Clone BS11338 Report

Search the DGRC for BS11338

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptphm-RA
Protein status:BS11338.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11338.3prime Sequence

872 bp (795 high quality bases) assembled on 2006-04-18

> BS11338.3prime
ATGGTCTAGAAAGCTTCTAATCCTGCACCACAGCTCCGTCGGGTGCATGG
CGCATCTCCACCGCCGGCAGCTTGGTGAATCGCAGCATGTGCGGAGTGGG
GGTCAGGGTGATGCCGCTCTCACCCGCCATGTCCACCTCAGTGCCCGAGG
GCAGTTCCAAGTGGAAGCGCCTGAGGATGCGACCCGTAAAGAGCGTGAGT
ATCATGCGAGCCATCTCTTCGCCGGGACACATTCGATAGCCGGACGAGAA
TGGGATGAACTGTGGCGGCGCCTGGTAGGCTCCATCGGCGGTCAAGAAGC
GCTCCGGACGGAACTCCTCCGGTTCCGGGAAGGCCACTGGGTCCATGTGG
ATAGCCCACTCCGAGCAAACGATCATCGAACCACCCTTGATAAAATAATC
GCCCACGACGAAGTTCTCTTTGCATCCGTGCGGAATGCCCAGTGGGACAA
CGCTGCGTATGCGCATCGTCTCGGAAATGCAAGCCCTTAGGTAGGCCAGC
GGCTCCAGTTCCTCCAAAGTGGGAGACGGACCCAGCGGCAGGAGGAGCTC
ATGCAGGCGCCGCTGGCAGCGTTGTTCGCGGGCCAAGTAGAGCAGGAACC
AGCGCAGGGTGGCCAGCGAGGTGTCCACCCCGGCTCCAAAGAGATCGGCC
AGCAGATGGCGCAGCTGGTCGTCGCAGTAGAGCTGCGAATCCGTGTCTCG
AACGGCTAGGAAGTGCTCCAGGATGCACTCCGGCTCGTACGTGTCCTCCT
CATCGCTCTCCTCGTCATCCTCGTCTGCCTCACTCTGCTCCTGGCTTGGA
TCCGCTTCCTTTGACTGCCTGAGCTGCTCCTTCTCTAGCTGCCTTTGCAG
CCGCTTCTGCTCCTGGAGCTCC

BS11338.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6578-PA 1725 phm-RA 870..1725 872..17 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 2203 CG6578-RB 1066..1921 872..17 4280 100 Minus
phm-RA 1997 CG6578-RA 1066..1921 872..17 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18687296..18688151 872..17 4280 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:44:10 has no hits.

BS11338.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:00 Download gff for BS11338.3prime
Subject Subject Range Query Range Percent Splice Strand
phm-PA 870..1725 17..872 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:27 Download gff for BS11338.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6578-PA 870..1725 17..872 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:16:17 Download gff for BS11338.3prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 1066..1924 11..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:24 Download gff for BS11338.3prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 1066..1924 11..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:24 Download gff for BS11338.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18687296..18688154 11..872 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:16:17 Download gff for BS11338.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18581329..18582187 11..872 99   Minus

BS11338.5prime Sequence

943 bp (861 high quality bases) assembled on 2006-04-18

> BS11338.5prime
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCC
CTGGCTGCGTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGG
AGGGCAAGGCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGT
GGCCAGCGGCTGAAGGAGAAGCAGAAAGTGTTCAAGGAGCTCCAGGAGCA
GAAGCCGCTGCAAAGGCAGCTAGAGAAGGAGCAGCTCAGGCAG

BS11338.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6578-PA 1725 phm-RA 1..927 17..943 4585 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 2203 CG6578-RB 197..1123 17..943 4605 99.8 Plus
phm-RA 1997 CG6578-RA 197..1123 17..943 4605 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18686957..18687353 547..943 1955 99.5 Plus
X 23542271 X 18685962..18686344 17..399 1915 100 Plus
X 23542271 X 18686429..18686578 398..547 750 100 Plus
Blast to na_te.dros performed on 2015-02-10 07:09:27 has no hits.

BS11338.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:01 Download gff for BS11338.5prime
Subject Subject Range Query Range Percent Splice Strand
phm-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:29 Download gff for BS11338.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6578-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:29:20 Download gff for BS11338.5prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 193..1123 10..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:47:15 Download gff for BS11338.5prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 193..1123 10..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:47:15 Download gff for BS11338.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18685958..18686343 10..398 99 -> Plus
X 18686430..18686578 399..547 100 -> Plus
X 18686958..18687353 548..943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:29:20 Download gff for BS11338.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18579991..18580376 10..398 99 -> Plus
arm_X 18580463..18580611 399..547 100 -> Plus
arm_X 18580991..18581386 548..943 99   Plus

