Clone Sequence Records
BS11345.3prime Sequence
839 bp (805 high quality bases) assembled on 2006-04-18
> BS11345.3prime
ATGGTCTAGAAAGCTTTCAGCCCTTGACCAGGACCTCGTAGTGGTCGATG
CGGACCTCCTCGCCGTCGAATGGGATGTAGAGGCAATGGTGTGACTGGTG
GATCTTGCCGGGAGTGAGGCTGCCGTGGTGGTGGGCACGGCCGATGAACA
GGGGCTCTCCGTCGGAAGTGCGGCCGCAGAGAACGGCATTGCCGGGCACA
TTGCCATGGCTGTCGTGCACCCATCCGTACCCGTATCCGGCCAGCAGCTC
GTAGTCGTGCTTCACAACCTCACCGCCTCCGTAGGGCACATAGGCACAGC
CCTTGTTGGGGATCACCTTGGCTGGCAGCAAATCGCCCTCGTGGTAGGCG
CGACCCACATAGATCTGATCGCCATCGGCGTCGTGTCCGCCAACCACTGT
TCCGGGAACAATGCCGCGTCCGCTAGAGGCTATCCACGTCTCGGGCTGGA
CCAGCACTTCATAGGCTTCCAGACGGTGCTCCTGTCCGCCGTAGGGGATG
TACAAACACTGGTGCGAGGGATGGACCTTGCCGGGGGTGAGGCTGCCCTG
GAAGTAACCACGGCCCACGTACAGGGGCTCACCCTCGCCAGTCTGGCCCA
CTTGGATGGCATGGGGCGGGACAGATCCACCACTGGACGGGATCCAGGAG
AAGTGATCACCGACAAGGACCTCGAAGTCATGCTTGCTGATCTCCTGACC
GCCCCATGGCACATAGGCCTGCTGCTTGCCGGGCACCACCTTCGCTGGCA
GCATCTCTCCATTGTGGTAGGCACGGCCCACAAAGATGGGATCCTGGTCG
GAGTCGTGGCCAGCTAGGATGGCTCCTGGGGGCAGGGAT
BS11345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-PA | 861 | CG13321-RA | 39..861 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 2043 | CG13321-RB | 584..1406 | 839..17 | 4115 | 100 | Minus |
CG13321-RA | 1060 | CG13321-RA | 143..965 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12953989..12954349 | 839..479 | 1805 | 100 | Minus |
2R | 25286936 | 2R | 12954774..12955075 | 318..17 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 12954499..12954666 | 480..313 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:00:36 has no hits.
BS11345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:13 Download gff for
BS11345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 39..861 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:45 Download gff for
BS11345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 39..861 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:57:24 Download gff for
BS11345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 143..972 | 7..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:42 Download gff for
BS11345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 143..972 | 7..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:42 Download gff for
BS11345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12953989..12954349 | 479..839 | 100 | -> | Minus |
2R | 12954501..12954662 | 317..478 | 100 | -> | Minus |
2R | 12954776..12955082 | 7..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:57:24 Download gff for
BS11345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8841494..8841854 | 479..839 | 100 | -> | Minus |
arm_2R | 8842006..8842167 | 317..478 | 100 | -> | Minus |
arm_2R | 8842281..8842587 | 7..316 | 98 | | Minus |
BS11345.5prime Sequence
891 bp (817 high quality bases) assembled on 2006-04-18
> BS11345.5prime
GAAGTTATCAGTCGACATGGGAGACTACACCTGGATTAGCACCAACGTTT
ACGGATCCCTGCCCCCAGGAGCCATCCTAGCTGGCCACGACTCCGACCAG
GATCCCATCTTTGTGGGCCGTGCCTACCACAATGGAGAGATGCTGCCAGC
GAAGGTGGTGCCCGGCAAGCAGCAGGCCTATGTGCCATGGGGCGGTCAGG
AGATCAGCAAGCATGACTTCGAGGTCCTTGTCGGTGATCACTTCTCCTGG
ATCCCGTCCAGTGGTGGATCTGTCCCGCCCCATGCCATCCAAGTGGGCCA
GACTGGCGAGGGTGAGCCCCTGTACGTGGGCCGTGGTTACTTCCAGGGCA
GCCTCACCCCCGGCAAGGTCCATCCCTCGCACCAGTGTTTGTACATCCCC
TACGGCGGACAGGAGCACCGTCTGGAAGCCTATGAAGTGCTGGTCCAGCC
CGAGACGTGGATAGCCTCTAGCGGACGCGGCATTGTTCCCGGAACAGTGG
TTGGCGGACACGACGCCGATGGCGATCAGATCTATGTGGGTCGCGCCTAC
CACGAGGGCGATTTGCTGCCAGCCAAGGTGATCCCCAACAAGGGCTGTGC
CTATGTGCCCTACGGAGGCGGTGAGGTTGTGAAGCACGACTACGAGCTGC
TGGCCGGATACGGGTACGGATGGGTGCACGACAGCCATGGCAATGTGCCC
GGCAATGCCGTTCTCTGCGGCCGCACTTCCGACGGAGAGCCCCTGTTCAT
CGGCCGTGCCCACCACCACGGCAGCCTCACTCCCGGCAAGATCCACCAGT
CACACCATTGCCTCTACATCCCATTCGACGGCGAGGAGGTCCGCATCGAC
CACTACGAGGTCCTGGTCAAGGGCTGAAAGCTTTCTAGACC
BS11345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-PA | 861 | CG13321-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 2043 | CG13321-RB | 544..1406 | 15..877 | 4315 | 100 | Plus |
CG13321-RA | 1060 | CG13321-RA | 103..965 | 15..877 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12953956..12954349 | 22..415 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 12954774..12955075 | 576..877 | 1510 | 100 | Plus |
2R | 25286936 | 2R | 12954499..12954666 | 414..581 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:02:27 has no hits.
