Clone BS11360 Report

Search the DGRC for BS11360

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCcp84Ae-RA
Protein status:BS11360.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11360.3prime Sequence

657 bp (656 high quality bases) assembled on 2006-04-18

> BS11360.3prime
ATGGTCTAGAAAGCTTTTACAATTGGGCGACGGTGTACGCAGGGGCGGTG
TACCGCAGAGGCGTGGCATAGGCAGCGGTACGCAGAACGGGAGCGGGAGC
AGCCACCGCCAGAGGGGCGGAGCGGACGAACGGAGCGGCAACTGCTAGGG
GAGCGGACTTGATCAGAGGAGCAGCGACGGCCACTGGAGCGGAGCGCACA
ATGGGAGCTGGTGCGGCCAAGGCGACAGGGGCGATGGGGGCGACTGGAGC
GGCCTTGACCAATGGGGCAGCAACCTTCAGCAACGGCTCGGCGGCCACAA
CAGCGGCAAGGGGTTCACGGCGGACGACGGCGTTGAATCCGTTAATGGAA
TCGGCGGTATAGGTCACGGTGCGCTTAAAGCCATCGGCGTCGATCAGGGA
GTACTCGCCGCGGACCACGTCACCATCGCGCTCCTCCACATGCCCCTTGT
TGTCGCCGGAAAGCGTGTCCTGCACGTCGTAGCTGTAGGTGTACTGAGGA
TGCGGATCAACCTCCTCCAACTCAACGGTCTTGGCCAAAACTGGCACCGG
AGCAGAAGCCACTGCCACTGGAGCAGCAGTTCTAAGGACGGCGCCATGGG
CCACGGCGAACAGAGCCAAAGCGATAACAATCTTTGCTGCCATGTCGACT
GATAACT

BS11360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1330-PA 627 Ccp84Ae-RA 1..627 643..17 3135 100 Minus
CG2341-PA 600 Ccp84Ad-RA 238..298 439..379 255 96.7 Minus
CG2360-PA 618 Ccp84Aa-RA 223..290 454..387 190 91.1 Minus
CG1252-PA 666 Ccp84Ab-RA 223..290 454..387 190 91.1 Minus
CG4052-PA 438 CG4052-RA 244..314 439..369 155 88.7 Minus
CG1331-PA 456 Ccp84Af-RA 241..298 436..379 140 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 754 CG1330-RA 56..683 643..16 3140 100 Minus
Ccp84Ad-RA 735 CG2341-RA 235..434 508..309 490 83 Minus
Ccp84Ab-RA 834 CG1252-RA 266..426 469..309 400 83.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690958..6691575 16..633 3090 100 Plus
3R 32079331 3R 6693027..6693226 508..309 490 83 Minus
3R 32079331 3R 6702376..6702536 309..469 400 83.2 Plus
3R 32079331 3R 6704409..6704569 469..309 385 82.6 Minus
X 23542271 X 5804968..5805153 508..323 375 80.1 Minus
3R 32079331 3R 6687097..6687296 508..309 325 77.5 Minus
3R 32079331 3R 6689775..6689960 323..508 315 78 Plus
2L 23513712 2L 10055357..10055444 388..301 185 80.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:29:36 has no hits.

BS11360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:45 Download gff for BS11360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:29 Download gff for BS11360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:01:31 Download gff for BS11360.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..683 16..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:58 Download gff for BS11360.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..683 16..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:58 Download gff for BS11360.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6690953..6691577 14..637 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:01:31 Download gff for BS11360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516675..2517299 14..637 99   Plus

BS11360.5prime Sequence

657 bp (656 high quality bases) assembled on 2006-04-18

> BS11360.5prime
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGTAAAAGCTTT
CTAGACC