BS11338.complete Sequence

1757 bp assembled on 2007-10-26

GenBank Submission: FJ636829

> BS11338.complete
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCC
CTGGCTGCGTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGG
AGGGCAAGGCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGT
GGCCAGCGGCTGAAGGAGAAGCAGAAGGTGTTCAAGGAGCTCCAGGAGCA
GAAGCGGCTGCAAAGGCAGCTAGAGAAGGAGCAGCTCAGGCAGTCAAAGG
AAGCGGATCCAAGCCAGGAGCAGAGTGAGGCAGACGAGGATGACGAGGAG
AGCGATGAGGAGGACACGTACGAGCCGGAGTGCATCCTGGAGCACTTCCT
AGCCGTTCGAGACACGGATTCGCAGCTCTACTGCGACGACCAGCTGCGCC
ATCTGCTGGCCGATCTCTTTGGAGCCGGGGTGGACACCTCGCTGGCCACC
CTGCGCTGGTTCCTGCTCTACTTGGCCCGCGAACAACGCTGCCAGCGGCG
CCTGCATGAGCTCCTCCTGCCGCTGGGTCCGTCTCCCACTTTGGAGGAAC
TGGAGCCGCTGGCCTACCTAAGGGCTTGCATTTCCGAGACGATGCGCATA
CGCAGCGTTGTCCCACTGGGCATTCCGCACGGATGCAAAGAGAACTTCGT
CGTGGGCGATTATTTTATCAAGGGTGGTTCGATGATCGTTTGCTCGGAGT
GGGCTATCCACATGGACCCAGTGGCCTTCCCGGAACCGGAGGAGTTCCGT
CCGGAGCGCTTCTTGACCGCCGATGGAGCCTACCAGGCGCCGCCACAGTT
CATCCCATTCTCGTCCGGCTATCGAATGTGTCCCGGCGAAGAGATGGCTC
GCATGATACTCACGCTCTTTACGGGTCGCATCCTCAGGCGCTTCCACTTG
GAACTGCCCTCGGGCACTGAGGTGGACATGGCGGGTGAGAGCGGCATCAC
CCTGACCCCCACTCCGCACATGCTGCGATTCACCAAGCTGCCGGCGGTGG
AGATGCGCCATGCACCCGACGGAGCTGTGGTGCAGGATTAGAAGCTTTCT
AGACCAT

BS11338.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 1725 CG6578-PB 1..1725 17..1741 8625 100 Plus
phm-RA 1725 CG6578-PA 1..1725 17..1741 8625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 2203 CG6578-RB 197..1921 17..1741 8625 100 Plus
phm-RA 1997 CG6578-RA 197..1921 17..1741 8625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18686957..18688151 547..1741 5975 100 Plus
X 23542271 X 18685962..18686344 17..399 1915 100 Plus
X 23542271 X 18686429..18686578 398..547 750 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:34:56 has no hits.

BS11338.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:58 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 1..1725 17..1741 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:45 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 190..1921 10..1747 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:58 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 197..1921 17..1741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:15 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 194..1918 17..1741 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:33 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 197..1921 17..1741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:33 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
X 18685962..18686343 17..398 100 -> Plus
X 18686430..18686578 399..547 100 -> Plus
X 18686958..18688151 548..1741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:58 Download gff for BS11338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18579995..18580376 17..398 100 -> Plus
arm_X 18580463..18580611 399..547 100 -> Plus
arm_X 18580991..18582184 548..1741 100   Plus

BS11338.pep Sequence

Translation from 16 to 1740

> BS11338.pep
MSADIVDIGHTGWMPSVQSLSILLVPGALVLVILYLCERQCNDLMGAPPP
GPWGLPFLGYLPFLDARAPHKSLQKLAKRYGGIFELKMGRVPTVVLSDAA
LVRDFFRRDVMTGRAPLYLTHGIMGGFGIICAQEDIWRHARRETIDWLKA
LGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHS
LGNIINDLVFGITYKRDDPDWLYLQRLQEEGVKLIGVSGVVNFLPWLRHL
PANVRNIRFLLEGKAKTHAIYDRIVEACGQRLKEKQKVFKELQEQKRLQR
QLEKEQLRQSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDT
DSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLLYLAREQRCQRRLHELL
LPLGPSPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYF
IKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIPFSS
GYRMCPGEEMARMILTLFTGRILRRFHLELPSGTEVDMAGESGITLTPTP
HMLRFTKLPAVEMRHAPDGAVVQD*

BS11338.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
phm-PB 574 CG6578-PB 1..574 1..574 3029 100 Plus
phm-PA 574 CG6578-PA 1..574 1..574 3029 100 Plus
Cyp18a1-PB 538 CG6816-PB 54..510 49..548 557 30.6 Plus
Cyp18a1-PA 538 CG6816-PA 54..510 49..548 557 30.6 Plus
Cyp305a1-PA 504 CG8733-PA 30..502 49..557 302 24.6 Plus