Clone BS11344 Report

Search the DGRC for BS11344

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS11344.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS11344.3prime Sequence

849 bp (848 high quality bases) assembled on 2006-04-18

> BS11344.3prime
ATGGTCTAGAAAGCTTTTAACAATAAATAAAAATATAAAATTCGCAATAT
ATTAAAGTTAATGAACTTACCGCTCCCGCAGAATCGTAGTACACACGATT
CGGAACAGGTCGCCTTACTGGCGGAGGTGCCGCATAGTTGGGATCCACTT
CAGGATCGCTCTGCGCATCTCCAGCAGGACGAACTGGATCTCTTAGAGGA
TCTCTGACTGGAACACCAGGCACCACGGCCGAGTTAAGAATTCCTGGAGC
AAAGAGCGATAGCCAGGTGGCAAATGGTGCGTACGGACGCACTGGCACTG
GAATGGGTTGTACAGGTGGAAGAGGATCAGACAGAAGACCTCCACCCAAA
CCACCTCCTCCATAGCCGCGACATCCACCGGGATATACTTTCACCACATT
CACGTCGAACAGAAAGCGACCCTGTTCAGCGGGATCCTTCTGATTCTGAC
CACCTCGAGCATCGCGACCAAACGGGGAGCAGGGACCACCGCCGTATCCT
CCATATCCGCCATATCCACCATATCCGCCATATCCACCATATCCTCCTAG
GTAGGGCCTGGCCAACCTCTTGAGCTTCTTTTTAAGCAGCAGTGTGCGTT
CGTCACCGGTTTCATCCAATTCCTGATTGGAAGCACCAGCAAACTTGGCA
TTCTCCTTGTCCGATTTGCTGGTGGTACTTTCTTCCCTAGCCTTCCGACC
GGCCAAAGAGCTATACGAATTCCCGGAATACGATGTGGAGTAGGCCCTTC
GGCGGGGATACTCGTAACTATAGGTGCGCGGATAGGCCAACGAATAGCCC
AAGGCTCCCAGAAGGAGTAGAAGAAACAGTTTCATGTCGACTGATAACT

BS11344.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-PA 906 CG14329-RA 1..765 835..71 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-RA 1103 CG14329-RA 65..829 835..71 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17609423..17610248 835..10 4100 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:15:04 has no hits.

BS11344.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:11 Download gff for BS11344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-PA 1..819 17..835 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:43 Download gff for BS11344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-PA 1..765 71..835 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:29 Download gff for BS11344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 60..829 71..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:49 Download gff for BS11344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 60..829 71..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:49 Download gff for BS11344.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17609418..17610248 10..840 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:29 Download gff for BS11344.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13435140..13435970 10..840 99   Minus

BS11344.5prime Sequence

850 bp (807 high quality bases) assembled on 2006-04-18

> BS11344.5prime
GAAGTTATCAGTCGACATGAAACTGTTTCTTCTACTCCTTCTGGGAGCCT
TGGGCTATTCGTTGGCCTATCCGCGCACCTATAGTTACGAGTATCCCCGC
CGAAGGGCCTACTCCACATCGTATTCCGGGAATTCGTATAGCTCTTTGGC
CGGTCGGAAGGCTAGGGAAGAAAGTACCACCAGCAAATCGGACAAGGAGA
ATGCCAAGTTTGCTGGTGCTTCCAATCAGGAATTGGATGAAACCGGTGAC
GAACGCACACTGCTGCTTAAAAAGAAGCTCAAGAGGTTGGCCAGGCCCTA
CCTAGGAGGATATGGTGGATATGGCGGATATGGTGGATATGGCGGATATG
GAGGATACGGCGGTGGTCCCTGCTCCCCGTTTGGTCGCGATGCTCGAGGT
GGTCAGAATCAGAAGGATCCCGCTGAACAGGGTCGCTTTCTGTTCGACGT
GAATGTGGTGAAAGTATATCCCGGTGGATGTCGCGGCTATGGAGGAGGTG
GTTTGGGTGGAGGTCTTCTGTCTGATCCTCTTCCACCTGTACAACCCATT
CCAGTGCCAGTGCGTCCGTACGCACCATTTGCCACCTGGCTATCGCTCTT
TGCTCCAGGAATTCTTAACTCGGCCGTGGTGCCTGGTGTTCCAGTCAGAG
ATCCTCTAAGAGATCCAGTTCGTCCTGCTGGAGATGCGCAGAGCGATCCT
GAAGTGGATCCCAACTATGCGGCACCTCCGCCAGTAAGGCGACCTGTTCC
GAATCGTGTGTACTACGATTCTGCGGGAGCGGTAAGTTCATTAACTTTAA
TATATTGCGAAATTTATATTTTTATTTATTGTTTAAAAGCTTTCTAGACC

BS11344.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-PA 906 CG14329-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-RA 1103 CG14329-RA 65..829 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17609423..17610239 17..833 4070 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:55:05 has no hits.

