Clone Sequence Records
BS11353.3prime Sequence
904 bp (814 high quality bases) assembled on 2006-04-18
> BS11353.3prime
ATGGTCTAGAAAGCTTTCATCCCATTGAGAAGAAGGACAACCGGAAGGCC
ATTTCGACTATGTTCTGGGGAACATCGGACCGGTGACACACGTACACTTC
CTTGGCTGGCGACTGAAAGAGACGACCAACCACCACGAAGCGACTGCTCG
TCGAGGATTGGGATTGCCCGTCCGACTTGGGTTGCGTGCTGACCTCCAGG
ATCATGCCGTGCTCCTTGACCAGCGACACTGTGTGGCTACTGTGCCCGTT
CGAGTTCGTCTGTGCTCTCGAGGATTCCGATAGATGCCTGCGATAGTGCT
TGGATTTCTGCAGCACGGCGTGGATTATGTGACACGCCTGACGAATCTCG
GAGAGGTAGTTGGAGTTCTCGGAGCTGTCGGTAAATGGCGCAAACAAGGA
CCCATTGGCTATGTCAATGTAGACGTAGTGCAGAACGGAATTCTTCCAGC
CAGCGGATATCTTGACCGGCACCACGTTGTTGATCTCCTTCCACATGGAC
TCTGTCATTTGGCTCTGACTGTGGCTCTCGGCCCCGAGATTCAGTCCATA
GTGAAGTGGATGCTGTACGGCGAAGTTCTCCCAGTCGGAACCGCTGTCTG
AGTCCTCGGCAGTACCATGGATGGGGGTCAATCGCCTGCGACAGGACTCG
TCCTCACTGGGAGTCAGACTATGTATGGAAGACCCACCCAGGGACGAGCA
CAGTTGGGCTTCCTCCTCCACCGAAGGACTCAGCACGGTTAGCTTCTGCT
TGAGGAAGGACTCCAGTCGGTTGTTCGGCTCCTTCTCCTGATCTCTACTC
TCGCTGGCAGTGGCGTCCAGCACCTCGGGTCTCTTATTGGAAACGGACCA
GAACATGGCCAGGGATTCAATGCCGCACTGTACTAGGTGGTCCAGCGTCT
CTTG
BS11353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16993-PA | 2610 | in-RA | 1723..2610 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 3062 | CG16993-RA | 1841..2728 | 904..17 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20369038..20369925 | 904..17 | 4440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 2405..2433 | 490..462 | 109 | 86.2 | Minus |
BS11353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:06:30 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:08 Download gff for
BS11353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16993-PA | 1723..2610 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:58:43 Download gff for
BS11353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 1841..2739 | 6..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:57:05 Download gff for
BS11353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 1841..2739 | 6..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:57:05 Download gff for
BS11353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20369038..20369936 | 6..904 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:58:43 Download gff for
BS11353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20362138..20363036 | 6..904 | 99 | | Minus |
BS11353.5prime Sequence
958 bp (873 high quality bases) assembled on 2006-04-18
> BS11353.5prime
GAAGTTATCAGTCGACATGCGCAAATCGCCGGCCAGCCTGCCGTCGGAGG
CCTTCTCCAGTTCGAACTCCTCGCTGAGCAACTCGTACAGCGATGGCAGC
GACCTGGCCAACTGGGAGGAGTACGTGTCCACAGACGGCAGTCTCTTCTA
CATGGAGTATGTGCGATGTGAGAAGACTGGCGTCTCGGCAGAGCGGCGGG
TGGAGTTCATGCGTCGATCGCTGCGCCTGGGAAAGAAGTCGTCGCGTCGC
CAGCCGCACAGCAATAATCAGAATCAGAGTCAGAACCAAAACCAGTCCCA
CGGCCCGAGCAGGTTGGATAGCCAGACGGAGCCGCAAGAGTTCCGCTTCT
CACAGTTCAAGACGGCTGCCCCCGATCCCAAGAAACTGGATCTGGTGATC
ACAGCCGCTGATCGCTTCCGTTTCGGACGACGATCCACGGCGGTGGAGTC
CATACTGGGCTTCCGGGTCCTGCCCTTTCCGGACCAACCAGAATGCCTGA
TGGTCGATGGGTTCGTTCACGATGTGAGTGCGCTGCAGCACGGCATCAAG
CGGGGAGATTGGTTTAGATCCCTGAATGGCATAGAGGTGTACGCCAGCAA
TGTGGATGAGTTGCTCAAGCAGTTCGTGGAGCCCACTCAGGTGTGCCTAG
GCTTCCAGTCGTGCGGTGCGGCCAGTGCAGTTTCGCCCACCGATCCGGGG
TATAATCGAAATGTCCGCGAGGAGCAGGTGTGCAAGGTGGAGAACTTTCC
CATGTTCACGGAGAAGTTTGAGCAGATGTTGATAACGGAGGGGAACTTCG
GTATTCCCGGTAGTTCCGTGGACATAAGAATGCCCTTTGCTATGCTGCTA
CTCCCACCGGAGTGCTATCAGCATGAACAGCAACAGGATTCCCTCTACTA
CTTTCCGGAAATCCCCGACAACTTCCTATTCAAGGGCCCGTGGGAGTTTC
CTCACCCT
BS11353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16993-PA | 2610 | in-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 3062 | CG16993-RA | 119..1059 | 17..958 | 4685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20367316..20368256 | 17..958 | 4660 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:32:17 has no hits.
