Clone Sequence Records
BS11332.3prime Sequence
896 bp (885 high quality bases) assembled on 2006-04-18
> BS11332.3prime
ATGGTCTAGAAAGCTTCTAGTGATCCGCGTAGTCGGGTTCCGGAATCTGC
GGGTAGATCTGTACTTGAAGTTGTGGCTTGCGTGGCGGCGGTGGTGGCTT
AGTCACCATGCTGGTGTACGACCAAGGCATCTGGTTGCGCAGCTCTTCGC
TAACGCGGGGATTTACGGGAGCAGGATATATCTCGCTGTAGCGATTGTTT
AGTGGCGACGTCACCGCCAGTTGTTGGACAGCCGGCGAAGGAGCACGTGG
AGTTTGTGGCTCCGAAGGTGGATAGTTGAGGTGGTCGGGATGAGCCTCGG
TGGTGCGATAGGTGTTGATGTCAGGCTGCGGGGACACAACATCTCTCTGC
TGAGGAACTTGTGGTGGTAGCACCATCACCGGCGATTGCAAAGTGGTGCG
ATCTCCGGGTGCGAACTGCTGGGAGTTTGGACGCTGGGCACCCTGCTCCG
AGGGAATGAAAATGGGCAGCGGCTTGGGTCGGATCTGCTCCGGATATTGA
GGGCTCTCTTGCGGGGCCGAAGGCTGAATGGATTCCACTAGCGTGGCCTC
CACCACCGGCTGGACTAATGCCACCGCAGGCTGTGGTGTCGGCTGTCGGG
TGGGAGCCTGGCTCCTGCTCAAGGCGGCTGATTTCGCATTCTGCTCCGCC
ATGATTCCGGACAACGAGAGACAGAAGGTAACTCCAATGATGTTCAGCAG
CCAGATGATGGCTACGCGACTTGTGAGGCACAGTAGAAGAATCGATGGCG
TCGAGAAGTATACGCCGAAGGGCTCCATTAGAGTCCAGACATTACTAACA
ATTTCGCTATATGAGACTCCAATGTAATCAAGTGCATCTTTCATGGACGT
TGTATGACTTATGTCGATTCCATGATACACCGTGGCCACCACATCT
BS11332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-PB | 1314 | CG1246-RB | 435..1314 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-RD | 1840 | CG1246-RD | 843..1722 | 896..17 | 4400 | 100 | Minus |
CG1246-RC | 1674 | CG1246-RC | 677..1556 | 896..17 | 4400 | 100 | Minus |
CG1246-RE | 1527 | CG1246-RE | 530..1409 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2649256..2650087 | 848..17 | 4160 | 100 | Minus |
3L | 28110227 | 3L | 2649157..2649205 | 896..848 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:35:00 has no hits.
BS11332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:47 Download gff for
BS11332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-PB | 435..1314 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:10 Download gff for
BS11332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-PB | 435..1314 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:02:09 Download gff for
BS11332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RB | 652..1536 | 10..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:58 Download gff for
BS11332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RE | 530..1414 | 10..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:58 Download gff for
BS11332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2649157..2649205 | 848..896 | 100 | -> | Minus |
3L | 2649257..2650092 | 10..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:02:09 Download gff for
BS11332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2649157..2649205 | 848..896 | 100 | -> | Minus |
arm_3L | 2649257..2650092 | 10..847 | 99 | | Minus |
BS11332.5prime Sequence
903 bp (838 high quality bases) assembled on 2006-04-18
> BS11332.5prime
GAAGTTATCAGTCGACATGGCCGGCATGGGCACTGGATTTTCCAAGTGCT
TTATACTCTTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTG
GGCTTGTCCATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTAC
TGATTTCAGCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTG
CACAGGAGGAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTT
AGTTTGAACATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTT
CATCTTCATGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTT
CGGTGTTGGTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCC
GGAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCT
AGATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGT
CCATGAAAGATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTT
AGTAATGTCTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCC
ATCGATTCTTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGC
TGAACATCATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCG
GAGCAGAATGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCG
ACAGCCGACACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGG
CCACGCTAGTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAA
TATCCGGAGCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGA
GCA
BS11332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-PB | 1314 | CG1246-RB | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-RD | 1840 | CG1246-RD | 409..1295 | 17..903 | 4435 | 100 | Plus |
CG1246-RC | 1674 | CG1246-RC | 243..1129 | 17..903 | 4435 | 100 | Plus |
CG1246-RE | 1527 | CG1246-RE | 96..982 | 17..903 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2649256..2649660 | 499..903 | 2025 | 100 | Plus |
3L | 28110227 | 3L | 2648856..2649017 | 204..365 | 810 | 100 | Plus |
3L | 28110227 | 3L | 2649072..2649205 | 366..499 | 670 | 100 | Plus |
3L | 28110227 | 3L | 2648664..2648787 | 80..203 | 620 | 100 | Plus |
3L | 28110227 | 3L | 2648532..2648596 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:24:25 has no hits.
