Clone BS11345 Report

Search the DGRC for BS11345

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG13321-RA
Protein status:BS11345.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11345.3prime Sequence

839 bp (805 high quality bases) assembled on 2006-04-18

> BS11345.3prime
ATGGTCTAGAAAGCTTTCAGCCCTTGACCAGGACCTCGTAGTGGTCGATG
CGGACCTCCTCGCCGTCGAATGGGATGTAGAGGCAATGGTGTGACTGGTG
GATCTTGCCGGGAGTGAGGCTGCCGTGGTGGTGGGCACGGCCGATGAACA
GGGGCTCTCCGTCGGAAGTGCGGCCGCAGAGAACGGCATTGCCGGGCACA
TTGCCATGGCTGTCGTGCACCCATCCGTACCCGTATCCGGCCAGCAGCTC
GTAGTCGTGCTTCACAACCTCACCGCCTCCGTAGGGCACATAGGCACAGC
CCTTGTTGGGGATCACCTTGGCTGGCAGCAAATCGCCCTCGTGGTAGGCG
CGACCCACATAGATCTGATCGCCATCGGCGTCGTGTCCGCCAACCACTGT
TCCGGGAACAATGCCGCGTCCGCTAGAGGCTATCCACGTCTCGGGCTGGA
CCAGCACTTCATAGGCTTCCAGACGGTGCTCCTGTCCGCCGTAGGGGATG
TACAAACACTGGTGCGAGGGATGGACCTTGCCGGGGGTGAGGCTGCCCTG
GAAGTAACCACGGCCCACGTACAGGGGCTCACCCTCGCCAGTCTGGCCCA
CTTGGATGGCATGGGGCGGGACAGATCCACCACTGGACGGGATCCAGGAG
AAGTGATCACCGACAAGGACCTCGAAGTCATGCTTGCTGATCTCCTGACC
GCCCCATGGCACATAGGCCTGCTGCTTGCCGGGCACCACCTTCGCTGGCA
GCATCTCTCCATTGTGGTAGGCACGGCCCACAAAGATGGGATCCTGGTCG
GAGTCGTGGCCAGCTAGGATGGCTCCTGGGGGCAGGGAT

BS11345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-PA 861 CG13321-RA 39..861 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-RB 2043 CG13321-RB 584..1406 839..17 4115 100 Minus
CG13321-RA 1060 CG13321-RA 143..965 839..17 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12953989..12954349 839..479 1805 100 Minus
2R 25286936 2R 12954774..12955075 318..17 1510 100 Minus
2R 25286936 2R 12954499..12954666 480..313 840 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:00:36 has no hits.

BS11345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:13 Download gff for BS11345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-PA 39..861 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:45 Download gff for BS11345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-PA 39..861 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:57:24 Download gff for BS11345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 143..972 7..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:42 Download gff for BS11345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 143..972 7..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:42 Download gff for BS11345.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12953989..12954349 479..839 100 -> Minus
2R 12954501..12954662 317..478 100 -> Minus
2R 12954776..12955082 7..316 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:57:24 Download gff for BS11345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8841494..8841854 479..839 100 -> Minus
arm_2R 8842006..8842167 317..478 100 -> Minus
arm_2R 8842281..8842587 7..316 98   Minus

BS11345.5prime Sequence

891 bp (817 high quality bases) assembled on 2006-04-18

> BS11345.5prime
GAAGTTATCAGTCGACATGGGAGACTACACCTGGATTAGCACCAACGTTT
ACGGATCCCTGCCCCCAGGAGCCATCCTAGCTGGCCACGACTCCGACCAG
GATCCCATCTTTGTGGGCCGTGCCTACCACAATGGAGAGATGCTGCCAGC
GAAGGTGGTGCCCGGCAAGCAGCAGGCCTATGTGCCATGGGGCGGTCAGG
AGATCAGCAAGCATGACTTCGAGGTCCTTGTCGGTGATCACTTCTCCTGG
ATCCCGTCCAGTGGTGGATCTGTCCCGCCCCATGCCATCCAAGTGGGCCA
GACTGGCGAGGGTGAGCCCCTGTACGTGGGCCGTGGTTACTTCCAGGGCA
GCCTCACCCCCGGCAAGGTCCATCCCTCGCACCAGTGTTTGTACATCCCC
TACGGCGGACAGGAGCACCGTCTGGAAGCCTATGAAGTGCTGGTCCAGCC
CGAGACGTGGATAGCCTCTAGCGGACGCGGCATTGTTCCCGGAACAGTGG
TTGGCGGACACGACGCCGATGGCGATCAGATCTATGTGGGTCGCGCCTAC
CACGAGGGCGATTTGCTGCCAGCCAAGGTGATCCCCAACAAGGGCTGTGC
CTATGTGCCCTACGGAGGCGGTGAGGTTGTGAAGCACGACTACGAGCTGC
TGGCCGGATACGGGTACGGATGGGTGCACGACAGCCATGGCAATGTGCCC
GGCAATGCCGTTCTCTGCGGCCGCACTTCCGACGGAGAGCCCCTGTTCAT
CGGCCGTGCCCACCACCACGGCAGCCTCACTCCCGGCAAGATCCACCAGT
CACACCATTGCCTCTACATCCCATTCGACGGCGAGGAGGTCCGCATCGAC
CACTACGAGGTCCTGGTCAAGGGCTGAAAGCTTTCTAGACC

BS11345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-PA 861 CG13321-RA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-RB 2043 CG13321-RB 544..1406 15..877 4315 100 Plus
CG13321-RA 1060 CG13321-RA 103..965 15..877 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12953956..12954349 22..415 1970 100 Plus
2R 25286936 2R 12954774..12955075 576..877 1510 100 Plus
2R 25286936 2R 12954499..12954666 414..581 840 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:02:27 has no hits.