BS11353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:06:31 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:09 Download gff for
BS11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16993-PA | 1..941 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:44 Download gff for
BS11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 112..1059 | 11..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:37 Download gff for
BS11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 112..1059 | 11..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:37 Download gff for
BS11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20367309..20368256 | 11..958 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:44 Download gff for
BS11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20360409..20361356 | 11..958 | 99 | | Plus |
BS11353.complete Sequence
2642 bp assembled on 2010-05-13
GenBank Submission: KX804873
> BS11353.complete
GAAGTTATCAGTCGACATGCGCAAATCGCCGGCCAGCCTGCCGTCGGAGG
CCTTCTCCAGTTCGAACTCCTCGCTGAGCAACTCGTACAGCGATGGCAGC
GACCTGGCCAACTGGGAGGAGTACGTGTCCACAGACGGCAGTCTCTTCTA
CATGGAGTATGTGCGATGTGAGAAGACTGGCGTCTCGGCAGAGCGGCGGG
TGGAGTTCATGCGTCGATCGCTGCGCCTGGGAAAGAAGTCGTCGCGTCGC
CAGCCGCACAGCAATAATCAGAATCAGAGTCAGAACCAAAACCAGTCCCA
CGGCCCGAGCAGGTTGGATAGCCAGACGGAGCCGCAAGAGTTCCGCTTCT
CACAGTTCAAGACGGCTGCCCCCGATCCCAAGAAACTGGATCTGGTGATC
ACAGCCGCTGATCGCTTCCGTTTCGGACGACGATCCACGGCGGTGGAGTC
CATACTGGGCTTCCGGGTCCTGCCCTTTCCGGACCAACCAGAATGCCTGA
TGGTCGATGGGTTCGTTCACGATGTGAGTGCGCTGCAGCACGGCATCAAG
CGGGGAGATTGGTTTAGATCCCTGAATGGCATAGAGGTGTACGCCAGCAA
TGTGGATGAGTTGCTCAAGCAGTTCGTGGAGCCCACTCAGGTGTGCCTAG
GCTTCCAGTCGTGCGGTGCGGCCAGTGCAGTTTCGCCCACCGATCCGGGG
TATAATCGAAATGTCCGCGAGGAGCAGGTGTGCAAGGTGGAGAACTTTCC
CATGTTCACGGAGAAGTTTGAGCAGATGTTGATAACGGAGGGGAACTTCG
GTATTCCCGGTAGTTCCGTGGACATAAGAATGCCCTTTGCTATGCTGCTA
CTCCCACCGGAGTGCTATCAGCATGAACAGCAACAGGATTCCCTCTACTA
CTTTCCGGAAATCCCCGACAACTTCCTATTCAAGGCCCGTGGGAGTTTCC
TCACCCTGCACGCCGTACTCAGTGAACTGCACACCCAGCCGCTGAGTTCA
AGGCTGCTGGTGGATCAGGTGCAATACCACGTCAACTACCGCCAACTGAA
TGGGTTCCTAGTCCTCTTCGCCTACGCCGGAGGACTCTGCTGTGCGGCGG
AGTGCAGCCTGCGATCGGATGAGCTAATCGGATACATACGCTTCTCTCTG
CCGGGCTTGGTCCTGGAGAGCTTTAATCAGGAGAGAGAGCCGGGGAATAG
TTCGAGACTGAAGCTGTTCCTTCGACACTTTTGCGAAATCCAGAGAACCC
GGCTCGTAGCCAGATGCCATGGTCATATTCGTTTCGAGGAGCTCCTGGGC
CAATCCCGCAGCCTGCCACTGCCAAAGGAAGCGCAGCTGCGCATCTTTGA
TGCTCTGAGTGAAATGGAGGCCATGGACTATCGCAACTGGAACGACGAGC
CACTCACCACCCATCGCGAGTTCTTCATCTACGGCAGTGCGCTGTACTAC
GATGGCTTCCTGGTGGCCAGCCTGCTGCCACCGGAAGTGAGGGTGAGTGT
AGAAGGATTCCTGCGCTGCCGCGGAATCTTCGAGTTGCTCGGAGCTGCTC
CGGGAATCAAAGTTCGCGAGATGTACGTGTGGGAGGAGATAGTGTTGCCC
AGTGCCACAGGGCGATATTTCCTTACCATCTGCACCAAGAACCACTTGAG
TCTGGCCGTGATCTTGAAGATCTTCGATGCTCCAGACATGGCGCCGGATG
CGGTGGTGGGTCCATCGCTCTTTTACATCGAGGAGATTCAAGAGACGCTG
GACCACCTAGTACAGTGCGGCATTGAATCCCTGGCCATGTTCTGGTCCGT
TTCCAATAAGAGACCCGAGGTGCTGGACGCCACTGCCAGCGAGAGTAGAG
ATCAGGAGAAGGAGCCGAACAACCGACTGGAGTCCTTCCTCAAGCAGAAG
CTAACCGTGCTGAGTCCTTCGGTGGAGGAGGAAGCCCAACTGTGCTCGTC
