Clone BS11339 Report

Search the DGRC for BS11339

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG30195-RA
Protein status:BS11339.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11339.3prime Sequence

492 bp (491 high quality bases) assembled on 2006-04-18

> BS11339.3prime
ATGGTCTAGAAAGCTTTTATTGGTGTACTGCTATTTGCGTCTGAGATTTG
TCCATATCCTTGGCTGCCTTCTCTGCTCTCTTCTTCTCCCTGCTGGCCAG
AACTTTCTCCCTGGATTTCTGGGCCCTTTCAGCGCAATCCTTGGGTCGTG
TCTTCAGGGTCATATCATCCACGGCCGCCTGTTTACGGGCTGATCTCGAA
ATGCATCGTTCCATGCAGCTGATGGGCACAAATCTTCCAATGAAGCAACC
GCAGTGTGAACAATAGTGATTGATGTCCTGGCGGCCAGACCATTTTTTAC
AAAGTTTTGTGAATCCCAGAAATCTCTGCAGGCAAGTGACCAACTCCAGT
TGCACCAAACTGGTTCCAGACTTCTCACACGAAGGACAACGGATCCAGGT
GGGCTCCTCCTTCAGGTATCCCACTTGTGGCTTGTGGCTGACAATGATGG
CCACAATCTGCGGTTCGTCCACGGTCATGTCGACTGATAACT

BS11339.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-PA 462 CG30195-RA 1..462 478..17 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..499 479..16 2320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646692..22646976 16..300 1425 100 Plus
2R 25286936 2R 22647031..22647210 300..479 900 100 Plus
Blast to na_te.dros performed on 2015-02-03 17:58:13 has no hits.

BS11339.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:02 Download gff for BS11339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:31 Download gff for BS11339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:16 Download gff for BS11339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..499 16..483 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:05:51 Download gff for BS11339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..499 16..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:05:51 Download gff for BS11339.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22646692..22646975 16..299 100 <- Plus
2R 22647031..22647216 300..483 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:16 Download gff for BS11339.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534197..18534480 16..299 100 <- Plus
arm_2R 18534536..18534721 300..483 98   Plus

BS11339.5prime Sequence

492 bp (491 high quality bases) assembled on 2006-04-18

> BS11339.5prime
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAATAAAAGCTTTCTAGACC

BS11339.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-PA 462 CG30195-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..499 16..479 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646692..22646976 479..195 1425 100 Minus
2R 25286936 2R 22647031..22647210 195..16 900 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:35:23 has no hits.

BS11339.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:03 Download gff for BS11339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:32 Download gff for BS11339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:30:50 Download gff for BS11339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..499 12..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:23:47 Download gff for BS11339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..499 12..479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:23:47 Download gff for BS11339.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22646692..22646975 196..479 100 <- Minus
2R 22647031..22647216 12..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:30:50 Download gff for BS11339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534197..18534480 196..479 100 <- Minus
arm_2R 18534536..18534721 12..195 98   Minus

BS11339.complete Sequence

494 bp assembled on 2006-11-01

GenBank Submission: FJ636830

> BS11339.complete
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAATAAAAGCTTTCTAGACCAT

BS11339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 462 CG30195-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..499 16..479 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646692..22646976 479..195 1425 100 Minus
2R 25286936 2R 22647031..22647210 195..16 900 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:38:59 has no hits.

BS11339.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:33 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:47 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 26..495 12..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:57 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 37..496 17..476 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:33 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 26..495 12..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:39 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 37..496 17..476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:39 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22646695..22646975 196..476 100 <- Minus
2R 22647031..22647209 17..195 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:57 Download gff for BS11339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534200..18534480 196..476 100 <- Minus
arm_2R 18534536..18534714 17..195 100   Minus

BS11339.pep Sequence

Translation from 16 to 477

> BS11339.pep
MTVDEPQIVAIIVSHKPQVGYLKEEPTWIRCPSCEKSGTSLVQLELVTCL
QRFLGFTKLCKKWSGRQDINHYCSHCGCFIGRFVPISCMERCISRSARKQ
AAVDDMTLKTRPKDCAERAQKSREKVLASREKKRAEKAAKDMDKSQTQIA
VHQ*

BS11339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-PA 153 CG30195-PA 1..153 1..153 812 100 Plus
CG30196-PA 147 CG30196-PA 16..145 13..137 203 34.6 Plus