Clone Sequence Records
BS11354.3prime Sequence
606 bp (605 high quality bases) assembled on 2006-04-18
> BS11354.3prime
ATGGTCTAGAAAGCTTTCAATAGGCGTACGAGATAAGAGGCGAAGCGAAC
TGGGTCTTGACGATGGCGGGTCCAGCGGCGACCAGAGGAGCGGCCTTGAC
GACGGGCGCGGGGGCGGCGTAGGCGAGGGGAGCTGGGGCGGCGGCGTAGG
CGAGAGGGGCTGGGGCGGCGGCGTAGGTGGTGGTCAGGGGGGCGGCACGG
ACCACGGGGGCAGCGACGGCGGCACGGACAACTGGGGCTGGAGCGGCAAC
GACGGCAGCAGGAGCGGCGGCAACGGCGGCCACCAGGGGCTCACGGCGCA
CCACTGCGTTGAATCCGTTGATGGGATCGGCGGTGTAGTCCACAATGCGA
CGGTAGCCATCGGCGTCGTTCAGCGAGTACTGGCCCTGGACAACGTCGCC
CTCGCGGGTCTCCACCTGGGTCTTCGAGTCACCAGAGATGGCGTCCTTGA
CGTCATAGCCGTAGGTGTACTGAGGATGGGGATCGTACTCCTCAACCTGG
GCCACGGCGGCCAGTGGAGCGGCGGCGGGAATGATGCCAGCGCTGGCCAC
GGCGATGCAGGCGGCGAAAAGAATGGTGAATTTGAATGCCATGTCGACTG
ATAACT
BS11354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2342-PA | 576 | Ccp84Ag-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
CG2341-PA | 600 | Ccp84Ad-RA | 316..347 | 337..306 | 160 | 100 | Minus |
CG2360-PA | 618 | Ccp84Aa-RA | 316..347 | 337..306 | 160 | 100 | Minus |
CG1252-PA | 666 | Ccp84Ab-RA | 316..347 | 337..306 | 160 | 100 | Minus |
CG31878-PB | 321 | CG31878-RB | 239..269 | 354..324 | 155 | 100 | Minus |
CG31878-PA | 441 | CG31878-RA | 359..389 | 354..324 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ag-RA | 1097 | CG2342-RA | 47..624 | 592..15 | 2890 | 100 | Minus |
Ccp84Ad-RA | 735 | CG2341-RA | 226..437 | 493..282 | 460 | 81.1 | Minus |
Cpr5C-RA | 605 | CG4052-RA | 219..413 | 494..300 | 360 | 79 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6687001..6687566 | 580..15 | 2830 | 100 | Minus |
3R | 32079331 | 3R | 6693018..6693229 | 493..282 | 460 | 81.1 | Minus |
X | 23542271 | X | 5804958..5805152 | 494..300 | 360 | 79 | Minus |
3R | 32079331 | 3R | 6689782..6689969 | 306..493 | 340 | 78.7 | Plus |
3R | 32079331 | 3R | 6691251..6691450 | 285..484 | 325 | 77.5 | Plus |
3R | 32079331 | 3R | 6695740..6695935 | 283..478 | 290 | 76.5 | Plus |
3L | 28110227 | 3L | 4208409..4208554 | 290..435 | 280 | 79.5 | Plus |
3R | 32079331 | 3R | 6704436..6704572 | 418..282 | 235 | 78.1 | Minus |
3R | 32079331 | 3R | 6702373..6702509 | 282..418 | 220 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-09 04:02:26 has no hits.
