Clone Sequence Records
BS11351.3prime Sequence
874 bp (797 high quality bases) assembled on 2006-04-18
> BS11351.3prime
ATGGTCTAGAAAGCTTTTAATCTAAGTTGTTTGGGCTTTGCATGCTCATT
TCGGAAAGACGGAAACTGGTCTCCGCTTTAATGTCATCCAGGTCGAAGAA
CTCCTCATCGCTCTCCTCCTGCTTTTTCTTCTCTTCCACCTGGCTTTTCT
TAACCACTGGCAGTTTCTTGTTGGGAAAATTTAGGTTGGACCAAGAGCCG
GGCTCCAGCTTGGGCAGTTTAATCTCCACTTTGGTGCCATACATATGCGC
GCTTGCATTGCTCACATTCACAATTCCGCGCAATTCCAGGTCCAGGTCAA
ACCTGGCGTTGTCCTGCTCGGGAAATACCAGGTTGACGTGCAGCCTGATG
GGGTTCAGCTCTATCACGCTCTGACTGTAATCGTATTTTTTAGCATAAAT
GGCCATCACCACATTGGTGGCCGTCTGGTGCCAGTCGTAGCGACATTGCA
CAACCTTTTTGTCGTCGTTCTCCTTGACCCATTTGTGCTCACCGTAGGTA
CAGCCCTTTTGCGCCATAAACTGGGAAAAGTCCGAGGTTCGTTTCTGGCA
GCAGGACCAGAATTTCATGCCCTCGTGAAAGATTGGCACGCCCGGATGGT
AGGTGCACTCGCCAAAGTCGCTGCTGTTACCCGTAAAGGAGTAGGTGCAG
CCGTTATTCTTGCAAGTGGTTCCCACCTCAATGGCGTCGCTGGACTTTTG
AGCAGCCGGCGTTTTGACTGCAAAAACCATGTCTTTCAGGGCAGGAGCCA
CGGTGGGCTGTATAACGGTTAGCGGCGAATCAATGGGCGGACGCGGCAGG
GCTTCCCGGATGGGTGCCCGCACCTCAATTACCTCATCCTTGTCGGACTC
ATCTTTAACAGGTTTCTCCGGCTC
BS11351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6198-PA | 1065 | CHORD-RA | 208..1065 | 874..17 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 329..1186 | 874..17 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186746..24187150 | 874..470 | 2025 | 100 | Minus |
3R | 32079331 | 3R | 24187473..24187730 | 274..17 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 24187218..24187414 | 471..275 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:57:20 has no hits.
BS11351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:28 Download gff for
BS11351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-PA | 208..1065 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:05 Download gff for
BS11351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6198-PA | 208..1065 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:42 Download gff for
BS11351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 329..1186 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:17 Download gff for
BS11351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 329..1186 | 17..874 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:17 Download gff for
BS11351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24187473..24187730 | 17..274 | 100 | | Minus |
3R | 24186746..24187150 | 470..874 | 100 | -> | Minus |
3R | 24187220..24187414 | 275..469 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:42 Download gff for
BS11351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20012468..20012872 | 470..874 | 100 | -> | Minus |
arm_3R | 20012942..20013136 | 275..469 | 100 | -> | Minus |
arm_3R | 20013195..20013452 | 17..274 | 100 | | Minus |
BS11351.5prime Sequence
926 bp (803 high quality bases) assembled on 2006-04-18
> BS11351.5prime
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGNACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCG
CATATGTATGGCACCCAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGG
CTCTTGGTCCCACCTAAATTTTTCCA
BS11351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6198-PA | 1065 | CHORD-RA | 1..906 | 17..922 | 4461 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 121..1031 | 16..926 | 4499 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186599..24187150 | 77..628 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 24187218..24187414 | 627..823 | 974 | 99.5 | Plus |
3R | 32079331 | 3R | 24187473..24187575 | 824..926 | 470 | 97.1 | Plus |
3R | 32079331 | 3R | 24186479..24186540 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:23:05 has no hits.
BS11351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:29 Download gff for
BS11351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-PA | 1..908 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:06 Download gff for
BS11351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6198-PA | 1..908 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:27 Download gff for
BS11351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 121..1029 | 16..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:32 Download gff for
BS11351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 121..1029 | 16..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:32 Download gff for
BS11351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24186479..24186540 | 16..77 | 100 | -> | Plus |
3R | 24186600..24187150 | 78..628 | 100 | -> | Plus |
3R | 24187220..24187414 | 629..823 | 99 | -> | Plus |
3R | 24187473..24187573 | 824..925 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:27 Download gff for
BS11351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20012201..20012262 | 16..77 | 100 | -> | Plus |
arm_3R | 20012322..20012872 | 78..628 | 100 | -> | Plus |
arm_3R | 20012942..20013136 | 629..823 | 99 | -> | Plus |
arm_3R | 20013195..20013295 | 824..925 | 97 | | Plus |
BS11351.complete Sequence
1097 bp assembled on 2006-11-01
GenBank Submission: FJ636834
> BS11351.complete
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGGACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCG
CATATGTATGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGG
CTCTTGGTCCAACCTAAATTTTCCCAACAAGAAACTGCCAGTGGTTAAGA
AAAGCCAGGTGGAAGAGAAGAAAAAGCAGGAGGAGAGCGATGAGGAGTTC
TTCGACCTGGATGACATTAAAGCGGAGACCAGTTTCCGTCTTTCCGAAAT
GAGCATGCAAAGCCCAAACAACTTAGATTAAAAGCTTTCTAGACCAT
BS11351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1065 | CG6198-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 121..1186 | 16..1081 | 5330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186599..24187150 | 77..628 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 24187473..24187730 | 824..1081 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 24187218..24187414 | 627..823 | 985 | 100 | Plus |
3R | 32079331 | 3R | 24186479..24186540 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:28:46 has no hits.
BS11351.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:35 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:50 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 115..1180 | 16..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:34 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 122..1184 | 17..1079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:35 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 115..1180 | 16..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:09 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 122..1184 | 17..1079 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:09 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24187220..24187414 | 629..823 | 100 | -> | Plus |
3R | 24187473..24187728 | 824..1079 | 100 | | Plus |
3R | 24186480..24186540 | 17..77 | 100 | -> | Plus |
3R | 24186600..24187150 | 78..628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:34 Download gff for
BS11351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20012202..20012262 | 17..77 | 100 | -> | Plus |
arm_3R | 20012322..20012872 | 78..628 | 100 | -> | Plus |
arm_3R | 20012942..20013136 | 629..823 | 100 | -> | Plus |
arm_3R | 20013195..20013450 | 824..1079 | 100 | | Plus |
BS11351.pep Sequence
Translation from 16 to 1080
> BS11351.pep
MEQCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFT
EFLNIKGCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPI
DSPLTVIQPTVAPALKDMVFAVKTPAAQKSSDAIEVGTTCKNNGCTYSFT
GNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQFMAQKGCTYGEHK
WVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVN
LVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNL
NFPNKKLPVVKKSQVEEKKKQEESDEEFFDLDDIKAETSFRLSEMSMQSP
NNLD*
BS11351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-PA | 354 | CG6198-PA | 1..354 | 1..354 | 1928 | 100 | Plus |