Clone Sequence Records
BS11336.3prime Sequence
582 bp (581 high quality bases) assembled on 2006-04-18
> BS11336.3prime
ATGGTCTAGAAAGCTTTCACCGTTGGTTGGCCATATTCTGGTGTATAGCG
TTGTTGATCATGGTGTTCCGCATGAATAGGTAGTGATCGTCCATATTGCA
CTGCAGCTCCATCATGTCCTCGTGCTCCGCCTGAAATCGGATGGCCGCGT
TTGTGAAAGCCAACGAGCTTCGCACGAAGTTTTGCAAATTGGGTCCCTGA
TCTAGGTAACGCTGCTGCTCCTTGTTTGGCTTGAAGCTAACCTTGCGATT
GTCCGTGTCCAGTGCCGCATGCATTACAAAGTCGAAGAACTTTTGCTGCT
CCTTCTGGGCGCGCTCCTTGTACTGCTGCACCTCGTCCTCCTGACAGCTA
GGATCCCAGATATCGTCCAGGTCAATGTTAAACAAAGTGCTTGCTTCATA
GCGACGCGGTTTCAAAGTGGCCTCCAGTTGGGCCGGCACGTCCTTGAGAT
CGATGTCGGAGAGATCACCGCTCGATAGATCGACGGCACTCGTGTTGCCC
ACGTATTCCAGTACGTCACTGCGGCGTACGAATTTCATTAATTTTTCTGG
ACTTTCGGCTGGCTCCATGTCGACTGATAACT
BS11336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1558-PA | 552 | l(1)G0237-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 1002 | CG1558-RA | 45..596 | 568..17 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11571789..11572132 | 17..360 | 1720 | 100 | Plus |
| X | 23542271 | X | 11572191..11572398 | 361..568 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 04:02:02 has no hits.
BS11336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:56 Download gff for
BS11336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:21 Download gff for
BS11336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:00:34 Download gff for
BS11336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 12..572 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:30:36 Download gff for
BS11336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 12..572 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:30:36 Download gff for
BS11336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11571785..11572132 | 12..360 | 99 | <- | Plus |
| X | 11572191..11572400 | 361..572 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:00:34 Download gff for
BS11336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11465818..11466165 | 12..360 | 99 | <- | Plus |
| arm_X | 11466224..11466433 | 361..572 | 99 | | Plus |
BS11336.5prime Sequence
582 bp (581 high quality bases) assembled on 2006-04-18
> BS11336.5prime
GAAGTTATCAGTCGACATGGAGCCAGCCGAAAGTCCAGAAAAATTAATGA
AATTCGTACGCCGCAGTGACGTACTGGAATACGTGGGCAACACGAGTGCC
GTCGATCTATCGAGCGGTGATCTCTCCGACATCGATCTCAAGGACGTGCC
GGCCCAACTGGAGGCCACTTTGAAACCGCGTCGCTATGAAGCAAGCACTT
TGTTTAACATTGACCTGGACGATATCTGGGATCCTAGCTGTCAGGAGGAC
GAGGTGCAGCAGTACAAGGAGCGCGCCCAGAAGGAGCAGCAAAAGTTCTT
CGACTTTGTAATGCATGCGGCACTGGACACGGACAATCGCAAGGTTAGCT
TCAAGCCAAACAAGGAGCAGCAGCGTTACCTAGATCAGGGACCCAATTTG
CAAAACTTCGTGCGAAGCTCGTTGGCTTTCACAAACGCGGCCATCCGATT
TCAGGCGGAGCACGAGGACATGATGGAGCTGCAGTGCAATATGGACGATC
ACTACCTATTCATGCGGAACACCATGATCAACAACGCTATACACCAGAAT
ATGGCCAACCAACGGTGAAAGCTTTCTAGACC
BS11336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1558-PA | 552 | l(1)G0237-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 1002 | CG1558-RA | 45..596 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11571789..11572132 | 568..225 | 1720 | 100 | Minus |
| X | 23542271 | X | 11572191..11572398 | 224..17 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:25:19 has no hits.
BS11336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:05:57 Download gff for
BS11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:22 Download gff for
BS11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:08:47 Download gff for
BS11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:37 Download gff for
BS11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:37 Download gff for
BS11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11571785..11572132 | 225..573 | 99 | <- | Minus |
| X | 11572191..11572400 | 13..224 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:08:47 Download gff for
BS11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11465818..11466165 | 225..573 | 99 | <- | Minus |
| arm_X | 11466224..11466433 | 13..224 | 99 | | Minus |
BS11336.complete Sequence
584 bp assembled on 2006-11-01
GenBank Submission: FJ636828
> BS11336.complete
GAAGTTATCAGTCGACATGGAGCCAGCCGAAAGTCCAGAAAAATTAATGA
AATTCGTACGCCGCAGTGACGTACTGGAATACGTGGGCAACACGAGTGCC
GTCGATCTATCGAGCGGTGATCTCTCCGACATCGATCTCAAGGACGTGCC
GGCCCAACTGGAGGCCACTTTGAAACCGCGTCGCTATGAAGCAAGCACTT
TGTTTAACATTGACCTGGACGATATCTGGGATCCTAGCTGTCAGGAGGAC
GAGGTGCAGCAGTACAAGGAGCGCGCCCAGAAGGAGCAGCAAAAGTTCTT
CGACTTTGTAATGCATGCGGCACTGGACACGGACAATCGCAAGGTTAGCT
TCAAGCCAAACAAGGAGCAGCAGCGTTACCTAGATCAGGGACCCAATTTG
CAAAACTTCGTGCGAAGCTCGTTGGCTTTCACAAACGCGGCCATCCGATT
TCAGGCGGAGCACGAGGACATGATGGAGCTGCAGTGCAATATGGACGATC
ACTACCTATTCATGCGGAACACCATGATCAACAACGCTATACACCAGAAT
ATGGCCAACCAACGGTGAAAGCTTTCTAGACCAT
BS11336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 552 | CG1558-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 1002 | CG1558-RA | 45..596 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11571789..11572132 | 568..225 | 1720 | 100 | Minus |
| X | 23542271 | X | 11572191..11572398 | 224..17 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:41:35 has no hits.
BS11336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:31 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:43 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:53 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 45..595 | 17..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:31 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:27 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 45..595 | 17..567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:27 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11571790..11572132 | 225..567 | 100 | <- | Minus |
| X | 11572191..11572398 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:53 Download gff for
BS11336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11465823..11466165 | 225..567 | 100 | <- | Minus |
| arm_X | 11466224..11466431 | 17..224 | 100 | | Minus |
BS11336.pep Sequence
Translation from 16 to 567
> BS11336.pep
MEPAESPEKLMKFVRRSDVLEYVGNTSAVDLSSGDLSDIDLKDVPAQLEA
TLKPRRYEASTLFNIDLDDIWDPSCQEDEVQQYKERAQKEQQKFFDFVMH
AALDTDNRKVSFKPNKEQQRYLDQGPNLQNFVRSSLAFTNAAIRFQAEHE
DMMELQCNMDDHYLFMRNTMINNAIHQNMANQR*
BS11336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-PA | 183 | CG1558-PA | 1..183 | 1..183 | 954 | 100 | Plus |
