Clone Sequence Records
BS11338.3prime Sequence
872 bp (795 high quality bases) assembled on 2006-04-18
> BS11338.3prime
ATGGTCTAGAAAGCTTCTAATCCTGCACCACAGCTCCGTCGGGTGCATGG
CGCATCTCCACCGCCGGCAGCTTGGTGAATCGCAGCATGTGCGGAGTGGG
GGTCAGGGTGATGCCGCTCTCACCCGCCATGTCCACCTCAGTGCCCGAGG
GCAGTTCCAAGTGGAAGCGCCTGAGGATGCGACCCGTAAAGAGCGTGAGT
ATCATGCGAGCCATCTCTTCGCCGGGACACATTCGATAGCCGGACGAGAA
TGGGATGAACTGTGGCGGCGCCTGGTAGGCTCCATCGGCGGTCAAGAAGC
GCTCCGGACGGAACTCCTCCGGTTCCGGGAAGGCCACTGGGTCCATGTGG
ATAGCCCACTCCGAGCAAACGATCATCGAACCACCCTTGATAAAATAATC
GCCCACGACGAAGTTCTCTTTGCATCCGTGCGGAATGCCCAGTGGGACAA
CGCTGCGTATGCGCATCGTCTCGGAAATGCAAGCCCTTAGGTAGGCCAGC
GGCTCCAGTTCCTCCAAAGTGGGAGACGGACCCAGCGGCAGGAGGAGCTC
ATGCAGGCGCCGCTGGCAGCGTTGTTCGCGGGCCAAGTAGAGCAGGAACC
AGCGCAGGGTGGCCAGCGAGGTGTCCACCCCGGCTCCAAAGAGATCGGCC
AGCAGATGGCGCAGCTGGTCGTCGCAGTAGAGCTGCGAATCCGTGTCTCG
AACGGCTAGGAAGTGCTCCAGGATGCACTCCGGCTCGTACGTGTCCTCCT
CATCGCTCTCCTCGTCATCCTCGTCTGCCTCACTCTGCTCCTGGCTTGGA
TCCGCTTCCTTTGACTGCCTGAGCTGCTCCTTCTCTAGCTGCCTTTGCAG
CCGCTTCTGCTCCTGGAGCTCC
BS11338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6578-PA | 1725 | phm-RA | 870..1725 | 872..17 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 2203 | CG6578-RB | 1066..1921 | 872..17 | 4280 | 100 | Minus |
phm-RA | 1997 | CG6578-RA | 1066..1921 | 872..17 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18687296..18688151 | 872..17 | 4280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:44:10 has no hits.
BS11338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:00 Download gff for
BS11338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-PA | 870..1725 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:27 Download gff for
BS11338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6578-PA | 870..1725 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:16:17 Download gff for
BS11338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 1066..1924 | 11..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:24 Download gff for
BS11338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 1066..1924 | 11..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:24 Download gff for
BS11338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18687296..18688154 | 11..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:16:17 Download gff for
BS11338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18581329..18582187 | 11..872 | 99 | | Minus |
BS11338.5prime Sequence
943 bp (861 high quality bases) assembled on 2006-04-18
> BS11338.5prime
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCC
CTGGCTGCGTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGG
AGGGCAAGGCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGT
GGCCAGCGGCTGAAGGAGAAGCAGAAAGTGTTCAAGGAGCTCCAGGAGCA
GAAGCCGCTGCAAAGGCAGCTAGAGAAGGAGCAGCTCAGGCAG
BS11338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6578-PA | 1725 | phm-RA | 1..927 | 17..943 | 4585 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 2203 | CG6578-RB | 197..1123 | 17..943 | 4605 | 99.8 | Plus |
phm-RA | 1997 | CG6578-RA | 197..1123 | 17..943 | 4605 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18686957..18687353 | 547..943 | 1955 | 99.5 | Plus |
X | 23542271 | X | 18685962..18686344 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 18686429..18686578 | 398..547 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:09:27 has no hits.
