Clone Sequence Records
BS11357.3prime Sequence
831 bp (810 high quality bases) assembled on 2006-04-18
> BS11357.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAGCATTTGTTGTTGCCACTGAGCTTG
CTGCGAATCCAGTCGAGGTAGTAGTACACATTGGCCTGCACATCGGGCAG
TCCGACACCGCATGGTCGTCCCCAATTGACCACACCCACCAATTGGCCAT
TGCTCACCAGCGGACCACCGGAATCGCCGTGACAGGCGCCCTCACCCTCG
CGCGAAAAGGTGCAGATGTGACCCACACCCATGCTGCTGGTTCGGTTGAA
GGTCTCATAGCACTCATCCAGAGGAACAAGGCCCACGGTCAGCTTGTGCA
GGTCCTCCATGGAACTCCCGTAGGCCACATCGGAGCCCCAGCCCGTGAGG
ACGATCTCTTCGCCGAGTTGAACCGGTCTAGTTGGCAAAGCGATCGGCTG
TGTCAGCTCATTGAAGGTGATGTTCTCGGTAAGCTTCACCAGGGCGATGT
CGTTATGCATGTAAGGCTGGTCGTACATACAGTGTTTGTGGATCTCGGCG
GTGTAGTAGATCGCTCCGGGCTCTGCCCACTTATTGGTGCCCGTGATCAC
ATTGACCAGGGCGGGAATGAAATTTTCCACGCAGTGTCCAGCAGTTATGA
TCCAGTTTTCGTTTAGGATGGCACCACCGCAATTATGGGAGCCCACTATG
GGTTGCAGGGACACCTGGTATGGAGCAAATCCGATCTCAGCCTCCTCGCC
ACCCTTTATCCTGCCAGATTGACCCGCAGGAAAGGGGCCAACTATGCGCT
TTGATTCACAGGGATTTGGGGGCTTCACCGCTAGGAGAATTAAAAGGCTT
AGACGGAGCAGCTTCATGTCGACTGATAACT
BS11357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-PA | 801 | CG31265-RA | 1..801 | 817..17 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 909 | CG31265-RA | 30..835 | 822..17 | 4015 | 99.9 | Minus |
CG31269-RB | 937 | CG31269-RB | 599..717 | 227..109 | 235 | 79.8 | Minus |
CG4053-RB | 925 | CG4053-RB | 634..755 | 223..102 | 205 | 78.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17128241..17129046 | 822..17 | 4015 | 99.9 | Minus |
3R | 32079331 | 3R | 17127724..17127842 | 227..109 | 235 | 79.8 | Minus |
3R | 32079331 | 3R | 17131444..17131565 | 102..223 | 205 | 77.9 | Plus |
Blast to na_te.dros performed on 2015-02-07 02:13:59 has no hits.
BS11357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:39 Download gff for
BS11357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:19 Download gff for
BS11357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:25:07 Download gff for
BS11357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 10..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:03:39 Download gff for
BS11357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 10..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:03:39 Download gff for
BS11357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17128241..17129049 | 10..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:25:07 Download gff for
BS11357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12953963..12954771 | 10..822 | 99 | | Minus |
BS11357.5prime Sequence
831 bp (745 high quality bases) assembled on 2006-04-18
> BS11357.5prime
GAAGTTATCAGTCGACATGAAGCTGCTCCGTCTAAGCCTTTTAATTCTCC
TAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTTGGCCCC
TTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGCTGAGAT
CGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCTCCCATA
ATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCTGGACAC
TGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCACCAA
TAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCCACAAAC
ACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTGGTGAAG
CTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGCTTTGCC
AACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCTGGGGCT
CCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTGACCGTG
GGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAACCAGCAG
CATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGGGCGCCT
GTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTGGTGGGT
GTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGTGCAGGC
CAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTGGCAACA
ACAAATGCTACTACTAAAAGCTTTCTAGACC
BS11357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-PA | 801 | CG31265-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 909 | CG31265-RA | 30..835 | 12..817 | 4015 | 99.9 | Plus |
CG31269-RB | 937 | CG31269-RB | 599..717 | 607..725 | 235 | 79.8 | Plus |
CG4053-RB | 925 | CG4053-RB | 634..755 | 611..732 | 205 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17128241..17129046 | 12..817 | 4015 | 99.9 | Plus |
3R | 32079331 | 3R | 17127724..17127842 | 607..725 | 235 | 79.8 | Plus |
3R | 32079331 | 3R | 17131444..17131565 | 732..611 | 205 | 77.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:55:16 has no hits.