BS11344.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:12 Download gff for BS11344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-PA 1..819 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:44 Download gff for BS11344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-PA 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:07 Download gff for BS11344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 60..829 12..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:34 Download gff for BS11344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 60..829 12..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:34 Download gff for BS11344.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17609418..17610248 12..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:07 Download gff for BS11344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13435140..13435970 12..843 99   Plus

BS11344.complete Sequence

851 bp assembled on 2006-11-01

> BS11344.complete
GAAGTTATCAGTCGACATGAAACTGTTTCTTCTACTCCTTCTGGGAGCCT
TGGGCTATTCGTTGGCCTATCCGCGCACCTATAGTTACGAGTATCCCCGC
CGAAGGGCCTACTCCACATCGTATTCCGGGAATTCGTATAGCTCTTTGGC
CGGTCGGAAGGCTAGGGAAGAAAGTACCACCAGCAAATCGGACAAGGAGA
ATGCCAAGTTTGCTGGTGCTTCCAATCAGGAATTGGATGAAACCGGTGAC
GAACGCACACTGCTGCTTAAAAAGAAGCTCAAGAGGTTGGCCAGGCCCTA
CCTAGGAGGATATGGTGGATATGGCGGATATGGTGGATATGGCGGATATG
GAGGATACGGCGGTGGTCCCTGCTCCCCGTTTGGTCGCGATGCTCGAGGT
GGTCAGAATCAGAAGGATCCCGCTGAACAGGGTCGCTTTCTGTTCGACGT
GAATGTGGTGAAAGTATATCCCGGTGGATGTCGCGGCTATGGAGGAGGTG
GTTTGGGTGGAGGTCTTCTGTCTGATCCTCTTCCACCTGTACAACCCATT
CCAGTGCCAGTGCGTCCGTACGCACCATTTGCCACCTGGCTATCGCTCTT
TGCTCCAGGAATTCTTAACTCGGCCGTGGTGCCTGGTGTTCCAGTCAGAG
ATCCTCTAAGAGATCCAGTTCGTCCTGCTGGAGATGCGCAGAGCGATCCT
GAAGTGGATCCCAACTATGCGGCACCTCCGCCAGTAAGGCGACCTGTTCC
GAATCGTGTGTACTACGATTCTGCGGGAGCGGTAAGTTCATTAACTTTAA
TATATTGCGAATTTTATATTTTTATTTATTGTTAAAAGCTTTCTAGACCA
T

BS11344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-RA 906 CG14329-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-RA 1103 CG14329-RA 65..829 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17609423..17610248 17..842 4100 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 19:37:57 has no hits.

BS11344.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:50:45 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:25:50 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 57..826 12..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:29 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 65..829 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:50:45 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 57..826 12..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:15 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
CG14329-RA 65..829 17..781 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:15 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17609423..17610239 17..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:29 Download gff for BS11344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13435145..13435961 17..833 100   Plus

BS11344.pep Sequence

Translation from 16 to 834

> BS11344.pep
MKLFLLLLLGALGYSLAYPRTYSYEYPRRRAYSTSYSGNSYSSLAGRKAR
EESTTSKSDKENAKFAGASNQELDETGDERTLLLKKKLKRLARPYLGGYG
GYGGYGGYGGYGGYGGGPCSPFGRDARGGQNQKDPAEQGRFLFDVNVVKV
YPGGCRGYGGGGLGGGLLSDPLPPVQPIPVPVRPYAPFATWLSLFAPGIL
NSAVVPGVPVRDPLRDPVRPAGDAQSDPEVDPNYAAPPPVRRPVPNRVYY
DSAGAVSSLTLIYCEFYIFIYC*

BS11344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14329-PA 301 CG14329-PA 1..255 1..255 1372 100 Plus