BS11354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:32 Download gff for
BS11354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2342-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:11 Download gff for
BS11354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2342-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:00:38 Download gff for
BS11354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..631 | 6..592 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:30:39 Download gff for
BS11354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..631 | 6..592 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:30:39 Download gff for
BS11354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6687001..6687573 | 6..580 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:00:38 Download gff for
BS11354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2512723..2513295 | 6..580 | 99 | | Minus |
BS11354.5prime Sequence
606 bp (605 high quality bases) assembled on 2006-04-18
> BS11354.5prime
GAAGTTATCAGTCGACATGGCATTCAAATTCACCATTCTTTTCGCCGCCT
GCATCGCCGTGGCCAGCGCTGGCATCATTCCCGCCGCCGCTCCACTGGCC
GCCGTGGCCCAGGTTGAGGAGTACGATCCCCATCCTCAGTACACCTACGG
CTATGACGTCAAGGACGCCATCTCTGGTGACTCGAAGACCCAGGTGGAGA
CCCGCGAGGGCGACGTTGTCCAGGGCCAGTACTCGCTGAACGACGCCGAT
GGCTACCGTCGCATTGTGGACTACACCGCCGATCCCATCAACGGATTCAA
CGCAGTGGTGCGCCGTGAGCCCCTGGTGGCCGCCGTTGCCGCCGCTCCTG
CTGCCGTCGTTGCCGCTCCAGCCCCAGTTGTCCGTGCCGCCGTCGCTGCC
CCCGTGGTCCGTGCCGCCCCCCTGACCACCACCTACGCCGCCGCCCCAGC
CCCTCTCGCCTACGCCGCCGCCCCAGCTCCCCTCGCCTACGCCGCCCCCG
CGCCCGTCGTCAAGGCCGCTCCTCTGGTCGCCGCTGGACCCGCCATCGTC
AAGACCCAGTTCGCTTCGCCTCTTATCTCGTACGCCTATTGAAAGCTTTC
TAGACC
BS11354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2342-PA | 576 | Ccp84Ag-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
CG2341-PA | 600 | Ccp84Ad-RA | 316..347 | 272..303 | 160 | 100 | Plus |
CG2360-PA | 618 | Ccp84Aa-RA | 316..347 | 272..303 | 160 | 100 | Plus |
CG1252-PA | 666 | Ccp84Ab-RA | 316..347 | 272..303 | 160 | 100 | Plus |
CG31878-PB | 321 | CG31878-RB | 239..269 | 255..285 | 155 | 100 | Plus |
CG31878-PA | 441 | CG31878-RA | 359..389 | 255..285 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ag-RA | 1097 | CG2342-RA | 47..624 | 17..594 | 2890 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 226..437 | 116..327 | 460 | 81.1 | Plus |
Cpr5C-RA | 605 | CG4052-RA | 219..413 | 115..309 | 360 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6687001..6687566 | 29..594 | 2830 | 100 | Plus |
3R | 32079331 | 3R | 6693018..6693229 | 116..327 | 460 | 81.1 | Plus |
X | 23542271 | X | 5804958..5805152 | 115..309 | 360 | 79 | Plus |
3R | 32079331 | 3R | 6689782..6689969 | 303..116 | 340 | 78.7 | Minus |
3R | 32079331 | 3R | 6691251..6691450 | 324..125 | 325 | 77.5 | Minus |
3R | 32079331 | 3R | 6695740..6695935 | 326..131 | 290 | 76.5 | Minus |
3L | 28110227 | 3L | 4208409..4208554 | 319..174 | 280 | 79.5 | Minus |
3R | 32079331 | 3R | 6704436..6704572 | 191..327 | 235 | 78.1 | Plus |
3R | 32079331 | 3R | 6702373..6702509 | 327..191 | 220 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:03:05 has no hits.
