Clone BS11350 Report

Search the DGRC for BS11350

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG15739-RA
Protein status:BS11350.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11350.3prime Sequence

886 bp (761 high quality bases) assembled on 2006-04-18

> BS11350.3prime
ATGGTCTAGAAAGCTTCTAGACACGCGACTTGGGCGCCTCGCCCAGCATC
TGGGCCACATCGGCCACGCTGTCCGCATAGTAGTCCGGTATGCGCTGCGG
ATCCGTCTCGGCCAGGAGCTCCTCCTTGCTGCATCCGCCGCTGAGCACGA
GCAGCGTTTGGAATCCGCACTGGCGTCCAAAGCTAACGTCCTGGGCCAAC
ATATCTCCGATCATGAGCACCCGACTGGGCTGAACGATTTGGTAATGCTC
GACAAGCAGATCACCCAACTCGCGGCCAGGCTTGCCCAACGTAATCGGCT
GCTTGCCACTGGCCTCCACGAGGATGGAGGCGAAGGCTCCCGGACCTACG
ATGTTCACTTCCTTGGCCACCGGTAGCAGGCGATCGGTGGCGCCTTCAAT
GAGCATACACTCCGGATGGCGCAGGTACAGGTGGGCGCGCAGAATCTTCG
GGGAAGTCAGATTGAAGTCCACGTCGATGATGACGGCGCGCACGGGCTCC
TTGCCAAAGATGTGCTCGGCCAGGCTGGCGTAGCTCTCCTCGATGAACTC
GTTGGGCCCGTCCAGGAGCTGGAATCCCGCCTCGCGCAACACCGTCTTGA
ACGACTGGCTGGCGATGATGTAGATGAGTCCCTCGAACTTGATGCTCTGC
AGATAGCTAACGATGGACTTGGCCGGATGCCAAATCTGCTCCGGGTGCAC
CTGCATCCCGATCTTGGCGAAGAGTTTGACGCACTGCTCGGACGTGCGAA
CGCTGTTGTTGGTCAGGAAGGTCAGATGCTTGCCCATCTGCTCGAGAGCG
GGATATCCGTCGGCGGCACGCGGAATGCTCTGCTCAAAGGTCCACAGGAC
GGCATCGATGTCGCTGACCACCCGGTCGAAAGAGTC

BS11350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-PA 927 CG15739-RA 58..927 886..17 4300 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-RB 1407 CG15739-RB 118..988 886..16 4325 99.8 Minus
CG15739-RA 1529 CG15739-RA 240..1110 886..16 4325 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11874386..11874927 557..16 2710 100 Minus
X 23542271 X 11873936..11874265 886..557 1620 99.4 Minus
Blast to na_te.dros performed on 2015-02-10 23:14:53 has no hits.

BS11350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:25 Download gff for BS11350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-PA 58..927 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:01 Download gff for BS11350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-PA 58..927 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:53:27 Download gff for BS11350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 240..1110 16..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:35 Download gff for BS11350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 240..1110 16..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:35 Download gff for BS11350.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11873936..11874265 557..886 99 -> Minus
X 11874387..11874927 16..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:53:27 Download gff for BS11350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11767969..11768298 557..886 99 -> Minus
arm_X 11768420..11768960 16..556 100   Minus

BS11350.5prime Sequence

957 bp (848 high quality bases) assembled on 2006-04-18

> BS11350.5prime
GAAGTTATCAGTCGACATGGCCAAACCCCAGCACATTTTGCAGCTAAGCC
AGGAGCAGCGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGAC
ATCGATGGCGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGA
CGGATATGCCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCA
ACAACAGCGTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATC
GGGATGCAGGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGT
TAGCTATCTGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCA
GCCAGTCGTTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGAC
GGGCCCAACGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACAT
CTTTGGCAAGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATC
TGACTTCCCCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAG
TGTATGCTCATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGA
AGTGAACATCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCA
GTGGCAAGCAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGAT
CTGCTTGTCGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGAT
CGGAGATATGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCC
AAACGCTGCTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCC
GAGACGGATCCGCAGCGCATACCGGACTACTATGCGGACAGCGTGGCCGA
TGTGGCCCAGATGCTGGGCGAGGCGCCCAAGTCGCGTGTCTAGAAGCTTT
CTAGACC

BS11350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-PA 927 CG15739-RA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-RB 1407 CG15739-RB 61..988 17..944 4640 100 Plus
CG15739-RA 1529 CG15739-RA 183..1110 17..944 4640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11874386..11874927 403..944 2710 100 Plus
X 23542271 X 11873881..11874265 19..403 1925 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:24:57 has no hits.