BS11345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:14 Download gff for
BS11345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:35:47 Download gff for
BS11345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:44 Download gff for
BS11345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 98..972 | 7..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:38 Download gff for
BS11345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 98..972 | 7..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:38 Download gff for
BS11345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12953956..12954349 | 22..415 | 100 | -> | Plus |
2R | 12954501..12954662 | 416..577 | 100 | -> | Plus |
2R | 12954776..12955082 | 578..887 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:44 Download gff for
BS11345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8841461..8841854 | 22..415 | 100 | -> | Plus |
arm_2R | 8842006..8842167 | 416..577 | 100 | -> | Plus |
arm_2R | 8842281..8842587 | 578..887 | 98 | | Plus |
BS11345.complete Sequence
893 bp assembled on 2006-11-01
GenBank Submission: FJ636832
> BS11345.complete
GAAGTTATCAGTCGACATGGGAGACTACACCTGGATTAGCACCAACGTTT
ACGGATCCCTGCCCCCAGGAGCCATCCTAGCTGGCCACGACTCCGACCAG
GATCCCATCTTTGTGGGCCGTGCCTACCACAATGGAGAGATGCTGCCAGC
GAAGGTGGTGCCCGGCAAGCAGCAGGCCTATGTGCCATGGGGCGGTCAGG
AGATCAGCAAGCATGACTTCGAGGTCCTTGTCGGTGATCACTTCTCCTGG
ATCCCGTCCAGTGGTGGATCTGTCCCGCCCCATGCCATCCAAGTGGGCCA
GACTGGCGAGGGTGAGCCCCTGTACGTGGGCCGTGGTTACTTCCAGGGCA
GCCTCACCCCCGGCAAGGTCCATCCCTCGCACCAGTGTTTGTACATCCCC
TACGGCGGACAGGAGCACCGTCTGGAAGCCTATGAAGTGCTGGTCCAGCC
CGAGACGTGGATAGCCTCTAGCGGACGCGGCATTGTTCCCGGAACAGTGG
TTGGCGGACACGACGCCGATGGCGATCAGATCTATGTGGGTCGCGCCTAC
CACGAGGGCGATTTGCTGCCAGCCAAGGTGATCCCCAACAAGGGCTGTGC
CTATGTGCCCTACGGAGGCGGTGAGGTTGTGAAGCACGACTACGAGCTGC
TGGCCGGATACGGGTACGGATGGGTGCACGACAGCCATGGCAATGTGCCC
GGCAATGCCGTTCTCTGCGGCCGCACTTCCGACGGAGAGCCCCTGTTCAT
CGGCCGTGCCCACCACCACGGCAGCCTCACTCCCGGCAAGATCCACCAGT
CACACCATTGCCTCTACATCCCATTCGACGGCGAGGAGGTCCGCATCGAC
CACTACGAGGTCCTGGTCAAGGGCTGAAAGCTTTCTAGACCAT
BS11345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 861 | CG13321-PB | 1..861 | 17..877 | 4305 | 100 | Plus |
CG13321-RA | 861 | CG13321-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 2043 | CG13321-RB | 544..1406 | 15..877 | 4315 | 100 | Plus |
CG13321-RA | 1060 | CG13321-RA | 103..965 | 15..877 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12953956..12954349 | 22..415 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 12954774..12955075 | 576..877 | 1510 | 100 | Plus |
2R | 25286936 | 2R | 12954499..12954666 | 414..581 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:29 has no hits.
BS11345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:24 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:36 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 95..969 | 7..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:50 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 105..964 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:25 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 95..969 | 7..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:13 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 105..964 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:13 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12953953..12954349 | 17..415 | 98 | -> | Plus |
2R | 12954501..12954662 | 416..577 | 100 | -> | Plus |
2R | 12954776..12955074 | 578..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:50 Download gff for
BS11345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8842281..8842579 | 578..876 | 100 | | Plus |
arm_2R | 8841458..8841854 | 17..415 | 98 | -> | Plus |
arm_2R | 8842006..8842167 | 416..577 | 100 | -> | Plus |
BS11345.pep Sequence
Translation from 16 to 876
> BS11345.pep
MGDYTWISTNVYGSLPPGAILAGHDSDQDPIFVGRAYHNGEMLPAKVVPG
KQQAYVPWGGQEISKHDFEVLVGDHFSWIPSSGGSVPPHAIQVGQTGEGE
PLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLVQPETWIA
SSGRGIVPGTVVGGHDADGDQIYVGRAYHEGDLLPAKVIPNKGCAYVPYG
GGEVVKHDYELLAGYGYGWVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHH
HGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLVKG*
BS11345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-PB | 286 | CG13321-PB | 1..286 | 1..286 | 1596 | 100 | Plus |
CG13321-PA | 286 | CG13321-PA | 1..286 | 1..286 | 1596 | 100 | Plus |
CG44250-PB | 286 | CG44250-PB | 2..285 | 3..285 | 878 | 56.5 | Plus |
CG44250-PC | 297 | CG44250-PC | 13..296 | 3..285 | 878 | 56.5 | Plus |
CG32633-PB | 285 | CG32633-PB | 1..284 | 1..285 | 811 | 53.3 | Plus |