BS11338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:01 Download gff for
BS11338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:29 Download gff for
BS11338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6578-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:29:20 Download gff for
BS11338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 193..1123 | 10..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:47:15 Download gff for
BS11338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 193..1123 | 10..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:47:15 Download gff for
BS11338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18685958..18686343 | 10..398 | 99 | -> | Plus |
X | 18686430..18686578 | 399..547 | 100 | -> | Plus |
X | 18686958..18687353 | 548..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:29:20 Download gff for
BS11338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18579991..18580376 | 10..398 | 99 | -> | Plus |
arm_X | 18580463..18580611 | 399..547 | 100 | -> | Plus |
arm_X | 18580991..18581386 | 548..943 | 99 | | Plus |
BS11338.complete Sequence
1757 bp assembled on 2007-10-26
GenBank Submission: FJ636829
> BS11338.complete
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCC
CTGGCTGCGTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGG
AGGGCAAGGCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGT
GGCCAGCGGCTGAAGGAGAAGCAGAAGGTGTTCAAGGAGCTCCAGGAGCA
GAAGCGGCTGCAAAGGCAGCTAGAGAAGGAGCAGCTCAGGCAGTCAAAGG
AAGCGGATCCAAGCCAGGAGCAGAGTGAGGCAGACGAGGATGACGAGGAG
AGCGATGAGGAGGACACGTACGAGCCGGAGTGCATCCTGGAGCACTTCCT
AGCCGTTCGAGACACGGATTCGCAGCTCTACTGCGACGACCAGCTGCGCC
ATCTGCTGGCCGATCTCTTTGGAGCCGGGGTGGACACCTCGCTGGCCACC
CTGCGCTGGTTCCTGCTCTACTTGGCCCGCGAACAACGCTGCCAGCGGCG
CCTGCATGAGCTCCTCCTGCCGCTGGGTCCGTCTCCCACTTTGGAGGAAC
TGGAGCCGCTGGCCTACCTAAGGGCTTGCATTTCCGAGACGATGCGCATA
CGCAGCGTTGTCCCACTGGGCATTCCGCACGGATGCAAAGAGAACTTCGT
CGTGGGCGATTATTTTATCAAGGGTGGTTCGATGATCGTTTGCTCGGAGT
GGGCTATCCACATGGACCCAGTGGCCTTCCCGGAACCGGAGGAGTTCCGT
CCGGAGCGCTTCTTGACCGCCGATGGAGCCTACCAGGCGCCGCCACAGTT
CATCCCATTCTCGTCCGGCTATCGAATGTGTCCCGGCGAAGAGATGGCTC
GCATGATACTCACGCTCTTTACGGGTCGCATCCTCAGGCGCTTCCACTTG
GAACTGCCCTCGGGCACTGAGGTGGACATGGCGGGTGAGAGCGGCATCAC
CCTGACCCCCACTCCGCACATGCTGCGATTCACCAAGCTGCCGGCGGTGG
AGATGCGCCATGCACCCGACGGAGCTGTGGTGCAGGATTAGAAGCTTTCT
AGACCAT
BS11338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 1725 | CG6578-PB | 1..1725 | 17..1741 | 8625 | 100 | Plus |
phm-RA | 1725 | CG6578-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 2203 | CG6578-RB | 197..1921 | 17..1741 | 8625 | 100 | Plus |
phm-RA | 1997 | CG6578-RA | 197..1921 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18686957..18688151 | 547..1741 | 5975 | 100 | Plus |
X | 23542271 | X | 18685962..18686344 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 18686429..18686578 | 398..547 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:34:56 has no hits.
BS11338.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:58 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 1..1725 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:45 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 190..1921 | 10..1747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:58 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 197..1921 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:15 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 194..1918 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:33 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 197..1921 | 17..1741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:33 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18685962..18686343 | 17..398 | 100 | -> | Plus |
X | 18686430..18686578 | 399..547 | 100 | -> | Plus |
X | 18686958..18688151 | 548..1741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:58 Download gff for
BS11338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18579995..18580376 | 17..398 | 100 | -> | Plus |
arm_X | 18580463..18580611 | 399..547 | 100 | -> | Plus |
arm_X | 18580991..18582184 | 548..1741 | 100 | | Plus |
BS11338.pep Sequence
Translation from 16 to 1740
> BS11338.pep
MSADIVDIGHTGWMPSVQSLSILLVPGALVLVILYLCERQCNDLMGAPPP
GPWGLPFLGYLPFLDARAPHKSLQKLAKRYGGIFELKMGRVPTVVLSDAA
LVRDFFRRDVMTGRAPLYLTHGIMGGFGIICAQEDIWRHARRETIDWLKA
LGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHS
LGNIINDLVFGITYKRDDPDWLYLQRLQEEGVKLIGVSGVVNFLPWLRHL
PANVRNIRFLLEGKAKTHAIYDRIVEACGQRLKEKQKVFKELQEQKRLQR
QLEKEQLRQSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDT
DSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLLYLAREQRCQRRLHELL
LPLGPSPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYF
IKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIPFSS
GYRMCPGEEMARMILTLFTGRILRRFHLELPSGTEVDMAGESGITLTPTP
HMLRFTKLPAVEMRHAPDGAVVQD*
BS11338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-PB | 574 | CG6578-PB | 1..574 | 1..574 | 3029 | 100 | Plus |
phm-PA | 574 | CG6578-PA | 1..574 | 1..574 | 3029 | 100 | Plus |
Cyp18a1-PB | 538 | CG6816-PB | 54..510 | 49..548 | 557 | 30.6 | Plus |
Cyp18a1-PA | 538 | CG6816-PA | 54..510 | 49..548 | 557 | 30.6 | Plus |
Cyp305a1-PA | 504 | CG8733-PA | 30..502 | 49..557 | 302 | 24.6 | Plus |