BS11357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:40 Download gff for
BS11357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:21 Download gff for
BS11357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:08:40 Download gff for
BS11357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 12..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:19 Download gff for
BS11357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 12..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:19 Download gff for
BS11357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17128241..17129049 | 12..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:08:40 Download gff for
BS11357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12953963..12954771 | 12..824 | 99 | | Plus |
BS11357.complete Sequence
833 bp assembled on 2006-11-01
GenBank Submission: FJ636836
> BS11357.complete
GAAGTTATCAGTCGACATGAAGCTGCTCCGTCTAAGCCTTTTAATTCTCC
TAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTTGGCCCC
TTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGCTGAGAT
CGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCTCCCATA
ATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCTGGACAC
TGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCACCAA
TAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCCACAAAC
ACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTGGTGAAG
CTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGCTTTGCC
AACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCTGGGGCT
CCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTGACCGTG
GGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAACCAGCAG
CATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGGGCGCCT
GTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTGGTGGGT
GTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGTGCAGGC
CAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTGGCAACA
ACAAATGCTACTACTAAAAGCTTTCTAGACCAT
BS11357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 801 | CG31265-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
CG31269-RB | 822 | CG31269-PB | 594..712 | 607..725 | 235 | 79.8 | Plus |
CG4053-RB | 798 | CG4053-PB | 592..713 | 611..732 | 205 | 77.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 909 | CG31265-RA | 30..835 | 12..817 | 4015 | 99.9 | Plus |
CG31269-RB | 937 | CG31269-RB | 599..717 | 607..725 | 235 | 79.8 | Plus |
CG4053-RB | 925 | CG4053-RB | 634..755 | 611..732 | 205 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17128241..17129046 | 12..817 | 4015 | 99.9 | Plus |
3R | 32079331 | 3R | 17127724..17127842 | 607..725 | 235 | 79.8 | Plus |
3R | 32079331 | 3R | 17131444..17131565 | 732..611 | 205 | 77.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:31:27 has no hits.
BS11357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:20 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:29 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 18..826 | 12..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:28 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 35..833 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:20 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 18..826 | 12..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:25 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 35..833 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:25 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17128246..17129044 | 17..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:28 Download gff for
BS11357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12953968..12954766 | 17..815 | 100 | | Plus |
BS11357.pep Sequence
Translation from 16 to 816
> BS11357.pep
MKLLRLSLLILLAVKPPNPCESKRIVGPFPAGQSGRIKGGEEAEIGFAPY
QVSLQPIVGSHNCGGAILNENWIITAGHCVENFIPALVNVITGTNKWAEP
GAIYYTAEIHKHCMYDQPYMHNDIALVKLTENITFNELTQPIALPTRPVQ
LGEEIVLTGWGSDVAYGSSMEDLHKLTVGLVPLDECYETFNRTSSMGVGH
ICTFSREGEGACHGDSGGPLVSNGQLVGVVNWGRPCGVGLPDVQANVYYY
LDWIRSKLSGNNKCYY*
BS11357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-PA | 266 | CG31265-PA | 1..266 | 1..266 | 1444 | 100 | Plus |
CG31269-PB | 273 | CG31269-PB | 6..265 | 8..264 | 763 | 57.9 | Plus |
CG17475-PB | 288 | CG17475-PB | 49..281 | 36..265 | 630 | 49.8 | Plus |
CG17475-PA | 288 | CG17475-PA | 49..281 | 36..265 | 630 | 49.8 | Plus |
CG17477-PA | 267 | CG17477-PA | 27..257 | 37..264 | 598 | 49.4 | Plus |