Clone Sequence Records
BS11360.3prime Sequence
657 bp (656 high quality bases) assembled on 2006-04-18
> BS11360.3prime
ATGGTCTAGAAAGCTTTTACAATTGGGCGACGGTGTACGCAGGGGCGGTG
TACCGCAGAGGCGTGGCATAGGCAGCGGTACGCAGAACGGGAGCGGGAGC
AGCCACCGCCAGAGGGGCGGAGCGGACGAACGGAGCGGCAACTGCTAGGG
GAGCGGACTTGATCAGAGGAGCAGCGACGGCCACTGGAGCGGAGCGCACA
ATGGGAGCTGGTGCGGCCAAGGCGACAGGGGCGATGGGGGCGACTGGAGC
GGCCTTGACCAATGGGGCAGCAACCTTCAGCAACGGCTCGGCGGCCACAA
CAGCGGCAAGGGGTTCACGGCGGACGACGGCGTTGAATCCGTTAATGGAA
TCGGCGGTATAGGTCACGGTGCGCTTAAAGCCATCGGCGTCGATCAGGGA
GTACTCGCCGCGGACCACGTCACCATCGCGCTCCTCCACATGCCCCTTGT
TGTCGCCGGAAAGCGTGTCCTGCACGTCGTAGCTGTAGGTGTACTGAGGA
TGCGGATCAACCTCCTCCAACTCAACGGTCTTGGCCAAAACTGGCACCGG
AGCAGAAGCCACTGCCACTGGAGCAGCAGTTCTAAGGACGGCGCCATGGG
CCACGGCGAACAGAGCCAAAGCGATAACAATCTTTGCTGCCATGTCGACT
GATAACT
BS11360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1330-PA | 627 | Ccp84Ae-RA | 1..627 | 643..17 | 3135 | 100 | Minus |
CG2341-PA | 600 | Ccp84Ad-RA | 238..298 | 439..379 | 255 | 96.7 | Minus |
CG2360-PA | 618 | Ccp84Aa-RA | 223..290 | 454..387 | 190 | 91.1 | Minus |
CG1252-PA | 666 | Ccp84Ab-RA | 223..290 | 454..387 | 190 | 91.1 | Minus |
CG4052-PA | 438 | CG4052-RA | 244..314 | 439..369 | 155 | 88.7 | Minus |
CG1331-PA | 456 | Ccp84Af-RA | 241..298 | 436..379 | 140 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 754 | CG1330-RA | 56..683 | 643..16 | 3140 | 100 | Minus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 508..309 | 490 | 83 | Minus |
Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 469..309 | 400 | 83.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6690958..6691575 | 16..633 | 3090 | 100 | Plus |
3R | 32079331 | 3R | 6693027..6693226 | 508..309 | 490 | 83 | Minus |
3R | 32079331 | 3R | 6702376..6702536 | 309..469 | 400 | 83.2 | Plus |
3R | 32079331 | 3R | 6704409..6704569 | 469..309 | 385 | 82.6 | Minus |
X | 23542271 | X | 5804968..5805153 | 508..323 | 375 | 80.1 | Minus |
3R | 32079331 | 3R | 6687097..6687296 | 508..309 | 325 | 77.5 | Minus |
3R | 32079331 | 3R | 6689775..6689960 | 323..508 | 315 | 78 | Plus |
2L | 23513712 | 2L | 10055357..10055444 | 388..301 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:29:36 has no hits.
