Clone BS11331 Report

Search the DGRC for BS11331

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG4302-RA
Protein status:BS11331.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11331.3prime Sequence

914 bp (851 high quality bases) assembled on 2006-04-18

> BS11331.3prime
ATGGTCTAGAAAGCTTCTAATTCTTCTTGGTCTTCTTCTTCGTCGGAGTG
CTCTTCGGCTTGGAGCTCCTGCGGCAGATCAGGATTAGAACTACGATTGG
CAACAGGATCACAGCGAGACCTAGACCCACAATGTCCAGTAGGTAGAACT
GGTACCAGGGTAGATGTACACCAGCGGCCACCAGATGAGGAGCACCTCGG
TGCTCGATCACATAGTTGATCCAATATATGGCCGTATCCATGGCACCGAG
TGGTCGATCGCGGAATATCCGGGAGGCCTTCTTAATGTTATTCCTATACT
TTGGATTCTCAATCAGTTCCATCAGCAGACCTCGCAACTCCTCCACCGTG
ACTTTCCGGTAATCCAGTCCCAGTGCATATTCTGCACTCTTACCCTGGTT
AATGTTCTGATGCTGATCACAGTAGACTGGCATTCCCAATATGGGAACAC
CATTGTACACCGCCTCCTGGGTGCCGAAGAGTCCTCCATGGGCAATGAAA
ACCTTGACATTCGGGTGCGCCAGAATGTCGCCCTGAGGTAACCAACTTTG
CACCTTAACGTTAGCCGGCAAATTGGGCAGAGATTCATCTTCGAATTTCC
AGAGAACGCGTTGCTTCAGACTGCCAAAGACTTCCAGGAATACTTTGAGC
TTCTCAGGCGGCAAGTCGGCACTTCTCACCTGGGAACCCAAGCTAAAGTA
AATGGCACCATGTGTGGCTCCGTCCAGGAATTTTTGTAGATGCTCCGGTA
GTGCCTTCGGTGGTTGAATGTGCAAACCGCCCACTGGGATCATATTATAT
GCCATCGGTCTCGAAGATGCCAGTGGCATGTAGCTGTTCAACAGAATGGC
TGAGATATTACGTTCGAGTTCTTTGATGGTCGGTACTCTGTCGAGTAGCT
TGGAGAAGTGCTTC

BS11331.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-PA 1599 CG4302-RA 702..1599 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-RA 1754 CG4302-RA 769..1668 914..15 4500 100 Minus
CG6475-RD 1683 CG6475-RD 765..1213 847..399 460 74.3 Minus
CG6475-RD 1683 CG6475-RD 1331..1477 281..135 255 78.2 Minus
CG15661-RB 1899 CG15661-RB 1237..1427 601..411 215 75.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21212966..21213639 15..688 3370 100 Plus
2R 25286936 2R 21213704..21213932 686..914 1145 100 Plus
3R 32079331 3R 21398251..21398525 399..673 370 75.6 Plus
3R 32079331 3R 21397987..21398133 135..281 255 78.2 Plus
2R 25286936 2R 21215971..21216093 413..535 195 77.2 Plus
Blast to na_te.dros performed on 2015-02-12 12:55:20 has no hits.

BS11331.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:45 Download gff for BS11331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-PA 702..1599 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:07 Download gff for BS11331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-PA 702..1599 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:37 Download gff for BS11331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 769..1668 15..914 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:55 Download gff for BS11331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 769..1668 15..914 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:55 Download gff for BS11331.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21212966..21213638 15..687 100 <- Plus
2R 21213706..21213932 688..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:37 Download gff for BS11331.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17100471..17101143 15..687 100 <- Plus
arm_2R 17101211..17101437 688..914 100   Plus