BS11354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:34 Download gff for
BS11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2342-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:13 Download gff for
BS11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2342-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:52 Download gff for
BS11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..631 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:48 Download gff for
BS11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..631 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:48 Download gff for
BS11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6687001..6687573 | 29..603 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:52 Download gff for
BS11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2512723..2513295 | 29..603 | 99 | | Plus |
BS11354.complete Sequence
608 bp assembled on 2006-11-01
GenBank Submission: FJ636835
> BS11354.complete
GAAGTTATCAGTCGACATGGCATTCAAATTCACCATTCTTTTCGCCGCCT
GCATCGCCGTGGCCAGCGCTGGCATCATTCCCGCCGCCGCTCCACTGGCC
GCCGTGGCCCAGGTTGAGGAGTACGATCCCCATCCTCAGTACACCTACGG
CTATGACGTCAAGGACGCCATCTCTGGTGACTCGAAGACCCAGGTGGAGA
CCCGCGAGGGCGACGTTGTCCAGGGCCAGTACTCGCTGAACGACGCCGAT
GGCTACCGTCGCATTGTGGACTACACCGCCGATCCCATCAACGGATTCAA
CGCAGTGGTGCGCCGTGAGCCCCTGGTGGCCGCCGTTGCCGCCGCTCCTG
CTGCCGTCGTTGCCGCTCCAGCCCCAGTTGTCCGTGCCGCCGTCGCTGCC
CCCGTGGTCCGTGCCGCCCCCCTGACCACCACCTACGCCGCCGCCCCAGC
CCCTCTCGCCTACGCCGCCGCCCCAGCTCCCCTCGCCTACGCCGCCCCCG
CGCCCGTCGTCAAGGCCGCTCCTCTGGTCGCCGCTGGACCCGCCATCGTC
AAGACCCAGTTCGCTTCGCCTCTTATCTCGTACGCCTATTGAAAGCTTTC
TAGACCAT
BS11354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ag-RA | 576 | CG2342-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Ccp84Ad-RA | 600 | CG2341-PA | 160..371 | 116..327 | 460 | 81.1 | Plus |
Cpr5C-RA | 438 | CG4052-PA | 165..359 | 115..309 | 360 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ag-RA | 1097 | CG2342-RA | 47..624 | 17..594 | 2890 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 226..437 | 116..327 | 460 | 81.1 | Plus |
Cpr5C-RA | 605 | CG4052-RA | 219..413 | 115..309 | 360 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6687001..6687566 | 29..594 | 2830 | 100 | Plus |
3R | 32079331 | 3R | 6693018..6693229 | 116..327 | 460 | 81.1 | Plus |
X | 23542271 | X | 5804958..5805152 | 115..309 | 360 | 79 | Plus |
3R | 32079331 | 3R | 6689782..6689969 | 303..116 | 340 | 78.7 | Minus |
3R | 32079331 | 3R | 6691251..6691450 | 324..125 | 325 | 77.5 | Minus |
3R | 32079331 | 3R | 6695740..6695935 | 326..131 | 290 | 76.5 | Minus |
3L | 28110227 | 3L | 4208409..4208554 | 319..174 | 280 | 79.5 | Minus |
3L | 28110227 | 3L | 4215996..4216131 | 176..311 | 245 | 78.7 | Plus |
3R | 32079331 | 3R | 6704436..6704572 | 191..327 | 235 | 78.1 | Plus |
2L | 23513712 | 2L | 11945256..11945348 | 191..283 | 225 | 82.8 | Plus |
3R | 32079331 | 3R | 6702373..6702509 | 327..191 | 220 | 77.4 | Minus |
2L | 23513712 | 2L | 9932709..9932817 | 326..218 | 215 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:46:52 has no hits.
BS11354.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:31 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:45 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..631 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:59 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..621 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:31 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..631 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:45 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ag-RA | 47..621 | 17..591 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:45 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6687001..6687563 | 29..591 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:59 Download gff for
BS11354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2512723..2513285 | 29..591 | 100 | | Plus |
BS11354.pep Sequence
Translation from 16 to 591
> BS11354.pep
MAFKFTILFAACIAVASAGIIPAAAPLAAVAQVEEYDPHPQYTYGYDVKD
AISGDSKTQVETREGDVVQGQYSLNDADGYRRIVDYTADPINGFNAVVRR
EPLVAAVAAAPAAVVAAPAPVVRAAVAAPVVRAAPLTTTYAAAPAPLAYA
AAPAPLAYAAPAPVVKAAPLVAAGPAIVKTQFASPLISYAY*
BS11354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ag-PA | 191 | CG2342-PA | 1..191 | 1..191 | 952 | 100 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 1..197 | 1..189 | 434 | 50.5 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 1..219 | 1..189 | 427 | 49.8 | Plus |
Ccp84Ae-PA | 208 | CG1330-PA | 1..207 | 1..181 | 426 | 51.7 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 1..205 | 1..175 | 409 | 52.2 | Plus |