CCTGGGTGGGTCTTCCATACATAGTCTGACTCCCAGTGAGGACGAGTCCT
GTCGCAGGCGATTGACCCCCATCCATGGTACTGCCGAGGACTCAGACAGC
GGTTCCGACTGGGAGAACTTCGCCGTACAGCATCCACTTCACTATGGACT
GAATCTCGGGGCCGAGAGCCACAGTCAGAGCCAAATGACAGAGTCCATGT
GGAAGGAGATCAACAACGTGGTGCCGGTCAAGATATCCGCTGGCTGGAAG
AATTCCGTTCTGCACTACGTCTACATTGACATAGCCAATGGGTCCTTGTT
TGCGCCATTTACCGACAGCTCCGAGAACTCCAACTACCTCTCCGAGATTC
GTCAGGCGTGTCACATAATCCACGCCGTGCTGCAGAAATCCAAGCACTAT
CGCAGGCATCTATCGGAATCCTCGAGAGCACAGACGAACTCGAACGGGCA
CAGTAGCCACACAGTGTCGCTGGTCAAGGAGCACGGCATGATCCTGGAGG
TCAGCACGCAACCCAAGTCGGACGGGCAATCCCAATCCTCGACGAGCAGT
CGCTTCGTGGTGGTTGGTCGTCTCTTTCAGTCGCCAGCCAAGGAAGTGTA
CGTGTGTCACCGGTCCGATGTTCCCCAGAACATAGTCGAAATGGCCTTCC
GGTTGTCCTTCTTCTCAATGGGATGAAAGCTTTCTAGACCAT
BS11353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 2610 | CG16993-PA | 1..2610 | 17..2626 | 13050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 3062 | CG16993-RA | 119..2728 | 17..2626 | 13050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20367316..20369925 | 17..2626 | 13050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:43 has no hits.
BS11353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:17 Download gff for
BS11353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 117..2725 | 17..2625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:50 Download gff for
BS11353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 119..2727 | 17..2625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:02 Download gff for
BS11353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 119..2727 | 17..2625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:02 Download gff for
BS11353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20367316..20369924 | 17..2625 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:50 Download gff for
BS11353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20360416..20363024 | 17..2625 | 100 | | Plus |
BS11353.pep Sequence
Translation from 16 to 2625
> BS11353.pep
MRKSPASLPSEAFSSSNSSLSNSYSDGSDLANWEEYVSTDGSLFYMEYVR
CEKTGVSAERRVEFMRRSLRLGKKSSRRQPHSNNQNQSQNQNQSHGPSRL
DSQTEPQEFRFSQFKTAAPDPKKLDLVITAADRFRFGRRSTAVESILGFR
VLPFPDQPECLMVDGFVHDVSALQHGIKRGDWFRSLNGIEVYASNVDELL
KQFVEPTQVCLGFQSCGAASAVSPTDPGYNRNVREEQVCKVENFPMFTEK
FEQMLITEGNFGIPGSSVDIRMPFAMLLLPPECYQHEQQQDSLYYFPEIP
DNFLFKARGSFLTLHAVLSELHTQPLSSRLLVDQVQYHVNYRQLNGFLVL
FAYAGGLCCAAECSLRSDELIGYIRFSLPGLVLESFNQEREPGNSSRLKL
FLRHFCEIQRTRLVARCHGHIRFEELLGQSRSLPLPKEAQLRIFDALSEM
EAMDYRNWNDEPLTTHREFFIYGSALYYDGFLVASLLPPEVRVSVEGFLR
CRGIFELLGAAPGIKVREMYVWEEIVLPSATGRYFLTICTKNHLSLAVIL
KIFDAPDMAPDAVVGPSLFYIEEIQETLDHLVQCGIESLAMFWSVSNKRP
EVLDATASESRDQEKEPNNRLESFLKQKLTVLSPSVEEEAQLCSSLGGSS
IHSLTPSEDESCRRRLTPIHGTAEDSDSGSDWENFAVQHPLHYGLNLGAE
SHSQSQMTESMWKEINNVVPVKISAGWKNSVLHYVYIDIANGSLFAPFTD
SSENSNYLSEIRQACHIIHAVLQKSKHYRRHLSESSRAQTNSNGHSSHTV
SLVKEHGMILEVSTQPKSDGQSQSSTSSRFVVVGRLFQSPAKEVYVCHRS
DVPQNIVEMAFRLSFFSMG*
BS11353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-PA | 869 | CG16993-PA | 1..869 | 1..869 | 4528 | 100 | Plus |