BS11331.5prime Sequence

872 bp (819 high quality bases) assembled on 2006-04-18

> BS11331.5prime
GAAGTTATCAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCC
TAAGTCTGGTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATC
TTGGCAGCATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGC
CATCATACGGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTC
CGTTTTCCTTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTG
ATTCCTCAATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAA
CACCGTTTTGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGG
TCAATGTGATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAG
ATTCAGGCAGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCT
GCTGGCGGAGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGT
ACCAGATCCCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTT
AGTCAGCTATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTA
TATGCCCTATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGG
CCATGAGTGCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGT
CAGGATGCGGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACC
GACCATCAAAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCT
ACATGCCACTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTG
GGCGGTTTGCACATTCAACACC

BS11331.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-PA 1599 CG4302-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-RA 1754 CG4302-RA 68..920 17..869 4265 100 Plus
CG6475-RD 1683 CG6475-RD 81..207 101..228 225 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21213781..21214371 869..279 2955 100 Minus
2R 25286936 2R 21214427..21214686 278..19 1300 100 Minus
3R 32079331 3R 21399433..21399554 222..101 220 78.7 Minus
Blast to na_te.dros performed 2015-02-10 07:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 726..808 125..43 135 65.5 Minus

BS11331.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:46 Download gff for BS11331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-PA 1..857 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:08 Download gff for BS11331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-PA 1..857 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:25 Download gff for BS11331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 57..924 4..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:24 Download gff for BS11331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 57..924 4..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:24 Download gff for BS11331.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21213777..21214371 279..872 99 <- Minus
2R 21214427..21214695 9..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:25 Download gff for BS11331.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17101282..17101876 279..872 99 <- Minus
arm_2R 17101932..17102200 9..278 98   Minus

BS11331.complete Sequence

1631 bp assembled on 2006-11-01

GenBank Submission: FJ636825

> BS11331.complete
GAAGTTATCAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCC
TAAGTCTGGTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATC
TTGGCAGCATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGC
CATCATACGGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTC
CGTTTTCCTTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTG
ATTCCTCAATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAA
CACCGTTTTGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGG
TCAATGTGATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAG
ATTCAGGCAGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCT
GCTGGCGGAGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGT
ACCAGATCCCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTT
AGTCAGCTATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTA
TATGCCCTATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGG
CCATGAGTGCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGT
CAGGATGCGGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACC
GACCATCAAAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCT
ACATGCCACTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTG
GGCGGTTTGCACATTCAACCACCGAAGGCACTACCGGAGCATCTACAAAA
ATTCCTGGACGGAGCCACACATGGTGCCATTTACTTTAGCTTGGGTTCCC
AGGTGAGAAGTGCCGACTTGCCGCCTGAGAAGCTCAAAGTATTCCTGGAA
GTCTTTGGCAGTCTGAAGCAACGCGTTCTCTGGAAATTCGAAGATGAATC
TCTGCCCAATTTGCCGGCTAACGTTAAGGTGCAAAGTTGGTTACCTCAGG
GCGACATTCTGGCGCACCCGAATGTCAAGGTTTTCATTGCCCATGGAGGA
CTCTTCGGCACCCAGGAGGCGGTGTACAATGGTGTTCCCATATTGGGAAT
GCCAGTCTACTGTGATCAGCATCAGAACATTAACCAGGGTAAGAGTGCAG
AATATGCACTGGGACTGGATTACCGGAAAGTCACGGTGGAGGAGTTGCGA
GGTCTGCTGATGGAACTGATTGAGAATCCAAAGTATAGGAATAACATTAA
GAAGGCCTCCCGGATATTCCGCGATCGACCACTCGGTGCCATGGATACGG
CCATATATTGGATCAACTATGTGATCGAGCACCGAGGTGCTCCTCATCTG
GTGGCCGCTGGTGTACATCTACCCTGGTACCAGTTCTACCTACTGGACAT
TGTGGGTCTAGGTCTCGCTGTGATCCTGTTGCCAATCGTAGTTCTAATCC
TGATCTGCCGCAGGAGCTCCAAGCCGAAGAGCACTCCGACGAAGAAGAAG
ACCAAGAAGAATTAGAAGCTTTCTAGACCAT

