Clone BS11357 Report

Search the DGRC for BS11357

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG31265-RA
Protein status:BS11357.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11357.3prime Sequence

831 bp (810 high quality bases) assembled on 2006-04-18

> BS11357.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAGCATTTGTTGTTGCCACTGAGCTTG
CTGCGAATCCAGTCGAGGTAGTAGTACACATTGGCCTGCACATCGGGCAG
TCCGACACCGCATGGTCGTCCCCAATTGACCACACCCACCAATTGGCCAT
TGCTCACCAGCGGACCACCGGAATCGCCGTGACAGGCGCCCTCACCCTCG
CGCGAAAAGGTGCAGATGTGACCCACACCCATGCTGCTGGTTCGGTTGAA
GGTCTCATAGCACTCATCCAGAGGAACAAGGCCCACGGTCAGCTTGTGCA
GGTCCTCCATGGAACTCCCGTAGGCCACATCGGAGCCCCAGCCCGTGAGG
ACGATCTCTTCGCCGAGTTGAACCGGTCTAGTTGGCAAAGCGATCGGCTG
TGTCAGCTCATTGAAGGTGATGTTCTCGGTAAGCTTCACCAGGGCGATGT
CGTTATGCATGTAAGGCTGGTCGTACATACAGTGTTTGTGGATCTCGGCG
GTGTAGTAGATCGCTCCGGGCTCTGCCCACTTATTGGTGCCCGTGATCAC
ATTGACCAGGGCGGGAATGAAATTTTCCACGCAGTGTCCAGCAGTTATGA
TCCAGTTTTCGTTTAGGATGGCACCACCGCAATTATGGGAGCCCACTATG
GGTTGCAGGGACACCTGGTATGGAGCAAATCCGATCTCAGCCTCCTCGCC
ACCCTTTATCCTGCCAGATTGACCCGCAGGAAAGGGGCCAACTATGCGCT
TTGATTCACAGGGATTTGGGGGCTTCACCGCTAGGAGAATTAAAAGGCTT
AGACGGAGCAGCTTCATGTCGACTGATAACT

BS11357.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-PA 801 CG31265-RA 1..801 817..17 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-RA 909 CG31265-RA 30..835 822..17 4015 99.9 Minus
CG31269-RB 937 CG31269-RB 599..717 227..109 235 79.8 Minus
CG4053-RB 925 CG4053-RB 634..755 223..102 205 78.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17128241..17129046 822..17 4015 99.9 Minus
3R 32079331 3R 17127724..17127842 227..109 235 79.8 Minus
3R 32079331 3R 17131444..17131565 102..223 205 77.9 Plus
Blast to na_te.dros performed on 2015-02-07 02:13:59 has no hits.

BS11357.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:39 Download gff for BS11357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:19 Download gff for BS11357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:25:07 Download gff for BS11357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 30..838 10..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:03:39 Download gff for BS11357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 30..838 10..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:03:39 Download gff for BS11357.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17128241..17129049 10..822 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:25:07 Download gff for BS11357.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12953963..12954771 10..822 99   Minus

BS11357.5prime Sequence

831 bp (745 high quality bases) assembled on 2006-04-18

> BS11357.5prime
GAAGTTATCAGTCGACATGAAGCTGCTCCGTCTAAGCCTTTTAATTCTCC
TAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTTGGCCCC
TTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGCTGAGAT
CGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCTCCCATA
ATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCTGGACAC
TGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCACCAA
TAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCCACAAAC
ACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTGGTGAAG
CTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGCTTTGCC
AACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCTGGGGCT
CCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTGACCGTG
GGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAACCAGCAG
CATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGGGCGCCT
GTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTGGTGGGT
GTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGTGCAGGC
CAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTGGCAACA
ACAAATGCTACTACTAAAAGCTTTCTAGACC

BS11357.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-PA 801 CG31265-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-RA 909 CG31265-RA 30..835 12..817 4015 99.9 Plus
CG31269-RB 937 CG31269-RB 599..717 607..725 235 79.8 Plus
CG4053-RB 925 CG4053-RB 634..755 611..732 205 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17128241..17129046 12..817 4015 99.9 Plus
3R 32079331 3R 17127724..17127842 607..725 235 79.8 Plus
3R 32079331 3R 17131444..17131565 732..611 205 77.9 Minus
Blast to na_te.dros performed on 2015-02-13 01:55:16 has no hits.

