Clone Sequence Records
BS11364.3prime Sequence
618 bp (617 high quality bases) assembled on 2006-04-18
> BS11364.3prime
ATGGTCTAGAAAGCTTCTAGGTGGCCTCCTCGCTCTTCTCTTGGGCTGCA
CTGCTGCTGCTATTGTTGCTTATGCTTTTGCTATTACTGTGGCTTTGGGT
CACATTCTTGTGCGGGCAGTCGGCATGGAGATGGTCTTCTCCACGGCAGC
GATGACAGCGCTTCGGCTGAGGACCCAAAGCGCATTCGGAGGCAATGTGA
TTGGCGAATTCGCCGCAGTTGTAGCAGCGCATGCGGCGAGTCCGGCGATT
TATTCGCGGCCTGTAGGTGCTGCCTTGGCAGCTACCGCCATGCCTGCTGG
ACACCCTGGTGGCCTCCAATCCGCGCGACGTGCGCTGGCACTCGAATTCC
ACCTCCTCCTGCTCGCCCAGTGATCGGAAACCTGACATCTGGATGACGCT
CTGATGGACGAACACCTCCTGGCCGCCGTCGTTGGGTGTAAGGAAGCCCC
ATCCCTTGGCCACGTTGAACCATTTGCATTTGCCCAGTCGCACACAACCG
CATTCCTCGGTGGGACTCGCAAGATTTGCCGGATTCGCTGATGAAGTGGA
ACTCTGGCTGGTGGTCCTCCTTTCCAAGCCATTTTCCAGCTGTACGTTCT
CCATGTCGACTGATAACT
BS11364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17334-PA | 588 | lin-28-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 1152 | CG17334-RA | 299..887 | 605..17 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5656603..5656753 | 402..252 | 755 | 100 | Minus |
3L | 28110227 | 3L | 5656823..5656973 | 251..101 | 755 | 100 | Minus |
3L | 28110227 | 3L | 5656316..5656455 | 540..401 | 700 | 100 | Minus |
3L | 28110227 | 3L | 5657035..5657119 | 101..17 | 425 | 100 | Minus |
3L | 28110227 | 3L | 5654979..5655046 | 605..538 | 340 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 111..51 | 124 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2364 | 94..45 | 117 | 72.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 86..45 | 113 | 76.7 | Minus |
BS11364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:49 Download gff for
BS11364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:34 Download gff for
BS11364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:31:14 Download gff for
BS11364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..891 | 14..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:47 Download gff for
BS11364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..891 | 14..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:47 Download gff for
BS11364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5654973..5655046 | 538..611 | 97 | -> | Minus |
3L | 5656319..5656455 | 401..537 | 100 | -> | Minus |
3L | 5656605..5656753 | 252..400 | 100 | -> | Minus |
3L | 5656823..5656973 | 101..251 | 100 | -> | Minus |
3L | 5657036..5657123 | 14..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:31:14 Download gff for
BS11364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5648073..5648146 | 538..611 | 97 | -> | Minus |
arm_3L | 5649419..5649555 | 401..537 | 100 | -> | Minus |
arm_3L | 5649705..5649853 | 252..400 | 100 | -> | Minus |
arm_3L | 5649923..5650073 | 101..251 | 100 | -> | Minus |
arm_3L | 5650136..5650223 | 14..100 | 98 | | Minus |
BS11364.5prime Sequence
618 bp (617 high quality bases) assembled on 2006-04-18
> BS11364.5prime
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CTAGAAGCTTTCTAGACC
BS11364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17334-PA | 588 | lin-28-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 1152 | CG17334-RA | 299..887 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5656603..5656753 | 219..369 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656823..5656973 | 370..520 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656316..5656455 | 81..220 | 700 | 100 | Plus |
3L | 28110227 | 3L | 5657035..5657119 | 520..604 | 425 | 100 | Plus |
3L | 28110227 | 3L | 5654979..5655046 | 16..83 | 340 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 09:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 510..570 | 124 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2364 | 527..576 | 117 | 72.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 535..576 | 113 | 76.7 | Plus |
BS11364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:50 Download gff for
BS11364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:36 Download gff for
BS11364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:48:13 Download gff for
BS11364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..891 | 10..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:34 Download gff for
BS11364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..891 | 10..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:34 Download gff for
BS11364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5654973..5655046 | 10..83 | 97 | -> | Plus |
3L | 5656319..5656455 | 84..220 | 100 | -> | Plus |
3L | 5656605..5656753 | 221..369 | 100 | -> | Plus |
3L | 5656823..5656973 | 370..520 | 100 | -> | Plus |
3L | 5657036..5657123 | 521..607 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:48:13 Download gff for
BS11364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5648073..5648146 | 10..83 | 97 | -> | Plus |
arm_3L | 5649419..5649555 | 84..220 | 100 | -> | Plus |
arm_3L | 5650136..5650223 | 521..607 | 98 | | Plus |
arm_3L | 5649705..5649853 | 221..369 | 100 | -> | Plus |
arm_3L | 5649923..5650073 | 370..520 | 100 | -> | Plus |
BS11364.complete Sequence
620 bp assembled on 2006-11-01
GenBank Submission: FJ636838
> BS11364.complete
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CTAGAAGCTTTCTAGACCAT
BS11364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 588 | CG17334-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 1152 | CG17334-RA | 299..887 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5656603..5656753 | 219..369 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656823..5656973 | 370..520 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656316..5656455 | 81..220 | 700 | 100 | Plus |
3L | 28110227 | 3L | 5657035..5657119 | 520..604 | 425 | 100 | Plus |
3L | 28110227 | 3L | 5654979..5655046 | 16..83 | 340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 510..570 | 124 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2364 | 527..576 | 117 | 72.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 535..576 | 113 | 76.7 | Plus |
BS11364.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:22 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:33 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 291..889 | 10..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:38 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 300..887 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:22 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 291..889 | 10..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:14 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 300..887 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:14 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5656823..5656973 | 370..520 | 100 | -> | Plus |
3L | 5657036..5657119 | 521..604 | 100 | | Plus |
3L | 5654980..5655046 | 17..83 | 100 | -> | Plus |
3L | 5656319..5656455 | 84..220 | 100 | -> | Plus |
3L | 5656605..5656753 | 221..369 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:38 Download gff for
BS11364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5649923..5650073 | 370..520 | 100 | -> | Plus |
arm_3L | 5650136..5650219 | 521..604 | 100 | | Plus |
arm_3L | 5648080..5648146 | 17..83 | 100 | -> | Plus |
arm_3L | 5649419..5649555 | 84..220 | 100 | -> | Plus |
arm_3L | 5649705..5649853 | 221..369 | 100 | -> | Plus |
BS11364.pep Sequence
Translation from 16 to 603
> BS11364.pep
MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAK
GWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR
VSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRC
HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEAT*
BS11364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-PA | 195 | CG17334-PA | 1..195 | 1..195 | 1052 | 100 | Plus |
yps-PB | 340 | CG5654-PB | 51..150 | 29..123 | 152 | 38 | Plus |
yps-PA | 352 | CG5654-PA | 51..150 | 29..123 | 152 | 38 | Plus |