BS11350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:26 Download gff for BS11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-PA 1..927 17..943 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:03 Download gff for BS11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-PA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:29 Download gff for BS11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 183..1110 17..944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:52 Download gff for BS11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 183..1110 17..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:52 Download gff for BS11350.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11873881..11874265 19..403 100 -> Plus
X 11874387..11874927 404..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:29 Download gff for BS11350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11767914..11768298 19..403 100 -> Plus
arm_X 11768420..11768960 404..944 100   Plus

BS11350.complete Sequence

959 bp assembled on 2006-11-01

GenBank Submission: FJ636833

> BS11350.complete
GAAGTTATCAGTCGACATGGCCAAACCCCAGCACATTTTGCAGCTAAGCC
AGGAGCAGCGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGAC
ATCGATGGCGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGA
CGGATATGCCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCA
ACAACAGCGTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATC
GGGATGCAGGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGT
TAGCTATCTGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCA
GCCAGTCGTTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGAC
GGGCCCAACGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACAT
CTTTGGCAAGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATC
TGACTTCCCCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAG
TGTATGCTCATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGA
AGTGAACATCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCA
GTGGCAAGCAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGAT
CTGCTTGTCGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGAT
CGGAGATATGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCC
AAACGCTGCTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCC
GAGACGGATCCGCAGCGCATACCGGACTACTATGCGGACAGCGTGGCCGA
TGTGGCCCAGATGCTGGGCGAGGCGCCCAAGTCGCGTGTCTAGAAGCTTT
CTAGACCAT

BS11350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-RB 927 CG15739-PB 1..927 17..943 4635 100 Plus
CG15739-RA 927 CG15739-PA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-RB 1407 CG15739-RB 61..988 17..944 4640 100 Plus
CG15739-RA 1529 CG15739-RA 183..1110 17..944 4640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11874386..11874927 403..944 2710 100 Plus
X 23542271 X 11873881..11874265 19..403 1925 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:21:01 has no hits.

BS11350.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:34 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:49 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 59..986 17..944 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:46 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 183..1109 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:34 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 59..986 17..944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:49 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
CG15739-RA 183..1109 17..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:49 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
X 11873880..11874265 17..403 99 -> Plus
X 11874387..11874926 404..943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:46 Download gff for BS11350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11767913..11768298 17..403 99 -> Plus
arm_X 11768420..11768959 404..943 100   Plus

BS11350.pep Sequence

Translation from 16 to 942

> BS11350.pep
MAKPQHILQLSQEQRSSVVDSFDRVVSDIDGVLWTFEQSIPRAADGYAAL
EQMGKHLTFLTNNSVRTSEQCVKLFAKIGMQVHPEQIWHPAKSIVSYLQS
IKFEGLIYIIASQSFKTVLREAGFQLLDGPNEFIEESYASLAEHIFGKEP
VRAVIIDVDFNLTSPKILRAHLYLRHPECMLIEGATDRLLPVAKEVNIVG
PGAFASILVEASGKQPITLGKPGRELGDLLVEHYQIVQPSRVLMIGDMLA
QDVSFGRQCGFQTLLVLSGGCSKEELLAETDPQRIPDYYADSVADVAQML
GEAPKSRV*

BS11350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15739-PB 308 CG15739-PB 1..308 1..308 1567 100 Plus
CG15739-PA 308 CG15739-PA 1..308 1..308 1567 100 Plus
CG10352-PB 315 CG10352-PB 1..299 1..297 641 44 Plus
CG2680-PB 305 CG2680-PB 1..305 1..305 491 37.7 Plus
CG5567-PA 330 CG5567-PA 23..318 6..296 378 30.9 Plus