Clone Sequence Records
BS11350.3prime Sequence
886 bp (761 high quality bases) assembled on 2006-04-18
> BS11350.3prime
ATGGTCTAGAAAGCTTCTAGACACGCGACTTGGGCGCCTCGCCCAGCATC
TGGGCCACATCGGCCACGCTGTCCGCATAGTAGTCCGGTATGCGCTGCGG
ATCCGTCTCGGCCAGGAGCTCCTCCTTGCTGCATCCGCCGCTGAGCACGA
GCAGCGTTTGGAATCCGCACTGGCGTCCAAAGCTAACGTCCTGGGCCAAC
ATATCTCCGATCATGAGCACCCGACTGGGCTGAACGATTTGGTAATGCTC
GACAAGCAGATCACCCAACTCGCGGCCAGGCTTGCCCAACGTAATCGGCT
GCTTGCCACTGGCCTCCACGAGGATGGAGGCGAAGGCTCCCGGACCTACG
ATGTTCACTTCCTTGGCCACCGGTAGCAGGCGATCGGTGGCGCCTTCAAT
GAGCATACACTCCGGATGGCGCAGGTACAGGTGGGCGCGCAGAATCTTCG
GGGAAGTCAGATTGAAGTCCACGTCGATGATGACGGCGCGCACGGGCTCC
TTGCCAAAGATGTGCTCGGCCAGGCTGGCGTAGCTCTCCTCGATGAACTC
GTTGGGCCCGTCCAGGAGCTGGAATCCCGCCTCGCGCAACACCGTCTTGA
ACGACTGGCTGGCGATGATGTAGATGAGTCCCTCGAACTTGATGCTCTGC
AGATAGCTAACGATGGACTTGGCCGGATGCCAAATCTGCTCCGGGTGCAC
CTGCATCCCGATCTTGGCGAAGAGTTTGACGCACTGCTCGGACGTGCGAA
CGCTGTTGTTGGTCAGGAAGGTCAGATGCTTGCCCATCTGCTCGAGAGCG
GGATATCCGTCGGCGGCACGCGGAATGCTCTGCTCAAAGGTCCACAGGAC
GGCATCGATGTCGCTGACCACCCGGTCGAAAGAGTC
BS11350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-PA | 927 | CG15739-RA | 58..927 | 886..17 | 4300 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 1407 | CG15739-RB | 118..988 | 886..16 | 4325 | 99.8 | Minus |
CG15739-RA | 1529 | CG15739-RA | 240..1110 | 886..16 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11874386..11874927 | 557..16 | 2710 | 100 | Minus |
X | 23542271 | X | 11873936..11874265 | 886..557 | 1620 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:14:53 has no hits.
BS11350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:25 Download gff for
BS11350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 58..927 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:01 Download gff for
BS11350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 58..927 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:53:27 Download gff for
BS11350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 240..1110 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:35 Download gff for
BS11350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 240..1110 | 16..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:35 Download gff for
BS11350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11873936..11874265 | 557..886 | 99 | -> | Minus |
X | 11874387..11874927 | 16..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:53:27 Download gff for
BS11350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11767969..11768298 | 557..886 | 99 | -> | Minus |
arm_X | 11768420..11768960 | 16..556 | 100 | | Minus |
BS11350.5prime Sequence
957 bp (848 high quality bases) assembled on 2006-04-18
> BS11350.5prime
GAAGTTATCAGTCGACATGGCCAAACCCCAGCACATTTTGCAGCTAAGCC
AGGAGCAGCGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGAC
ATCGATGGCGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGA
CGGATATGCCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCA
ACAACAGCGTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATC
GGGATGCAGGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGT
TAGCTATCTGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCA
GCCAGTCGTTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGAC
GGGCCCAACGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACAT
CTTTGGCAAGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATC
TGACTTCCCCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAG
TGTATGCTCATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGA
AGTGAACATCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCA
GTGGCAAGCAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGAT
CTGCTTGTCGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGAT
CGGAGATATGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCC
AAACGCTGCTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCC
GAGACGGATCCGCAGCGCATACCGGACTACTATGCGGACAGCGTGGCCGA
TGTGGCCCAGATGCTGGGCGAGGCGCCCAAGTCGCGTGTCTAGAAGCTTT
CTAGACC
BS11350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-PA | 927 | CG15739-RA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 1407 | CG15739-RB | 61..988 | 17..944 | 4640 | 100 | Plus |
CG15739-RA | 1529 | CG15739-RA | 183..1110 | 17..944 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11874386..11874927 | 403..944 | 2710 | 100 | Plus |
X | 23542271 | X | 11873881..11874265 | 19..403 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:24:57 has no hits.