BS11332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:48 Download gff for
BS11332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-PB | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:11 Download gff for
BS11332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-PB | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:26 Download gff for
BS11332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RB | 211..1103 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:19 Download gff for
BS11332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RE | 89..981 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:19 Download gff for
BS11332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2648525..2648594 | 9..79 | 95 | -> | Plus |
3L | 2648664..2648787 | 80..203 | 100 | -> | Plus |
3L | 2648856..2649017 | 204..365 | 100 | -> | Plus |
3L | 2649072..2649205 | 366..499 | 100 | -> | Plus |
3L | 2649257..2649659 | 500..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:26 Download gff for
BS11332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2648525..2648594 | 9..79 | 95 | -> | Plus |
arm_3L | 2648664..2648787 | 80..203 | 100 | -> | Plus |
arm_3L | 2648856..2649017 | 204..365 | 100 | -> | Plus |
arm_3L | 2649072..2649205 | 366..499 | 100 | -> | Plus |
arm_3L | 2649257..2649659 | 500..902 | 100 | | Plus |
BS11332.complete Sequence
1346 bp assembled on 2006-11-01
GenBank Submission: FJ636826
> BS11332.complete
GAAGTTATCAGTCGACATGGCCGGCATGGGCACTGGATTTTCCAAGTGCT
TTATACTCTTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTG
GGCTTGTCCATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTAC
TGATTTCAGCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTG
CACAGGAGGAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTT
AGTTTGAACATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTT
CATCTTCATGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTT
CGGTGTTGGTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCC
GGAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCT
AGATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGT
CCATGAAAGATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTT
AGTAATGTCTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCC
ATCGATTCTTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGC
TGAACATCATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCG
GAGCAGAATGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCG
ACAGCCGACACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGG
CCACGCTAGTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAA
TATCCGGAGCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGA
GCAGGGTGCCCAGCGTCCAAACTCCCAGCAGTTCGCACCCGGAGATCGCA
CCACTTTGCAATCGCCGGTGATGGTGCTACCACCACAAGTTCCTCAGCAG
AGAGATGTTGTGTCCCCGCAGCCTGACATCAACACCTATCGCACCACCGA
GGCTCATCCCGACCACCTCAACTATCCACCTTCGGAGCCACAAACTCCAC
GTGCTCCTTCGCCGGCTGTCCAACAACTGGCGGTGACGTCGCCACTAAAC
AATCGCTACAGCGAGATATATCCTGCTCCCGTAAATCCCCGCGTTAGCGA
AGAGCTGCGCAACCAGATGCCTTGGTCGTACACCAGCATGGTGACTAAGC
CACCACCGCCGCCACGCAAGCCACAACTTCAAGTACAGATCTACCCGCAG
ATTCCGGAACCCGACTACGCGGATCACTAGAAGCTTTCTAGACCAT
BS11332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-RD | 1314 | CG1246-PD | 1..1314 | 17..1330 | 6570 | 100 | Plus |
CG1246-RC | 1314 | CG1246-PC | 1..1314 | 17..1330 | 6570 | 100 | Plus |
CG1246-RE | 1314 | CG1246-PE | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-RD | 1840 | CG1246-RD | 409..1722 | 17..1330 | 6570 | 100 | Plus |
CG1246-RC | 1674 | CG1246-RC | 243..1556 | 17..1330 | 6570 | 100 | Plus |
CG1246-RE | 1527 | CG1246-RE | 96..1409 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2649256..2650087 | 499..1330 | 4160 | 100 | Plus |
3L | 28110227 | 3L | 2648856..2649017 | 204..365 | 810 | 100 | Plus |
3L | 28110227 | 3L | 2649072..2649205 | 366..499 | 670 | 100 | Plus |
3L | 28110227 | 3L | 2648664..2648787 | 80..203 | 620 | 100 | Plus |
3L | 28110227 | 3L | 2648532..2648596 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:45:52 has no hits.
BS11332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:43 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RB | 1..1314 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:59 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RB | 209..1534 | 9..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:22 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RB | 218..1531 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:43 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RB | 209..1534 | 9..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:24 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1246-RE | 96..1409 | 17..1330 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:24 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2648856..2649017 | 204..365 | 100 | -> | Plus |
3L | 2649072..2649205 | 366..499 | 100 | -> | Plus |
3L | 2649257..2650087 | 500..1330 | 100 | | Plus |
3L | 2648532..2648594 | 17..79 | 100 | -> | Plus |
3L | 2648664..2648787 | 80..203 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:22 Download gff for
BS11332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2648856..2649017 | 204..365 | 100 | -> | Plus |
arm_3L | 2649072..2649205 | 366..499 | 100 | -> | Plus |
arm_3L | 2648532..2648594 | 17..79 | 100 | -> | Plus |
arm_3L | 2648664..2648787 | 80..203 | 100 | -> | Plus |
arm_3L | 2649257..2650087 | 500..1330 | 100 | | Plus |
BS11332.pep Sequence
Translation from 16 to 1329
> BS11332.pep
MAGMGTGFSKCFILFMAIVILVQGVAYLGLSIWGITFRDCPDGVTDFSEN
PFKYAMELIYFAQEECGEPVLKVADEQFSLNIDWQTSYAITNREFIFMIT
YAVISGVWVATSVLVITTLCNRTTKLISGVVYWPWFLSVLAGSILDVVAT
VYHGIDISHTTSMKDALDYIGVSYSEIVSNVWTLMEPFGVYFSTPSILLL
CLTSRVAIIWLLNIIGVTFCLSLSGIMAEQNAKSAALSRSQAPTRQPTPQ
PAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQR
PNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDH
LNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIYPAPVNPRVSEELRNQ
MPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEPDYADH*
BS11332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1246-PD | 437 | CG1246-PD | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PC | 437 | CG1246-PC | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PE | 437 | CG1246-PE | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PB | 437 | CG1246-PB | 1..437 | 1..437 | 2295 | 100 | Plus |