Clone BS11364 Report

Search the DGRC for BS11364

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptlin-28-RA
Protein status:BS11364.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11364.3prime Sequence

618 bp (617 high quality bases) assembled on 2006-04-18

> BS11364.3prime
ATGGTCTAGAAAGCTTCTAGGTGGCCTCCTCGCTCTTCTCTTGGGCTGCA
CTGCTGCTGCTATTGTTGCTTATGCTTTTGCTATTACTGTGGCTTTGGGT
CACATTCTTGTGCGGGCAGTCGGCATGGAGATGGTCTTCTCCACGGCAGC
GATGACAGCGCTTCGGCTGAGGACCCAAAGCGCATTCGGAGGCAATGTGA
TTGGCGAATTCGCCGCAGTTGTAGCAGCGCATGCGGCGAGTCCGGCGATT
TATTCGCGGCCTGTAGGTGCTGCCTTGGCAGCTACCGCCATGCCTGCTGG
ACACCCTGGTGGCCTCCAATCCGCGCGACGTGCGCTGGCACTCGAATTCC
ACCTCCTCCTGCTCGCCCAGTGATCGGAAACCTGACATCTGGATGACGCT
CTGATGGACGAACACCTCCTGGCCGCCGTCGTTGGGTGTAAGGAAGCCCC
ATCCCTTGGCCACGTTGAACCATTTGCATTTGCCCAGTCGCACACAACCG
CATTCCTCGGTGGGACTCGCAAGATTTGCCGGATTCGCTGATGAAGTGGA
ACTCTGGCTGGTGGTCCTCCTTTCCAAGCCATTTTCCAGCTGTACGTTCT
CCATGTCGACTGATAACT

BS11364.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17334-PA 588 lin-28-RA 1..588 604..17 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 1152 CG17334-RA 299..887 605..17 2945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5656603..5656753 402..252 755 100 Minus
3L 28110227 3L 5656823..5656973 251..101 755 100 Minus
3L 28110227 3L 5656316..5656455 540..401 700 100 Minus
3L 28110227 3L 5657035..5657119 101..17 425 100 Minus
3L 28110227 3L 5654979..5655046 605..538 340 100 Minus
Blast to na_te.dros performed 2015-02-12 05:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6856 111..51 124 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2364 94..45 117 72.5 Minus
roo 9092 roo DM_ROO 9092bp 1058..1100 86..45 113 76.7 Minus

BS11364.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:49 Download gff for BS11364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:34 Download gff for BS11364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:14 Download gff for BS11364.3prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..891 14..611 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:47 Download gff for BS11364.3prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..891 14..611 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:47 Download gff for BS11364.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5654973..5655046 538..611 97 -> Minus
3L 5656319..5656455 401..537 100 -> Minus
3L 5656605..5656753 252..400 100 -> Minus
3L 5656823..5656973 101..251 100 -> Minus
3L 5657036..5657123 14..100 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:14 Download gff for BS11364.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5648073..5648146 538..611 97 -> Minus
arm_3L 5649419..5649555 401..537 100 -> Minus
arm_3L 5649705..5649853 252..400 100 -> Minus
arm_3L 5649923..5650073 101..251 100 -> Minus
arm_3L 5650136..5650223 14..100 98   Minus

BS11364.5prime Sequence

618 bp (617 high quality bases) assembled on 2006-04-18

> BS11364.5prime
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CTAGAAGCTTTCTAGACC

BS11364.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17334-PA 588 lin-28-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 1152 CG17334-RA 299..887 16..604 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5656603..5656753 219..369 755 100 Plus
3L 28110227 3L 5656823..5656973 370..520 755 100 Plus
3L 28110227 3L 5656316..5656455 81..220 700 100 Plus
3L 28110227 3L 5657035..5657119 520..604 425 100 Plus
3L 28110227 3L 5654979..5655046 16..83 340 100 Plus
Blast to na_te.dros performed 2015-02-13 09:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6856 510..570 124 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2364 527..576 117 72.5 Plus
roo 9092 roo DM_ROO 9092bp 1058..1100 535..576 113 76.7 Plus

BS11364.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:50 Download gff for BS11364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:36 Download gff for BS11364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:13 Download gff for BS11364.5prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..891 10..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:34 Download gff for BS11364.5prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..891 10..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:34 Download gff for BS11364.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5654973..5655046 10..83 97 -> Plus
3L 5656319..5656455 84..220 100 -> Plus
3L 5656605..5656753 221..369 100 -> Plus
3L 5656823..5656973 370..520 100 -> Plus
3L 5657036..5657123 521..607 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:13 Download gff for BS11364.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5648073..5648146 10..83 97 -> Plus
arm_3L 5649419..5649555 84..220 100 -> Plus
arm_3L 5650136..5650223 521..607 98   Plus
arm_3L 5649705..5649853 221..369 100 -> Plus
arm_3L 5649923..5650073 370..520 100 -> Plus

BS11364.complete Sequence

620 bp assembled on 2006-11-01

GenBank Submission: FJ636838

> BS11364.complete
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CTAGAAGCTTTCTAGACCAT

BS11364.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 588 CG17334-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 1152 CG17334-RA 299..887 16..604 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5656603..5656753 219..369 755 100 Plus
3L 28110227 3L 5656823..5656973 370..520 755 100 Plus
3L 28110227 3L 5656316..5656455 81..220 700 100 Plus
3L 28110227 3L 5657035..5657119 520..604 425 100 Plus
3L 28110227 3L 5654979..5655046 16..83 340 100 Plus
Blast to na_te.dros performed 2014-11-28 01:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6856 510..570 124 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2364 527..576 117 72.5 Plus
roo 9092 roo DM_ROO 9092bp 1058..1100 535..576 113 76.7 Plus

BS11364.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:22 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:33 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 291..889 10..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:38 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 300..887 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:22 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 291..889 10..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:14 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 300..887 17..604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:14 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5656823..5656973 370..520 100 -> Plus
3L 5657036..5657119 521..604 100   Plus
3L 5654980..5655046 17..83 100 -> Plus
3L 5656319..5656455 84..220 100 -> Plus
3L 5656605..5656753 221..369 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:38 Download gff for BS11364.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5649923..5650073 370..520 100 -> Plus
arm_3L 5650136..5650219 521..604 100   Plus
arm_3L 5648080..5648146 17..83 100 -> Plus
arm_3L 5649419..5649555 84..220 100 -> Plus
arm_3L 5649705..5649853 221..369 100 -> Plus

BS11364.pep Sequence

Translation from 16 to 603

> BS11364.pep
MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAK
GWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR
VSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRC
HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEAT*

BS11364.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-PA 195 CG17334-PA 1..195 1..195 1052 100 Plus
yps-PB 340 CG5654-PB 51..150 29..123 152 38 Plus
yps-PA 352 CG5654-PA 51..150 29..123 152 38 Plus