Clone BS11343 Report

Search the DGRC for BS11343

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG11131-RA
Protein status:BS11343.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11343.3prime Sequence

720 bp (719 high quality bases) assembled on 2006-04-18

> BS11343.3prime
ATGGTCTAGAAAGCTTCTAGTGGCGGTAGCGGTAACGCAGACGGCGCACA
GTCTTGTAGCGGTAGCCGTCCTTGGCCAACTCAGTGCCCTCCTCAGCGGA
CTTTGGCTCGGCCTCGGCGGCAGCGGGGGCGGCAGCGGCAGCCTCAGCGG
GGGGCAGGTACTCTCCGTTGGGTGCGGACTCGGCAGCAGCCTCTTCGGCG
ACAGCCTCGCGGCGGTGGCGGCGGAACTTGAGACGGCGCACTGTCTTGTA
CTTGTAGCCATCATCACCAAGAATGGTTTTTAGCTCGGGAGCAAGCTCAA
CCTGCACGGGTGGGAGGTACTCGCCGCTGGGCTCAGCGATTTCGGAGACG
TCGCGGCGGTGGCGAGCACGGAACTTAAGCTTGCGCACCGTTTTGTACCG
GTAGCCGTCGTCGGCAACCTTGGTGTCACCAATGGCGGCGGCATCTACTG
GCGGCAGATATTCCTGGCTAGGTGCGTTTTCCACGGGAGGAAGGTATTCC
TGGTTAGGCACCTCGCGGCGGTGGCGCAGCTTCAGCCGGCGCACGGTCCT
GTACTTATATCCGTTCTCCGAAAGCTGGGCGGCCTCCGCCTCGCCGACGG
GAGGCAGGTACTCGGAGGAAGGCTCCAGTGCAGCAGCGGGATCAGCAGAT
TGGGCTGCCGCAAAGGCCACTAGGCAGATGGCAAGGACGGCGGTGAAGAG
TTTCATGTCGACTGATAACT

BS11343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-PA 690 CG11131-RA 1..690 706..17 3450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 1379 CG11131-RB 525..1214 706..17 3450 100 Minus
CG11131-RA 949 CG11131-RA 95..784 706..17 3450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22899410..22900097 704..17 3440 100 Minus
Blast to na_te.dros performed 2015-02-12 05:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 640..692 668..617 109 69.8 Minus

BS11343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:09 Download gff for BS11343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 17..706 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:40 Download gff for BS11343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 17..706 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:46 Download gff for BS11343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 13..711 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:20 Download gff for BS11343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 13..711 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:20 Download gff for BS11343.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22899400..22900099 13..718 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:46 Download gff for BS11343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22892500..22893199 13..718 99   Minus

BS11343.5prime Sequence

720 bp (719 high quality bases) assembled on 2006-04-18

> BS11343.5prime
GAAGTTATCAGTCGACATGAAACTCTTCACCGCCGTCCTTGCCATCTGCC
TAGTGGCCTTTGCGGCAGCCCAATCTGCTGATCCCGCTGCTGCACTGGAG
CCTTCCTCCGAGTACCTGCCTCCCGTCGGCGAGGCGGAGGCCGCCCAGCT
TTCGGAGAACGGATATAAGTACAGGACCGTGCGCCGGCTGAAGCTGCGCC
ACCGCCGCGAGGTGCCTAACCAGGAATACCTTCCTCCCGTGGAAAACGCA
CCTAGCCAGGAATATCTGCCGCCAGTAGATGCCGCCGCCATTGGTGACAC
CAAGGTTGCCGACGACGGCTACCGGTACAAAACGGTGCGCAAGCTTAAGT
TCCGTGCTCGCCACCGCCGCGACGTCTCCGAAATCGCTGAGCCCAGCGGC
GAGTACCTCCCACCCGTGCAGGTTGAGCTTGCTCCCGAGCTAAAAACCAT
TCTTGGTGATGATGGCTACAAGTACAAGACAGTGCGCCGTCTCAAGTTCC
GCCGCCACCGCCGCGAGGCTGTCGCCGAAGAGGCTGCTGCCGAGTCCGCA
CCCAACGGAGAGTACCTGCCCCCCGCTGAGGCTGCCGCTGCCGCCCCCGC
TGCCGCCGAGGCCGAGCCAAAGTCCGCTGAGGAGGGCACTGAGTTGGCCA
AGGACGGCTACCGCTACAAGACTGTGCGCCGTCTGCGTTACCGCTACCGC
CACTAGAAGCTTTCTAGACC

BS11343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-PA 690 CG11131-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 1379 CG11131-RB 525..1214 17..706 3450 100 Plus
CG11131-RA 949 CG11131-RA 95..784 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22899410..22900097 19..706 3440 100 Plus
Blast to na_te.dros performed 2015-02-12 11:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 640..692 55..106 109 69.8 Plus