BS11345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:14 Download gff for BS11345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:47 Download gff for BS11345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:44 Download gff for BS11345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 98..972 7..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:38 Download gff for BS11345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 98..972 7..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:38 Download gff for BS11345.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12953956..12954349 22..415 100 -> Plus
2R 12954501..12954662 416..577 100 -> Plus
2R 12954776..12955082 578..887 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:44 Download gff for BS11345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8841461..8841854 22..415 100 -> Plus
arm_2R 8842006..8842167 416..577 100 -> Plus
arm_2R 8842281..8842587 578..887 98   Plus

BS11345.complete Sequence

893 bp assembled on 2006-11-01

GenBank Submission: FJ636832

> BS11345.complete
GAAGTTATCAGTCGACATGGGAGACTACACCTGGATTAGCACCAACGTTT
ACGGATCCCTGCCCCCAGGAGCCATCCTAGCTGGCCACGACTCCGACCAG
GATCCCATCTTTGTGGGCCGTGCCTACCACAATGGAGAGATGCTGCCAGC
GAAGGTGGTGCCCGGCAAGCAGCAGGCCTATGTGCCATGGGGCGGTCAGG
AGATCAGCAAGCATGACTTCGAGGTCCTTGTCGGTGATCACTTCTCCTGG
ATCCCGTCCAGTGGTGGATCTGTCCCGCCCCATGCCATCCAAGTGGGCCA
GACTGGCGAGGGTGAGCCCCTGTACGTGGGCCGTGGTTACTTCCAGGGCA
GCCTCACCCCCGGCAAGGTCCATCCCTCGCACCAGTGTTTGTACATCCCC
TACGGCGGACAGGAGCACCGTCTGGAAGCCTATGAAGTGCTGGTCCAGCC
CGAGACGTGGATAGCCTCTAGCGGACGCGGCATTGTTCCCGGAACAGTGG
TTGGCGGACACGACGCCGATGGCGATCAGATCTATGTGGGTCGCGCCTAC
CACGAGGGCGATTTGCTGCCAGCCAAGGTGATCCCCAACAAGGGCTGTGC
CTATGTGCCCTACGGAGGCGGTGAGGTTGTGAAGCACGACTACGAGCTGC
TGGCCGGATACGGGTACGGATGGGTGCACGACAGCCATGGCAATGTGCCC
GGCAATGCCGTTCTCTGCGGCCGCACTTCCGACGGAGAGCCCCTGTTCAT
CGGCCGTGCCCACCACCACGGCAGCCTCACTCCCGGCAAGATCCACCAGT
CACACCATTGCCTCTACATCCCATTCGACGGCGAGGAGGTCCGCATCGAC
CACTACGAGGTCCTGGTCAAGGGCTGAAAGCTTTCTAGACCAT

BS11345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-RB 861 CG13321-PB 1..861 17..877 4305 100 Plus
CG13321-RA 861 CG13321-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-RB 2043 CG13321-RB 544..1406 15..877 4315 100 Plus
CG13321-RA 1060 CG13321-RA 103..965 15..877 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12953956..12954349 22..415 1970 100 Plus
2R 25286936 2R 12954774..12955075 576..877 1510 100 Plus
2R 25286936 2R 12954499..12954666 414..581 840 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:29 has no hits.

BS11345.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:24 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:36 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 95..969 7..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:50 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 105..964 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:25 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 95..969 7..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:13 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
CG13321-RA 105..964 17..876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:13 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12953953..12954349 17..415 98 -> Plus
2R 12954501..12954662 416..577 100 -> Plus
2R 12954776..12955074 578..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:50 Download gff for BS11345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8842281..8842579 578..876 100   Plus
arm_2R 8841458..8841854 17..415 98 -> Plus
arm_2R 8842006..8842167 416..577 100 -> Plus

BS11345.pep Sequence

Translation from 16 to 876

> BS11345.pep
MGDYTWISTNVYGSLPPGAILAGHDSDQDPIFVGRAYHNGEMLPAKVVPG
KQQAYVPWGGQEISKHDFEVLVGDHFSWIPSSGGSVPPHAIQVGQTGEGE
PLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLVQPETWIA
SSGRGIVPGTVVGGHDADGDQIYVGRAYHEGDLLPAKVIPNKGCAYVPYG
GGEVVKHDYELLAGYGYGWVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHH
HGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLVKG*

BS11345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13321-PB 286 CG13321-PB 1..286 1..286 1596 100 Plus
CG13321-PA 286 CG13321-PA 1..286 1..286 1596 100 Plus
CG44250-PB 286 CG44250-PB 2..285 3..285 878 56.5 Plus
CG44250-PC 297 CG44250-PC 13..296 3..285 878 56.5 Plus
CG32633-PB 285 CG32633-PB 1..284 1..285 811 53.3 Plus