Clone BS11351 Report

Search the DGRC for BS11351

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCHORD-RA
Protein status:BS11351.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11351.3prime Sequence

874 bp (797 high quality bases) assembled on 2006-04-18

> BS11351.3prime
ATGGTCTAGAAAGCTTTTAATCTAAGTTGTTTGGGCTTTGCATGCTCATT
TCGGAAAGACGGAAACTGGTCTCCGCTTTAATGTCATCCAGGTCGAAGAA
CTCCTCATCGCTCTCCTCCTGCTTTTTCTTCTCTTCCACCTGGCTTTTCT
TAACCACTGGCAGTTTCTTGTTGGGAAAATTTAGGTTGGACCAAGAGCCG
GGCTCCAGCTTGGGCAGTTTAATCTCCACTTTGGTGCCATACATATGCGC
GCTTGCATTGCTCACATTCACAATTCCGCGCAATTCCAGGTCCAGGTCAA
ACCTGGCGTTGTCCTGCTCGGGAAATACCAGGTTGACGTGCAGCCTGATG
GGGTTCAGCTCTATCACGCTCTGACTGTAATCGTATTTTTTAGCATAAAT
GGCCATCACCACATTGGTGGCCGTCTGGTGCCAGTCGTAGCGACATTGCA
CAACCTTTTTGTCGTCGTTCTCCTTGACCCATTTGTGCTCACCGTAGGTA
CAGCCCTTTTGCGCCATAAACTGGGAAAAGTCCGAGGTTCGTTTCTGGCA
GCAGGACCAGAATTTCATGCCCTCGTGAAAGATTGGCACGCCCGGATGGT
AGGTGCACTCGCCAAAGTCGCTGCTGTTACCCGTAAAGGAGTAGGTGCAG
CCGTTATTCTTGCAAGTGGTTCCCACCTCAATGGCGTCGCTGGACTTTTG
AGCAGCCGGCGTTTTGACTGCAAAAACCATGTCTTTCAGGGCAGGAGCCA
CGGTGGGCTGTATAACGGTTAGCGGCGAATCAATGGGCGGACGCGGCAGG
GCTTCCCGGATGGGTGCCCGCACCTCAATTACCTCATCCTTGTCGGACTC
ATCTTTAACAGGTTTCTCCGGCTC

BS11351.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6198-PA 1065 CHORD-RA 208..1065 874..17 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 329..1186 874..17 4290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186746..24187150 874..470 2025 100 Minus
3R 32079331 3R 24187473..24187730 274..17 1290 100 Minus
3R 32079331 3R 24187218..24187414 471..275 985 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:57:20 has no hits.

BS11351.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:28 Download gff for BS11351.3prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-PA 208..1065 17..874 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:05 Download gff for BS11351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6198-PA 208..1065 17..874 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:42 Download gff for BS11351.3prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 329..1186 17..874 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:17 Download gff for BS11351.3prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 329..1186 17..874 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:17 Download gff for BS11351.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24187473..24187730 17..274 100   Minus
3R 24186746..24187150 470..874 100 -> Minus
3R 24187220..24187414 275..469 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:42 Download gff for BS11351.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20012468..20012872 470..874 100 -> Minus
arm_3R 20012942..20013136 275..469 100 -> Minus
arm_3R 20013195..20013452 17..274 100   Minus

BS11351.5prime Sequence

926 bp (803 high quality bases) assembled on 2006-04-18

> BS11351.5prime
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGNACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCG
CATATGTATGGCACCCAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGG
CTCTTGGTCCCACCTAAATTTTTCCA

BS11351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6198-PA 1065 CHORD-RA 1..906 17..922 4461 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 121..1031 16..926 4499 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186599..24187150 77..628 2760 100 Plus
3R 32079331 3R 24187218..24187414 627..823 974 99.5 Plus
3R 32079331 3R 24187473..24187575 824..926 470 97.1 Plus
3R 32079331 3R 24186479..24186540 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:23:05 has no hits.

BS11351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:29 Download gff for BS11351.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-PA 1..908 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:06 Download gff for BS11351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6198-PA 1..908 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:27 Download gff for BS11351.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 121..1029 16..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:32 Download gff for BS11351.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 121..1029 16..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:32 Download gff for BS11351.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24186479..24186540 16..77 100 -> Plus
3R 24186600..24187150 78..628 100 -> Plus
3R 24187220..24187414 629..823 99 -> Plus
3R 24187473..24187573 824..925 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:27 Download gff for BS11351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20012201..20012262 16..77 100 -> Plus
arm_3R 20012322..20012872 78..628 100 -> Plus
arm_3R 20012942..20013136 629..823 99 -> Plus
arm_3R 20013195..20013295 824..925 97   Plus

BS11351.complete Sequence

1097 bp assembled on 2006-11-01

GenBank Submission: FJ636834

> BS11351.complete
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGGACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCG
CATATGTATGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGG
CTCTTGGTCCAACCTAAATTTTCCCAACAAGAAACTGCCAGTGGTTAAGA
AAAGCCAGGTGGAAGAGAAGAAAAAGCAGGAGGAGAGCGATGAGGAGTTC
TTCGACCTGGATGACATTAAAGCGGAGACCAGTTTCCGTCTTTCCGAAAT
GAGCATGCAAAGCCCAAACAACTTAGATTAAAAGCTTTCTAGACCAT

BS11351.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1065 CG6198-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 121..1186 16..1081 5330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186599..24187150 77..628 2760 100 Plus
3R 32079331 3R 24187473..24187730 824..1081 1290 100 Plus
3R 32079331 3R 24187218..24187414 627..823 985 100 Plus
3R 32079331 3R 24186479..24186540 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:28:46 has no hits.

BS11351.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:35 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:50 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 115..1180 16..1081 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:34 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 122..1184 17..1079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:35 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 115..1180 16..1081 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:09 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 122..1184 17..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:09 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24187220..24187414 629..823 100 -> Plus
3R 24187473..24187728 824..1079 100   Plus
3R 24186480..24186540 17..77 100 -> Plus
3R 24186600..24187150 78..628 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:34 Download gff for BS11351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20012202..20012262 17..77 100 -> Plus
arm_3R 20012322..20012872 78..628 100 -> Plus
arm_3R 20012942..20013136 629..823 100 -> Plus
arm_3R 20013195..20013450 824..1079 100   Plus

BS11351.pep Sequence

Translation from 16 to 1080

> BS11351.pep
MEQCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFT
EFLNIKGCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPI
DSPLTVIQPTVAPALKDMVFAVKTPAAQKSSDAIEVGTTCKNNGCTYSFT
GNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQFMAQKGCTYGEHK
WVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVN
LVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNL
NFPNKKLPVVKKSQVEEKKKQEESDEEFFDLDDIKAETSFRLSEMSMQSP
NNLD*

BS11351.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-PA 354 CG6198-PA 1..354 1..354 1928 100 Plus