Clone BS11332 Report

Search the DGRC for BS11332

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG1246-RB
Protein status:BS11332.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11332.3prime Sequence

896 bp (885 high quality bases) assembled on 2006-04-18

> BS11332.3prime
ATGGTCTAGAAAGCTTCTAGTGATCCGCGTAGTCGGGTTCCGGAATCTGC
GGGTAGATCTGTACTTGAAGTTGTGGCTTGCGTGGCGGCGGTGGTGGCTT
AGTCACCATGCTGGTGTACGACCAAGGCATCTGGTTGCGCAGCTCTTCGC
TAACGCGGGGATTTACGGGAGCAGGATATATCTCGCTGTAGCGATTGTTT
AGTGGCGACGTCACCGCCAGTTGTTGGACAGCCGGCGAAGGAGCACGTGG
AGTTTGTGGCTCCGAAGGTGGATAGTTGAGGTGGTCGGGATGAGCCTCGG
TGGTGCGATAGGTGTTGATGTCAGGCTGCGGGGACACAACATCTCTCTGC
TGAGGAACTTGTGGTGGTAGCACCATCACCGGCGATTGCAAAGTGGTGCG
ATCTCCGGGTGCGAACTGCTGGGAGTTTGGACGCTGGGCACCCTGCTCCG
AGGGAATGAAAATGGGCAGCGGCTTGGGTCGGATCTGCTCCGGATATTGA
GGGCTCTCTTGCGGGGCCGAAGGCTGAATGGATTCCACTAGCGTGGCCTC
CACCACCGGCTGGACTAATGCCACCGCAGGCTGTGGTGTCGGCTGTCGGG
TGGGAGCCTGGCTCCTGCTCAAGGCGGCTGATTTCGCATTCTGCTCCGCC
ATGATTCCGGACAACGAGAGACAGAAGGTAACTCCAATGATGTTCAGCAG
CCAGATGATGGCTACGCGACTTGTGAGGCACAGTAGAAGAATCGATGGCG
TCGAGAAGTATACGCCGAAGGGCTCCATTAGAGTCCAGACATTACTAACA
ATTTCGCTATATGAGACTCCAATGTAATCAAGTGCATCTTTCATGGACGT
TGTATGACTTATGTCGATTCCATGATACACCGTGGCCACCACATCT

BS11332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-PB 1314 CG1246-RB 435..1314 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-RD 1840 CG1246-RD 843..1722 896..17 4400 100 Minus
CG1246-RC 1674 CG1246-RC 677..1556 896..17 4400 100 Minus
CG1246-RE 1527 CG1246-RE 530..1409 896..17 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2649256..2650087 848..17 4160 100 Minus
3L 28110227 3L 2649157..2649205 896..848 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:35:00 has no hits.

BS11332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:47 Download gff for BS11332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-PB 435..1314 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:10 Download gff for BS11332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-PB 435..1314 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:02:09 Download gff for BS11332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 652..1536 10..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:58 Download gff for BS11332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-RE 530..1414 10..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:58 Download gff for BS11332.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2649157..2649205 848..896 100 -> Minus
3L 2649257..2650092 10..847 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:02:09 Download gff for BS11332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2649157..2649205 848..896 100 -> Minus
arm_3L 2649257..2650092 10..847 99   Minus

BS11332.5prime Sequence

903 bp (838 high quality bases) assembled on 2006-04-18

> BS11332.5prime
GAAGTTATCAGTCGACATGGCCGGCATGGGCACTGGATTTTCCAAGTGCT
TTATACTCTTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTG
GGCTTGTCCATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTAC
TGATTTCAGCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTG
CACAGGAGGAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTT
AGTTTGAACATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTT
CATCTTCATGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTT
CGGTGTTGGTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCC
GGAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCT
AGATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGT
CCATGAAAGATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTT
AGTAATGTCTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCC
ATCGATTCTTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGC
TGAACATCATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCG
GAGCAGAATGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCG
ACAGCCGACACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGG
CCACGCTAGTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAA
TATCCGGAGCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGA
GCA

BS11332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-PB 1314 CG1246-RB 1..887 17..903 4435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-RD 1840 CG1246-RD 409..1295 17..903 4435 100 Plus
CG1246-RC 1674 CG1246-RC 243..1129 17..903 4435 100 Plus
CG1246-RE 1527 CG1246-RE 96..982 17..903 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2649256..2649660 499..903 2025 100 Plus
3L 28110227 3L 2648856..2649017 204..365 810 100 Plus
3L 28110227 3L 2649072..2649205 366..499 670 100 Plus
3L 28110227 3L 2648664..2648787 80..203 620 100 Plus
3L 28110227 3L 2648532..2648596 17..81 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:24:25 has no hits.