BS11360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:45 Download gff for
BS11360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:29 Download gff for
BS11360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:01:31 Download gff for
BS11360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..683 | 16..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:58 Download gff for
BS11360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..683 | 16..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:58 Download gff for
BS11360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6690953..6691577 | 14..637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:01:31 Download gff for
BS11360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2516675..2517299 | 14..637 | 99 | | Plus |
BS11360.5prime Sequence
657 bp (656 high quality bases) assembled on 2006-04-18
> BS11360.5prime
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGTAAAAGCTTT
CTAGACC
BS11360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1330-PA | 627 | Ccp84Ae-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
CG2341-PA | 600 | Ccp84Ad-RA | 238..298 | 221..281 | 255 | 96.7 | Plus |
CG2360-PA | 618 | Ccp84Aa-RA | 223..290 | 206..273 | 190 | 91.1 | Plus |
CG1252-PA | 666 | Ccp84Ab-RA | 223..290 | 206..273 | 190 | 91.1 | Plus |
CG4052-PA | 438 | CG4052-RA | 244..314 | 221..291 | 155 | 88.7 | Plus |
CG1331-PA | 456 | Ccp84Af-RA | 241..298 | 224..281 | 140 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 754 | CG1330-RA | 56..683 | 17..644 | 3140 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 152..351 | 490 | 83 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 191..351 | 400 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6690958..6691575 | 644..27 | 3090 | 100 | Minus |
3R | 32079331 | 3R | 6693027..6693226 | 152..351 | 490 | 83 | Plus |
3R | 32079331 | 3R | 6702376..6702536 | 351..191 | 400 | 83.2 | Minus |
3R | 32079331 | 3R | 6704409..6704569 | 191..351 | 385 | 82.6 | Plus |
X | 23542271 | X | 5804968..5805153 | 152..337 | 375 | 80.1 | Plus |
3R | 32079331 | 3R | 6687097..6687296 | 152..351 | 325 | 77.5 | Plus |
3R | 32079331 | 3R | 6689775..6689960 | 337..152 | 315 | 78 | Minus |
2L | 23513712 | 2L | 10055357..10055444 | 272..359 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:14:04 has no hits.
BS11360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:46 Download gff for
BS11360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:30 Download gff for
BS11360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:02 Download gff for
BS11360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..683 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:02 Download gff for
BS11360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..683 | 9..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:02 Download gff for
BS11360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6690953..6691577 | 23..646 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:02 Download gff for
BS11360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2516675..2517299 | 23..646 | 99 | | Minus |
BS11360.complete Sequence
659 bp assembled on 2006-11-01
GenBank Submission: FJ636837
> BS11360.complete
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGTAAAAGCTTT
CTAGACCAT
BS11360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 627 | CG1330-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Ccp84Ad-RA | 600 | CG2341-PA | 169..368 | 152..351 | 490 | 83 | Plus |
Ccp84Ab-RA | 666 | CG1252-PA | 208..368 | 191..351 | 400 | 83.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 754 | CG1330-RA | 56..683 | 17..644 | 3140 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 152..351 | 490 | 83 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 191..351 | 400 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6690958..6691575 | 644..27 | 3090 | 100 | Minus |
3R | 32079331 | 3R | 6693027..6693226 | 152..351 | 490 | 83 | Plus |
3R | 32079331 | 3R | 6702376..6702536 | 351..191 | 400 | 83.2 | Minus |
3R | 32079331 | 3R | 6704409..6704569 | 191..351 | 385 | 82.6 | Plus |
X | 23542271 | X | 5804968..5805153 | 152..337 | 375 | 80.1 | Plus |
3R | 32079331 | 3R | 6687097..6687296 | 152..351 | 325 | 77.5 | Plus |
3R | 32079331 | 3R | 6689775..6689960 | 337..152 | 315 | 78 | Minus |
2L | 23513712 | 2L | 10055357..10055444 | 272..359 | 185 | 80.7 | Plus |
2L | 23513712 | 2L | 11945216..11945318 | 178..280 | 185 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:01 has no hits.
BS11360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:21 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:31 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..683 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:17 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 56..680 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:21 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..683 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:31 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 56..680 | 17..641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:31 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6690961..6691577 | 23..641 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:17 Download gff for
BS11360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2516683..2517299 | 23..641 | 99 | | Minus |
BS11360.pep Sequence
Translation from 16 to 642
> BS11360.pep
MAAKIVIALALFAVAHGAVLRTAAPVAVASAPVPVLAKTVELEEVDPHPQ
YTYSYDVQDTLSGDNKGHVEERDGDVVRGEYSLIDADGFKRTVTYTADSI
NGFNAVVRREPLAAVVAAEPLLKVAAPLVKAAPVAPIAPVALAAPAPIVR
SAPVAVAAPLIKSAPLAVAAPFVRSAPLAVAAPAPVLRTAAYATPLRYTA
PAYTVAQL*
BS11360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-PA | 208 | CG1330-PA | 1..208 | 1..208 | 1020 | 100 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 1..216 | 1..202 | 436 | 53.3 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 1..194 | 1..202 | 427 | 52.1 | Plus |
Ccp84Ag-PA | 191 | CG2342-PA | 1..181 | 1..207 | 426 | 51.7 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 1..200 | 1..202 | 423 | 52.1 | Plus |