTGCACATTCAACCACCGAAGGCACTACCGGAGCATCTACAAAA
ATTCCTGGACGGAGCCACACATGGTGCCATTTACTTTAGCTTGGGTTCCC
AGGTGAGAAGTGCCGACTTGCCGCCTGAGAAGCTCAAAGTATTCCTGGAA
GTCTTTGGCAGTCTGAAGCAACGCGTTCTCTGGAAATTCGAAGATGAATC
TCTGCCCAATTTGCCGGCTAACGTTAAGGTGCAAAGTTGGTTACCTCAGG
GCGACATTCTGGCGCACCCGAATGTCAAGGTTTTCATTGCCCATGGAGGA
CTCTTCGGCACCCAGGAGGCGGTGTACAATGGTGTTCCCATATTGGGAAT
GCCAGTCTACTGTGATCAGCATCAGAACATTAACCAGGGTAAGAGTGCAG
AATATGCACTGGGACTGGATTACCGGAAAGTCACGGTGGAGGAGTTGCGA
GGTCTGCTGATGGAACTGATTGAGAATCCAAAGTATAGGAATAACATTAA
GAAGGCCTCCCGGATATTCCGCGATCGACCACTCGGTGCCATGGATACGG
CCATATATTGGATCAACTATGTGATCGAGCACCGAGGTGCTCCTCATCTG
GTGGCCGCTGGTGTACATCTACCCTGGTACCAGTTCTACCTACTGGACAT
TGTGGGTCTAGGTCTCGCTGTGATCCTGTTGCCAATCGTAGTTCTAATCC
TGATCTGCCGCAGGAGCTCCAAGCCGAAGAGCACTCCGACGAAGAAGAAG
ACCAAGAAGAATTAGAAGCTTTCTAGACCAT
BS11331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1599 | CG4302-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
CG6475-RD | 1581 | CG6475-PD | 748..1196 | 785..1233 | 460 | 73.5 | Plus |
CG6475-RD | 1581 | CG6475-PD | 1314..1460 | 1351..1497 | 255 | 78.2 | Plus |
CG6475-RD | 1581 | CG6475-PD | 64..185 | 101..222 | 220 | 78.7 | Plus |
CG15661-RB | 1593 | CG15661-PB | 1081..1205 | 1097..1221 | 205 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1754 | CG4302-RA | 68..1668 | 17..1617 | 8005 | 100 | Plus |
CG6475-RD | 1683 | CG6475-RD | 765..1213 | 785..1233 | 460 | 73.5 | Plus |
CG6475-RD | 1683 | CG6475-RD | 1331..1477 | 1351..1497 | 255 | 78.2 | Plus |
CG6475-RD | 1683 | CG6475-RD | 81..202 | 101..222 | 220 | 78.7 | Plus |
CG15661-RB | 1899 | CG15661-RB | 1303..1427 | 1097..1221 | 205 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21212966..21213639 | 1617..944 | 3370 | 100 | Minus |
2R | 25286936 | 2R | 21213704..21214371 | 946..279 | 3340 | 100 | Minus |
2R | 25286936 | 2R | 21214427..21214686 | 278..19 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 21398251..21398525 | 1233..959 | 370 | 75.6 | Minus |
3R | 32079331 | 3R | 21397987..21398133 | 1497..1351 | 255 | 78.2 | Minus |
3R | 32079331 | 3R | 21399433..21399554 | 222..101 | 220 | 78.7 | Minus |
2R | 25286936 | 2R | 21215971..21216093 | 1219..1097 | 195 | 77.2 | Minus |
Blast to na_te.dros performed 2014-11-26 21:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 726..808 | 125..43 | 135 | 65.5 | Minus |
BS11331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:40 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 1..1599 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:55 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 53..1664 | 4..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:56 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 68..1666 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:40 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 53..1664 | 4..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:49 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 68..1666 | 17..1615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:49 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21212968..21213638 | 945..1615 | 100 | <- | Minus |
2R | 21213706..21214371 | 279..944 | 100 | <- | Minus |
2R | 21214427..21214687 | 17..278 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:56 Download gff for
BS11331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17100473..17101143 | 945..1615 | 100 | <- | Minus |
arm_2R | 17101211..17101876 | 279..944 | 100 | <- | Minus |
arm_2R | 17101932..17102192 | 17..278 | 99 | | Minus |
BS11331.pep Sequence
Translation from 16 to 1614
> BS11331.pep
MSLKSALHIFLLSLVALQQLELGTGSRILAAFFFPGKSHFMMTNAIIREL
VKQGHEVTFITPFSLAKEKLGSNYKEIVIPQYDFWPEIKEMTNKNTVLEM
TDLPTFAFLRMVNVMGIHTTDFALEQPEIQAVINEKNKIGKYDLLLAEQF
FNEGALILGHLYQIPTITISTFGNANHLSQLFGVVSPWSYVPHAYMPYTD
RMTLWERIGNVAMSAAEDLVREFSYYPGQDAVLKKHFSKLLDRVPTIKEL
ERNISAILLNSYMPLASSRPMAYNMIPVGGLHIQPPKALPEHLQKFLDGA
THGAIYFSLGSQVRSADLPPEKLKVFLEVFGSLKQRVLWKFEDESLPNLP
ANVKVQSWLPQGDILAHPNVKVFIAHGGLFGTQEAVYNGVPILGMPVYCD
QHQNINQGKSAEYALGLDYRKVTVEELRGLLMELIENPKYRNNIKKASRI
FRDRPLGAMDTAIYWINYVIEHRGAPHLVAAGVHLPWYQFYLLDIVGLGL
AVILLPIVVLILICRRSSKPKSTPTKKKTKKN*
BS11331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-PA | 532 | CG4302-PA | 1..532 | 1..532 | 2764 | 100 | Plus |
CG6475-PD | 526 | CG6475-PD | 2..524 | 9..531 | 1801 | 64.2 | Plus |
CG15661-PB | 530 | CG15661-PB | 10..515 | 11..515 | 1449 | 53.4 | Plus |
CG15661-PA | 530 | CG15661-PA | 10..515 | 11..515 | 1449 | 53.4 | Plus |
CG10178-PB | 530 | CG10178-PB | 13..512 | 9..519 | 1005 | 40.4 | Plus |