BS11332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:48 Download gff for BS11332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-PB 1..886 17..902 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:11 Download gff for BS11332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-PB 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:26 Download gff for BS11332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 211..1103 9..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:19 Download gff for BS11332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1246-RE 89..981 9..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:19 Download gff for BS11332.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2648525..2648594 9..79 95 -> Plus
3L 2648664..2648787 80..203 100 -> Plus
3L 2648856..2649017 204..365 100 -> Plus
3L 2649072..2649205 366..499 100 -> Plus
3L 2649257..2649659 500..902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:26 Download gff for BS11332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2648525..2648594 9..79 95 -> Plus
arm_3L 2648664..2648787 80..203 100 -> Plus
arm_3L 2648856..2649017 204..365 100 -> Plus
arm_3L 2649072..2649205 366..499 100 -> Plus
arm_3L 2649257..2649659 500..902 100   Plus

BS11332.complete Sequence

1346 bp assembled on 2006-11-01

GenBank Submission: FJ636826

> BS11332.complete
GAAGTTATCAGTCGACATGGCCGGCATGGGCACTGGATTTTCCAAGTGCT
TTATACTCTTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTG
GGCTTGTCCATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTAC
TGATTTCAGCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTG
CACAGGAGGAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTT
AGTTTGAACATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTT
CATCTTCATGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTT
CGGTGTTGGTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCC
GGAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCT
AGATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGT
CCATGAAAGATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTT
AGTAATGTCTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCC
ATCGATTCTTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGC
TGAACATCATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCG
GAGCAGAATGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCG
ACAGCCGACACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGG
CCACGCTAGTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAA
TATCCGGAGCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGA
GCAGGGTGCCCAGCGTCCAAACTCCCAGCAGTTCGCACCCGGAGATCGCA
CCACTTTGCAATCGCCGGTGATGGTGCTACCACCACAAGTTCCTCAGCAG
AGAGATGTTGTGTCCCCGCAGCCTGACATCAACACCTATCGCACCACCGA
GGCTCATCCCGACCACCTCAACTATCCACCTTCGGAGCCACAAACTCCAC
GTGCTCCTTCGCCGGCTGTCCAACAACTGGCGGTGACGTCGCCACTAAAC
AATCGCTACAGCGAGATATATCCTGCTCCCGTAAATCCCCGCGTTAGCGA
AGAGCTGCGCAACCAGATGCCTTGGTCGTACACCAGCATGGTGACTAAGC
CACCACCGCCGCCACGCAAGCCACAACTTCAAGTACAGATCTACCCGCAG
ATTCCGGAACCCGACTACGCGGATCACTAGAAGCTTTCTAGACCAT

BS11332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-RD 1314 CG1246-PD 1..1314 17..1330 6570 100 Plus
CG1246-RC 1314 CG1246-PC 1..1314 17..1330 6570 100 Plus
CG1246-RE 1314 CG1246-PE 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-RD 1840 CG1246-RD 409..1722 17..1330 6570 100 Plus
CG1246-RC 1674 CG1246-RC 243..1556 17..1330 6570 100 Plus
CG1246-RE 1527 CG1246-RE 96..1409 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2649256..2650087 499..1330 4160 100 Plus
3L 28110227 3L 2648856..2649017 204..365 810 100 Plus
3L 28110227 3L 2649072..2649205 366..499 670 100 Plus
3L 28110227 3L 2648664..2648787 80..203 620 100 Plus
3L 28110227 3L 2648532..2648596 17..81 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:45:52 has no hits.

BS11332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:43 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1314 17..1330 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:59 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 209..1534 9..1337 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:22 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 218..1531 17..1330 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:43 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 209..1534 9..1337 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:24 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RE 96..1409 17..1330 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:24 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2648856..2649017 204..365 100 -> Plus
3L 2649072..2649205 366..499 100 -> Plus
3L 2649257..2650087 500..1330 100   Plus
3L 2648532..2648594 17..79 100 -> Plus
3L 2648664..2648787 80..203 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:22 Download gff for BS11332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2648856..2649017 204..365 100 -> Plus
arm_3L 2649072..2649205 366..499 100 -> Plus
arm_3L 2648532..2648594 17..79 100 -> Plus
arm_3L 2648664..2648787 80..203 100 -> Plus
arm_3L 2649257..2650087 500..1330 100   Plus

BS11332.pep Sequence

Translation from 16 to 1329

> BS11332.pep
MAGMGTGFSKCFILFMAIVILVQGVAYLGLSIWGITFRDCPDGVTDFSEN
PFKYAMELIYFAQEECGEPVLKVADEQFSLNIDWQTSYAITNREFIFMIT
YAVISGVWVATSVLVITTLCNRTTKLISGVVYWPWFLSVLAGSILDVVAT
VYHGIDISHTTSMKDALDYIGVSYSEIVSNVWTLMEPFGVYFSTPSILLL
CLTSRVAIIWLLNIIGVTFCLSLSGIMAEQNAKSAALSRSQAPTRQPTPQ
PAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQR
PNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDH
LNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIYPAPVNPRVSEELRNQ
MPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEPDYADH*

BS11332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-PD 437 CG1246-PD 1..437 1..437 2295 100 Plus
CG1246-PC 437 CG1246-PC 1..437 1..437 2295 100 Plus
CG1246-PE 437 CG1246-PE 1..437 1..437 2295 100 Plus
CG1246-PB 437 CG1246-PB 1..437 1..437 2295 100 Plus