BS11343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:10 Download gff for BS11343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:41 Download gff for BS11343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:45 Download gff for BS11343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 12..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:34 Download gff for BS11343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 12..710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:34 Download gff for BS11343.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22899400..22900099 5..710 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:45 Download gff for BS11343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22892500..22893199 5..710 99   Plus

BS11343.complete Sequence

722 bp assembled on 2006-11-01

GenBank Submission: FJ636831

> BS11343.complete
GAAGTTATCAGTCGACATGAAACTCTTCACCGCCGTCCTTGCCATCTGCC
TAGTGGCCTTTGCGGCAGCCCAATCTGCTGATCCCGCTGCTGCACTGGAG
CCTTCCTCCGAGTACCTGCCTCCCGTCGGCGAGGCGGAGGCCGCCCAGCT
TTCGGAGAACGGATATAAGTACAGGACCGTGCGCCGGCTGAAGCTGCGCC
ACCGCCGCGAGGTGCCTAACCAGGAATACCTTCCTCCCGTGGAAAACGCA
CCTAGCCAGGAATATCTGCCGCCAGTAGATGCCGCCGCCATTGGTGACAC
CAAGGTTGCCGACGACGGCTACCGGTACAAAACGGTGCGCAAGCTTAAGT
TCCGTGCTCGCCACCGCCGCGACGTCTCCGAAATCGCTGAGCCCAGCGGC
GAGTACCTCCCACCCGTGCAGGTTGAGCTTGCTCCCGAGCTAAAAACCAT
TCTTGGTGATGATGGCTACAAGTACAAGACAGTGCGCCGTCTCAAGTTCC
GCCGCCACCGCCGCGAGGCTGTCGCCGAAGAGGCTGCTGCCGAGTCCGCA
CCCAACGGAGAGTACCTGCCCCCCGCTGAGGCTGCCGCTGCCGCCCCCGC
TGCCGCCGAGGCCGAGCCAAAGTCCGCTGAGGAGGGCACTGAGTTGGCCA
AGGACGGCTACCGCTACAAGACTGTGCGCCGTCTGCGTTACCGCTACCGC
CACTAGAAGCTTTCTAGACCAT

BS11343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 690 CG11131-PB 1..690 17..706 3450 100 Plus
CG11131-RA 690 CG11131-PA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 1379 CG11131-RB 525..1214 17..706 3450 100 Plus
CG11131-RA 949 CG11131-RA 95..784 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22899410..22900097 19..706 3440 100 Plus
Blast to na_te.dros performed 2014-11-27 20:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 640..692 55..106 109 69.8 Plus

BS11343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:57 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:22 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 84..780 12..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:49 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 95..784 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:57 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 84..780 12..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:03 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 95..784 17..706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:03 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22899409..22900097 17..706 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:49 Download gff for BS11343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22892509..22893197 17..706 99   Plus

BS11343.pep Sequence

Translation from 16 to 705

> BS11343.pep
MKLFTAVLAICLVAFAAAQSADPAAALEPSSEYLPPVGEAEAAQLSENGY
KYRTVRRLKLRHRREVPNQEYLPPVENAPSQEYLPPVDAAAIGDTKVADD
GYRYKTVRKLKFRARHRRDVSEIAEPSGEYLPPVQVELAPELKTILGDDG
YKYKTVRRLKFRRHRREAVAEEAAAESAPNGEYLPPAEAAAAAPAAAEAE
PKSAEEGTELAKDGYRYKTVRRLRYRYRH*

BS11343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-PB 229 CG11131-PB 1..229 1..229 1170 100 Plus
CG11131-PA 229 CG11131-PA 1..229 1..229 1170 100 Plus
CG32237-PA 911 CG32237-PA 1..240 1..228 398 44.5 Plus
CG32237-PA 911 CG32237-PA 581..800 28..228 392 44.9 Plus
CG32237-PA 911 CG32237-PA 189..408 28..228 388 44.4 Plus
CG32237-PA 911 CG32237-PA 469..688 28..228 388 44.4 Plus
CG32237-PA 911 CG32237-PA 77..296 28..228 387 44.9 Plus
CG13705-PA 432 CG13705-PA 1..202 1..228 387 45.5 Plus
CG32237-PA 911 CG32237-PA 301..520 28..228 385 44.9 Plus
CG32237-PA 911 CG32237-PA 245..464 28..228 380 44.1 Plus
CG32237-PA 911 CG32237-PA 525..744 28..228 379 43.6 Plus
CG32237-PA 911 CG32237-PA 637..856 28..228 375 43.6 Plus
CG32237-PA 911 CG32237-PA 693..908 28..228 372 42.9 Plus
CG13705-PA 432 CG13705-PA 206..432 28..229 371 43.4 Plus
CG13705-PA 432 CG13705-PA 161..338 28..228 355 46.9 Plus
CG7465-PA 321 CG7465-PA 1..264 1..229 355 39.7 Plus
CG32237-PA 911 CG32237-PA 749..909 28..166 288 45.5 Plus