BS11331.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-RA 1599 CG4302-PA 1..1599 17..1615 7995 100 Plus
CG6475-RD 1581 CG6475-PD 748..1196 785..1233 460 73.5 Plus
CG6475-RD 1581 CG6475-PD 1314..1460 1351..1497 255 78.2 Plus
CG6475-RD 1581 CG6475-PD 64..185 101..222 220 78.7 Plus
CG15661-RB 1593 CG15661-PB 1081..1205 1097..1221 205 77.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-RA 1754 CG4302-RA 68..1668 17..1617 8005 100 Plus
CG6475-RD 1683 CG6475-RD 765..1213 785..1233 460 73.5 Plus
CG6475-RD 1683 CG6475-RD 1331..1477 1351..1497 255 78.2 Plus
CG6475-RD 1683 CG6475-RD 81..202 101..222 220 78.7 Plus
CG15661-RB 1899 CG15661-RB 1303..1427 1097..1221 205 77.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21212966..21213639 1617..944 3370 100 Minus
2R 25286936 2R 21213704..21214371 946..279 3340 100 Minus
2R 25286936 2R 21214427..21214686 278..19 1300 100 Minus
3R 32079331 3R 21398251..21398525 1233..959 370 75.6 Minus
3R 32079331 3R 21397987..21398133 1497..1351 255 78.2 Minus
3R 32079331 3R 21399433..21399554 222..101 220 78.7 Minus
2R 25286936 2R 21215971..21216093 1219..1097 195 77.2 Minus
Blast to na_te.dros performed 2014-11-26 21:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 726..808 125..43 135 65.5 Minus

BS11331.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:40 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 1..1599 17..1615 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:55 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 53..1664 4..1617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:56 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 68..1666 17..1615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:40 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 53..1664 4..1617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:49 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
CG4302-RA 68..1666 17..1615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:49 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21212968..21213638 945..1615 100 <- Minus
2R 21213706..21214371 279..944 100 <- Minus
2R 21214427..21214687 17..278 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:56 Download gff for BS11331.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17100473..17101143 945..1615 100 <- Minus
arm_2R 17101211..17101876 279..944 100 <- Minus
arm_2R 17101932..17102192 17..278 99   Minus

BS11331.pep Sequence

Translation from 16 to 1614

> BS11331.pep
MSLKSALHIFLLSLVALQQLELGTGSRILAAFFFPGKSHFMMTNAIIREL
VKQGHEVTFITPFSLAKEKLGSNYKEIVIPQYDFWPEIKEMTNKNTVLEM
TDLPTFAFLRMVNVMGIHTTDFALEQPEIQAVINEKNKIGKYDLLLAEQF
FNEGALILGHLYQIPTITISTFGNANHLSQLFGVVSPWSYVPHAYMPYTD
RMTLWERIGNVAMSAAEDLVREFSYYPGQDAVLKKHFSKLLDRVPTIKEL
ERNISAILLNSYMPLASSRPMAYNMIPVGGLHIQPPKALPEHLQKFLDGA
THGAIYFSLGSQVRSADLPPEKLKVFLEVFGSLKQRVLWKFEDESLPNLP
ANVKVQSWLPQGDILAHPNVKVFIAHGGLFGTQEAVYNGVPILGMPVYCD
QHQNINQGKSAEYALGLDYRKVTVEELRGLLMELIENPKYRNNIKKASRI
FRDRPLGAMDTAIYWINYVIEHRGAPHLVAAGVHLPWYQFYLLDIVGLGL
AVILLPIVVLILICRRSSKPKSTPTKKKTKKN*

BS11331.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4302-PA 532 CG4302-PA 1..532 1..532 2764 100 Plus
CG6475-PD 526 CG6475-PD 2..524 9..531 1801 64.2 Plus
CG15661-PB 530 CG15661-PB 10..515 11..515 1449 53.4 Plus
CG15661-PA 530 CG15661-PA 10..515 11..515 1449 53.4 Plus
CG10178-PB 530 CG10178-PB 13..512 9..519 1005 40.4 Plus