Clone BS11354 Report

Search the DGRC for BS11354

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCcp84Ag-RA
Protein status:BS11354.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11354.3prime Sequence

606 bp (605 high quality bases) assembled on 2006-04-18

> BS11354.3prime
ATGGTCTAGAAAGCTTTCAATAGGCGTACGAGATAAGAGGCGAAGCGAAC
TGGGTCTTGACGATGGCGGGTCCAGCGGCGACCAGAGGAGCGGCCTTGAC
GACGGGCGCGGGGGCGGCGTAGGCGAGGGGAGCTGGGGCGGCGGCGTAGG
CGAGAGGGGCTGGGGCGGCGGCGTAGGTGGTGGTCAGGGGGGCGGCACGG
ACCACGGGGGCAGCGACGGCGGCACGGACAACTGGGGCTGGAGCGGCAAC
GACGGCAGCAGGAGCGGCGGCAACGGCGGCCACCAGGGGCTCACGGCGCA
CCACTGCGTTGAATCCGTTGATGGGATCGGCGGTGTAGTCCACAATGCGA
CGGTAGCCATCGGCGTCGTTCAGCGAGTACTGGCCCTGGACAACGTCGCC
CTCGCGGGTCTCCACCTGGGTCTTCGAGTCACCAGAGATGGCGTCCTTGA
CGTCATAGCCGTAGGTGTACTGAGGATGGGGATCGTACTCCTCAACCTGG
GCCACGGCGGCCAGTGGAGCGGCGGCGGGAATGATGCCAGCGCTGGCCAC
GGCGATGCAGGCGGCGAAAAGAATGGTGAATTTGAATGCCATGTCGACTG
ATAACT

BS11354.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2342-PA 576 Ccp84Ag-RA 1..576 592..17 2880 100 Minus
CG2341-PA 600 Ccp84Ad-RA 316..347 337..306 160 100 Minus
CG2360-PA 618 Ccp84Aa-RA 316..347 337..306 160 100 Minus
CG1252-PA 666 Ccp84Ab-RA 316..347 337..306 160 100 Minus
CG31878-PB 321 CG31878-RB 239..269 354..324 155 100 Minus
CG31878-PA 441 CG31878-RA 359..389 354..324 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ag-RA 1097 CG2342-RA 47..624 592..15 2890 100 Minus
Ccp84Ad-RA 735 CG2341-RA 226..437 493..282 460 81.1 Minus
Cpr5C-RA 605 CG4052-RA 219..413 494..300 360 79 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6687001..6687566 580..15 2830 100 Minus
3R 32079331 3R 6693018..6693229 493..282 460 81.1 Minus
X 23542271 X 5804958..5805152 494..300 360 79 Minus
3R 32079331 3R 6689782..6689969 306..493 340 78.7 Plus
3R 32079331 3R 6691251..6691450 285..484 325 77.5 Plus
3R 32079331 3R 6695740..6695935 283..478 290 76.5 Plus
3L 28110227 3L 4208409..4208554 290..435 280 79.5 Plus
3R 32079331 3R 6704436..6704572 418..282 235 78.1 Minus
3R 32079331 3R 6702373..6702509 282..418 220 77.4 Plus
Blast to na_te.dros performed on 2015-02-09 04:02:26 has no hits.

BS11354.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:32 Download gff for BS11354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2342-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:11 Download gff for BS11354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2342-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:00:38 Download gff for BS11354.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..631 6..592 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:30:39 Download gff for BS11354.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..631 6..592 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:30:39 Download gff for BS11354.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6687001..6687573 6..580 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:00:38 Download gff for BS11354.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2512723..2513295 6..580 99   Minus

BS11354.5prime Sequence

606 bp (605 high quality bases) assembled on 2006-04-18

> BS11354.5prime
GAAGTTATCAGTCGACATGGCATTCAAATTCACCATTCTTTTCGCCGCCT
GCATCGCCGTGGCCAGCGCTGGCATCATTCCCGCCGCCGCTCCACTGGCC
GCCGTGGCCCAGGTTGAGGAGTACGATCCCCATCCTCAGTACACCTACGG
CTATGACGTCAAGGACGCCATCTCTGGTGACTCGAAGACCCAGGTGGAGA
CCCGCGAGGGCGACGTTGTCCAGGGCCAGTACTCGCTGAACGACGCCGAT
GGCTACCGTCGCATTGTGGACTACACCGCCGATCCCATCAACGGATTCAA
CGCAGTGGTGCGCCGTGAGCCCCTGGTGGCCGCCGTTGCCGCCGCTCCTG
CTGCCGTCGTTGCCGCTCCAGCCCCAGTTGTCCGTGCCGCCGTCGCTGCC
CCCGTGGTCCGTGCCGCCCCCCTGACCACCACCTACGCCGCCGCCCCAGC
CCCTCTCGCCTACGCCGCCGCCCCAGCTCCCCTCGCCTACGCCGCCCCCG
CGCCCGTCGTCAAGGCCGCTCCTCTGGTCGCCGCTGGACCCGCCATCGTC
AAGACCCAGTTCGCTTCGCCTCTTATCTCGTACGCCTATTGAAAGCTTTC
TAGACC

