Clone Sequence Records
BS11339.3prime Sequence
492 bp (491 high quality bases) assembled on 2006-04-18
> BS11339.3prime
ATGGTCTAGAAAGCTTTTATTGGTGTACTGCTATTTGCGTCTGAGATTTG
TCCATATCCTTGGCTGCCTTCTCTGCTCTCTTCTTCTCCCTGCTGGCCAG
AACTTTCTCCCTGGATTTCTGGGCCCTTTCAGCGCAATCCTTGGGTCGTG
TCTTCAGGGTCATATCATCCACGGCCGCCTGTTTACGGGCTGATCTCGAA
ATGCATCGTTCCATGCAGCTGATGGGCACAAATCTTCCAATGAAGCAACC
GCAGTGTGAACAATAGTGATTGATGTCCTGGCGGCCAGACCATTTTTTAC
AAAGTTTTGTGAATCCCAGAAATCTCTGCAGGCAAGTGACCAACTCCAGT
TGCACCAAACTGGTTCCAGACTTCTCACACGAAGGACAACGGATCCAGGT
GGGCTCCTCCTTCAGGTATCCCACTTGTGGCTTGTGGCTGACAATGATGG
CCACAATCTGCGGTTCGTCCACGGTCATGTCGACTGATAACT
BS11339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-PA | 462 | CG30195-RA | 1..462 | 478..17 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 575 | CG30195-RA | 36..499 | 479..16 | 2320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22646692..22646976 | 16..300 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 22647031..22647210 | 300..479 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:58:13 has no hits.
BS11339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:02 Download gff for
BS11339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:31 Download gff for
BS11339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:16 Download gff for
BS11339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..499 | 16..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:05:51 Download gff for
BS11339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..499 | 16..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:05:51 Download gff for
BS11339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22646692..22646975 | 16..299 | 100 | <- | Plus |
2R | 22647031..22647216 | 300..483 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:16 Download gff for
BS11339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18534197..18534480 | 16..299 | 100 | <- | Plus |
arm_2R | 18534536..18534721 | 300..483 | 98 | | Plus |
BS11339.5prime Sequence
492 bp (491 high quality bases) assembled on 2006-04-18
> BS11339.5prime
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAATAAAAGCTTTCTAGACC
BS11339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-PA | 462 | CG30195-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 575 | CG30195-RA | 36..499 | 16..479 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22646692..22646976 | 479..195 | 1425 | 100 | Minus |
2R | 25286936 | 2R | 22647031..22647210 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:35:23 has no hits.
BS11339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:03 Download gff for
BS11339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:32 Download gff for
BS11339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:30:50 Download gff for
BS11339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..499 | 12..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:23:47 Download gff for
BS11339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..499 | 12..479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:23:47 Download gff for
BS11339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22646692..22646975 | 196..479 | 100 | <- | Minus |
2R | 22647031..22647216 | 12..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:30:50 Download gff for
BS11339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18534197..18534480 | 196..479 | 100 | <- | Minus |
arm_2R | 18534536..18534721 | 12..195 | 98 | | Minus |
BS11339.complete Sequence
494 bp assembled on 2006-11-01
GenBank Submission: FJ636830
> BS11339.complete
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAATAAAAGCTTTCTAGACCAT
BS11339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 462 | CG30195-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 575 | CG30195-RA | 36..499 | 16..479 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22646692..22646976 | 479..195 | 1425 | 100 | Minus |
2R | 25286936 | 2R | 22647031..22647210 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:59 has no hits.
BS11339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:33 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:47 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 26..495 | 12..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:57 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 37..496 | 17..476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:33 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 26..495 | 12..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:39 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 37..496 | 17..476 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:39 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22646695..22646975 | 196..476 | 100 | <- | Minus |
2R | 22647031..22647209 | 17..195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:57 Download gff for
BS11339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18534200..18534480 | 196..476 | 100 | <- | Minus |
arm_2R | 18534536..18534714 | 17..195 | 100 | | Minus |
BS11339.pep Sequence
Translation from 16 to 477
> BS11339.pep
MTVDEPQIVAIIVSHKPQVGYLKEEPTWIRCPSCEKSGTSLVQLELVTCL
QRFLGFTKLCKKWSGRQDINHYCSHCGCFIGRFVPISCMERCISRSARKQ
AAVDDMTLKTRPKDCAERAQKSREKVLASREKKRAEKAAKDMDKSQTQIA
VHQ*
BS11339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-PA | 153 | CG30195-PA | 1..153 | 1..153 | 812 | 100 | Plus |
CG30196-PA | 147 | CG30196-PA | 16..145 | 13..137 | 203 | 34.6 | Plus |