BS11357.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:40 Download gff for BS11357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:21 Download gff for BS11357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:08:40 Download gff for BS11357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 30..838 12..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:19 Download gff for BS11357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 30..838 12..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:19 Download gff for BS11357.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17128241..17129049 12..824 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:08:40 Download gff for BS11357.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12953963..12954771 12..824 99   Plus

BS11357.complete Sequence

833 bp assembled on 2006-11-01

GenBank Submission: FJ636836

> BS11357.complete
GAAGTTATCAGTCGACATGAAGCTGCTCCGTCTAAGCCTTTTAATTCTCC
TAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTTGGCCCC
TTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGCTGAGAT
CGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCTCCCATA
ATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCTGGACAC
TGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCACCAA
TAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCCACAAAC
ACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTGGTGAAG
CTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGCTTTGCC
AACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCTGGGGCT
CCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTGACCGTG
GGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAACCAGCAG
CATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGGGCGCCT
GTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTGGTGGGT
GTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGTGCAGGC
CAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTGGCAACA
ACAAATGCTACTACTAAAAGCTTTCTAGACCAT

BS11357.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-RA 801 CG31265-PA 1..801 17..817 4005 100 Plus
CG31269-RB 822 CG31269-PB 594..712 607..725 235 79.8 Plus
CG4053-RB 798 CG4053-PB 592..713 611..732 205 77.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-RA 909 CG31265-RA 30..835 12..817 4015 99.9 Plus
CG31269-RB 937 CG31269-RB 599..717 607..725 235 79.8 Plus
CG4053-RB 925 CG4053-RB 634..755 611..732 205 77.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17128241..17129046 12..817 4015 99.9 Plus
3R 32079331 3R 17127724..17127842 607..725 235 79.8 Plus
3R 32079331 3R 17131444..17131565 732..611 205 77.9 Minus
Blast to na_te.dros performed on 2014-11-27 13:31:27 has no hits.

BS11357.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:20 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:29 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 18..826 12..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:28 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 35..833 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:20 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 18..826 12..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:25 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 35..833 17..815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:25 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17128246..17129044 17..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:28 Download gff for BS11357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12953968..12954766 17..815 100   Plus

BS11357.pep Sequence

Translation from 16 to 816

> BS11357.pep
MKLLRLSLLILLAVKPPNPCESKRIVGPFPAGQSGRIKGGEEAEIGFAPY
QVSLQPIVGSHNCGGAILNENWIITAGHCVENFIPALVNVITGTNKWAEP
GAIYYTAEIHKHCMYDQPYMHNDIALVKLTENITFNELTQPIALPTRPVQ
LGEEIVLTGWGSDVAYGSSMEDLHKLTVGLVPLDECYETFNRTSSMGVGH
ICTFSREGEGACHGDSGGPLVSNGQLVGVVNWGRPCGVGLPDVQANVYYY
LDWIRSKLSGNNKCYY*

BS11357.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-PA 266 CG31265-PA 1..266 1..266 1444 100 Plus
CG31269-PB 273 CG31269-PB 6..265 8..264 763 57.9 Plus
CG17475-PB 288 CG17475-PB 49..281 36..265 630 49.8 Plus
CG17475-PA 288 CG17475-PA 49..281 36..265 630 49.8 Plus
CG17477-PA 267 CG17477-PA 27..257 37..264 598 49.4 Plus