BS11354.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2342-PA 576 Ccp84Ag-RA 1..576 17..592 2880 100 Plus
CG2341-PA 600 Ccp84Ad-RA 316..347 272..303 160 100 Plus
CG2360-PA 618 Ccp84Aa-RA 316..347 272..303 160 100 Plus
CG1252-PA 666 Ccp84Ab-RA 316..347 272..303 160 100 Plus
CG31878-PB 321 CG31878-RB 239..269 255..285 155 100 Plus
CG31878-PA 441 CG31878-RA 359..389 255..285 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ag-RA 1097 CG2342-RA 47..624 17..594 2890 100 Plus
Ccp84Ad-RA 735 CG2341-RA 226..437 116..327 460 81.1 Plus
Cpr5C-RA 605 CG4052-RA 219..413 115..309 360 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6687001..6687566 29..594 2830 100 Plus
3R 32079331 3R 6693018..6693229 116..327 460 81.1 Plus
X 23542271 X 5804958..5805152 115..309 360 79 Plus
3R 32079331 3R 6689782..6689969 303..116 340 78.7 Minus
3R 32079331 3R 6691251..6691450 324..125 325 77.5 Minus
3R 32079331 3R 6695740..6695935 326..131 290 76.5 Minus
3L 28110227 3L 4208409..4208554 319..174 280 79.5 Minus
3R 32079331 3R 6704436..6704572 191..327 235 78.1 Plus
3R 32079331 3R 6702373..6702509 327..191 220 77.4 Minus
Blast to na_te.dros performed on 2015-02-11 11:03:05 has no hits.

BS11354.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:34 Download gff for BS11354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2342-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:13 Download gff for BS11354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2342-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:52 Download gff for BS11354.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..631 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:48 Download gff for BS11354.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..631 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:48 Download gff for BS11354.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6687001..6687573 29..603 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:52 Download gff for BS11354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2512723..2513295 29..603 99   Plus

BS11354.complete Sequence

608 bp assembled on 2006-11-01

GenBank Submission: FJ636835

> BS11354.complete
GAAGTTATCAGTCGACATGGCATTCAAATTCACCATTCTTTTCGCCGCCT
GCATCGCCGTGGCCAGCGCTGGCATCATTCCCGCCGCCGCTCCACTGGCC
GCCGTGGCCCAGGTTGAGGAGTACGATCCCCATCCTCAGTACACCTACGG
CTATGACGTCAAGGACGCCATCTCTGGTGACTCGAAGACCCAGGTGGAGA
CCCGCGAGGGCGACGTTGTCCAGGGCCAGTACTCGCTGAACGACGCCGAT
GGCTACCGTCGCATTGTGGACTACACCGCCGATCCCATCAACGGATTCAA
CGCAGTGGTGCGCCGTGAGCCCCTGGTGGCCGCCGTTGCCGCCGCTCCTG
CTGCCGTCGTTGCCGCTCCAGCCCCAGTTGTCCGTGCCGCCGTCGCTGCC
CCCGTGGTCCGTGCCGCCCCCCTGACCACCACCTACGCCGCCGCCCCAGC
CCCTCTCGCCTACGCCGCCGCCCCAGCTCCCCTCGCCTACGCCGCCCCCG
CGCCCGTCGTCAAGGCCGCTCCTCTGGTCGCCGCTGGACCCGCCATCGTC
AAGACCCAGTTCGCTTCGCCTCTTATCTCGTACGCCTATTGAAAGCTTTC
TAGACCAT

BS11354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ag-RA 576 CG2342-PA 1..576 17..592 2880 100 Plus
Ccp84Ad-RA 600 CG2341-PA 160..371 116..327 460 81.1 Plus
Cpr5C-RA 438 CG4052-PA 165..359 115..309 360 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ag-RA 1097 CG2342-RA 47..624 17..594 2890 100 Plus
Ccp84Ad-RA 735 CG2341-RA 226..437 116..327 460 81.1 Plus
Cpr5C-RA 605 CG4052-RA 219..413 115..309 360 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6687001..6687566 29..594 2830 100 Plus
3R 32079331 3R 6693018..6693229 116..327 460 81.1 Plus
X 23542271 X 5804958..5805152 115..309 360 79 Plus
3R 32079331 3R 6689782..6689969 303..116 340 78.7 Minus
3R 32079331 3R 6691251..6691450 324..125 325 77.5 Minus
3R 32079331 3R 6695740..6695935 326..131 290 76.5 Minus
3L 28110227 3L 4208409..4208554 319..174 280 79.5 Minus
3L 28110227 3L 4215996..4216131 176..311 245 78.7 Plus
3R 32079331 3R 6704436..6704572 191..327 235 78.1 Plus
2L 23513712 2L 11945256..11945348 191..283 225 82.8 Plus
3R 32079331 3R 6702373..6702509 327..191 220 77.4 Minus
2L 23513712 2L 9932709..9932817 326..218 215 79.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:46:52 has no hits.

BS11354.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:31 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:45 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..631 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:59 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..621 17..591 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:31 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..631 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:45 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ag-RA 47..621 17..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:45 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6687001..6687563 29..591 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:59 Download gff for BS11354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2512723..2513285 29..591 100   Plus

BS11354.pep Sequence

Translation from 16 to 591

> BS11354.pep
MAFKFTILFAACIAVASAGIIPAAAPLAAVAQVEEYDPHPQYTYGYDVKD
AISGDSKTQVETREGDVVQGQYSLNDADGYRRIVDYTADPINGFNAVVRR
EPLVAAVAAAPAAVVAAPAPVVRAAVAAPVVRAAPLTTTYAAAPAPLAYA
AAPAPLAYAAPAPVVKAAPLVAAGPAIVKTQFASPLISYAY*

BS11354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ag-PA 191 CG2342-PA 1..191 1..191 952 100 Plus
Ccp84Ad-PA 199 CG2341-PA 1..197 1..189 434 50.5 Plus
Ccp84Ab-PA 221 CG1252-PA 1..219 1..189 427 49.8 Plus
Ccp84Ae-PA 208 CG1330-PA 1..207 1..181 426 51.7 Plus
Ccp84Aa-PA 205 CG2360-PA 1..205 1..175 409 52.2 Plus