BS11350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:26 Download gff for
BS11350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:03 Download gff for
BS11350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:29 Download gff for
BS11350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1110 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:52 Download gff for
BS11350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1110 | 17..944 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:52 Download gff for
BS11350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11873881..11874265 | 19..403 | 100 | -> | Plus |
X | 11874387..11874927 | 404..944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:29 Download gff for
BS11350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11767914..11768298 | 19..403 | 100 | -> | Plus |
arm_X | 11768420..11768960 | 404..944 | 100 | | Plus |
BS11350.complete Sequence
959 bp assembled on 2006-11-01
GenBank Submission: FJ636833
> BS11350.complete
GAAGTTATCAGTCGACATGGCCAAACCCCAGCACATTTTGCAGCTAAGCC
AGGAGCAGCGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGAC
ATCGATGGCGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGA
CGGATATGCCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCA
ACAACAGCGTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATC
GGGATGCAGGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGT
TAGCTATCTGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCA
GCCAGTCGTTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGAC
GGGCCCAACGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACAT
CTTTGGCAAGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATC
TGACTTCCCCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAG
TGTATGCTCATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGA
AGTGAACATCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCA
GTGGCAAGCAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGAT
CTGCTTGTCGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGAT
CGGAGATATGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCC
AAACGCTGCTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCC
GAGACGGATCCGCAGCGCATACCGGACTACTATGCGGACAGCGTGGCCGA
TGTGGCCCAGATGCTGGGCGAGGCGCCCAAGTCGCGTGTCTAGAAGCTTT
CTAGACCAT
BS11350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 927 | CG15739-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
CG15739-RA | 927 | CG15739-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 1407 | CG15739-RB | 61..988 | 17..944 | 4640 | 100 | Plus |
CG15739-RA | 1529 | CG15739-RA | 183..1110 | 17..944 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11874386..11874927 | 403..944 | 2710 | 100 | Plus |
X | 23542271 | X | 11873881..11874265 | 19..403 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:21:01 has no hits.
BS11350.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:34 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:49 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 59..986 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:46 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1109 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:34 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 59..986 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:49 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1109 | 17..943 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:49 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11873880..11874265 | 17..403 | 99 | -> | Plus |
X | 11874387..11874926 | 404..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:46 Download gff for
BS11350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11767913..11768298 | 17..403 | 99 | -> | Plus |
arm_X | 11768420..11768959 | 404..943 | 100 | | Plus |
BS11350.pep Sequence
Translation from 16 to 942
> BS11350.pep
MAKPQHILQLSQEQRSSVVDSFDRVVSDIDGVLWTFEQSIPRAADGYAAL
EQMGKHLTFLTNNSVRTSEQCVKLFAKIGMQVHPEQIWHPAKSIVSYLQS
IKFEGLIYIIASQSFKTVLREAGFQLLDGPNEFIEESYASLAEHIFGKEP
VRAVIIDVDFNLTSPKILRAHLYLRHPECMLIEGATDRLLPVAKEVNIVG
PGAFASILVEASGKQPITLGKPGRELGDLLVEHYQIVQPSRVLMIGDMLA
QDVSFGRQCGFQTLLVLSGGCSKEELLAETDPQRIPDYYADSVADVAQML
GEAPKSRV*
BS11350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-PB | 308 | CG15739-PB | 1..308 | 1..308 | 1567 | 100 | Plus |
CG15739-PA | 308 | CG15739-PA | 1..308 | 1..308 | 1567 | 100 | Plus |
CG10352-PB | 315 | CG10352-PB | 1..299 | 1..297 | 641 | 44 | Plus |
CG2680-PB | 305 | CG2680-PB | 1..305 | 1..305 | 491 | 37.7 | Plus |
CG5567-PA | 330 | CG5567-PA | 23..318 | 6..296 | 378 | 30.9 | Plus |