BS11360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1330-PA 627 Ccp84Ae-RA 1..627 17..643 3135 100 Plus
CG2341-PA 600 Ccp84Ad-RA 238..298 221..281 255 96.7 Plus
CG2360-PA 618 Ccp84Aa-RA 223..290 206..273 190 91.1 Plus
CG1252-PA 666 Ccp84Ab-RA 223..290 206..273 190 91.1 Plus
CG4052-PA 438 CG4052-RA 244..314 221..291 155 88.7 Plus
CG1331-PA 456 Ccp84Af-RA 241..298 224..281 140 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 754 CG1330-RA 56..683 17..644 3140 100 Plus
Ccp84Ad-RA 735 CG2341-RA 235..434 152..351 490 83 Plus
Ccp84Ab-RA 834 CG1252-RA 266..426 191..351 400 83.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690958..6691575 644..27 3090 100 Minus
3R 32079331 3R 6693027..6693226 152..351 490 83 Plus
3R 32079331 3R 6702376..6702536 351..191 400 83.2 Minus
3R 32079331 3R 6704409..6704569 191..351 385 82.6 Plus
X 23542271 X 5804968..5805153 152..337 375 80.1 Plus
3R 32079331 3R 6687097..6687296 152..351 325 77.5 Plus
3R 32079331 3R 6689775..6689960 337..152 315 78 Minus
2L 23513712 2L 10055357..10055444 272..359 185 80.7 Plus
Blast to na_te.dros performed on 2015-02-10 07:14:04 has no hits.

BS11360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:46 Download gff for BS11360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:30 Download gff for BS11360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:30:02 Download gff for BS11360.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..683 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:48:02 Download gff for BS11360.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..683 9..644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:48:02 Download gff for BS11360.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6690953..6691577 23..646 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:30:02 Download gff for BS11360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516675..2517299 23..646 99   Minus

BS11360.complete Sequence

659 bp assembled on 2006-11-01

GenBank Submission: FJ636837

> BS11360.complete
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGTAAAAGCTTT
CTAGACCAT

BS11360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 627 CG1330-PA 1..627 17..643 3135 100 Plus
Ccp84Ad-RA 600 CG2341-PA 169..368 152..351 490 83 Plus
Ccp84Ab-RA 666 CG1252-PA 208..368 191..351 400 83.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 754 CG1330-RA 56..683 17..644 3140 100 Plus
Ccp84Ad-RA 735 CG2341-RA 235..434 152..351 490 83 Plus
Ccp84Ab-RA 834 CG1252-RA 266..426 191..351 400 83.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690958..6691575 644..27 3090 100 Minus
3R 32079331 3R 6693027..6693226 152..351 490 83 Plus
3R 32079331 3R 6702376..6702536 351..191 400 83.2 Minus
3R 32079331 3R 6704409..6704569 191..351 385 82.6 Plus
X 23542271 X 5804968..5805153 152..337 375 80.1 Plus
3R 32079331 3R 6687097..6687296 152..351 325 77.5 Plus
3R 32079331 3R 6689775..6689960 337..152 315 78 Minus
2L 23513712 2L 10055357..10055444 272..359 185 80.7 Plus
2L 23513712 2L 11945216..11945318 178..280 185 78.6 Plus
Blast to na_te.dros performed on 2014-11-27 23:48:01 has no hits.

BS11360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:21 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:31 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..683 9..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:17 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 56..680 17..641 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:21 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..683 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:31 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 56..680 17..641 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:31 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6690961..6691577 23..641 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:17 Download gff for BS11360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516683..2517299 23..641 99   Minus

BS11360.pep Sequence

Translation from 16 to 642

> BS11360.pep
MAAKIVIALALFAVAHGAVLRTAAPVAVASAPVPVLAKTVELEEVDPHPQ
YTYSYDVQDTLSGDNKGHVEERDGDVVRGEYSLIDADGFKRTVTYTADSI
NGFNAVVRREPLAAVVAAEPLLKVAAPLVKAAPVAPIAPVALAAPAPIVR
SAPVAVAAPLIKSAPLAVAAPFVRSAPLAVAAPAPVLRTAAYATPLRYTA
PAYTVAQL*

BS11360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-PA 208 CG1330-PA 1..208 1..208 1020 100 Plus
Ccp84Ab-PA 221 CG1252-PA 1..216 1..202 436 53.3 Plus
Ccp84Ad-PA 199 CG2341-PA 1..194 1..202 427 52.1 Plus
Ccp84Ag-PA 191 CG2342-PA 1..181 1..207 426 51.7 Plus
Ccp84Aa-PA 205 CG2360-PA 1..200 1..202 423 52.1 Plus