Clone BS11366 Report

Search the DGRC for BS11366

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG13826-RA
Protein status:BS11366.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11366.3prime Sequence

336 bp (335 high quality bases) assembled on 2006-04-18

> BS11366.3prime
ATGGTCTAGAAAGCTTTTAACACCGAAGCCTTTCAATACTTACCAGATTG
GTAAAATGGAAGCCACCTTTCCAAATGTTGGTCTTGGCGTTACCTGGCGT
CGTCGATTGGGTGATGGATGGCGTTGGCTTGGCCAGTACAGCGGGCGTGG
AAGCCACCGTGGGCTTAATCAGCTTACTCAACTTCGAGGGTGGTCCAATG
GGCACCCGGACGGTGACCTTCTTCTTCGGATTCAGCTGCAATTGGGTCTG
GTGGTAGGTATATTCGATGTCCTTCGCCGGGGACAAGGATTGCAGCCGAG
GCAGATCCTCTAAGTCGATCATGTCGACTGATAACT

BS11366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13826-PA 306 CG13826-RA 1..306 322..17 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-RN 4746 CG43286-RN 313..592 322..43 1400 100 Minus
cnc-RM 4737 CG43286-RM 304..583 322..43 1400 100 Minus
cnc-RI 4750 CG43286-RI 317..596 322..43 1400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23222770..23223075 17..322 1530 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:20:16 has no hits.

BS11366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:54 Download gff for BS11366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13826-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:40 Download gff for BS11366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13826-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:26:56 Download gff for BS11366.3prime
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 312..603 33..330 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:31 Download gff for BS11366.3prime
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 312..603 33..330 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:31 Download gff for BS11366.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23222763..23223080 10..330 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:26:56 Download gff for BS11366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19048485..19048802 10..330 97   Plus

BS11366.5prime Sequence

336 bp (335 high quality bases) assembled on 2006-04-18

> BS11366.5prime
GAAGTTATCAGTCGACATGATCGACTTAGAGGATCTGCCTCGGCTGCAAT
CCTTGTCCCCGGCGAAGGACATCGAATATACCTACCACCAGACCCAATTG
CAGCTGAATCCGAAGAAGAAGGTCACCGTCCGGGTGCCCATTGGACCACC
CTCGAAGTTGAGTAAGCTGATTAAGCCCACGGTGGCTTCCACGCCCGCTG
TACTGGCCAAGCCAACGCCATCCATCACCCAATCGACGACGCCAGGTAAC
GCCAAGACCAACATTTGGAAAGGTGGCTTCCATTTTACCAATCTGGTAAG
TATTGAAAGGCTTCGGTGTTAAAAGCTTTCTAGACC

BS11366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13826-PA 306 CG13826-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-RN 4746 CG43286-RN 313..592 17..296 1400 100 Plus
cnc-RM 4737 CG43286-RM 304..583 17..296 1400 100 Plus
cnc-RI 4750 CG43286-RI 317..596 17..296 1400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23222770..23223075 322..17 1530 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:08:16 has no hits.

BS11366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:55 Download gff for BS11366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13826-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:41 Download gff for BS11366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13826-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:56:05 Download gff for BS11366.5prime
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 312..603 9..306 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:34 Download gff for BS11366.5prime
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 312..603 9..306 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:34 Download gff for BS11366.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23222763..23223080 9..329 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:56:05 Download gff for BS11366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19048485..19048802 9..329 97   Minus

BS11366.complete Sequence

338 bp assembled on 2006-11-01

GenBank Submission: FJ636839

> BS11366.complete
GAAGTTATCAGTCGACATGATCGACTTAGAGGATCTGCCTCGGCTGCAAT
CCTTGTCCCCGGCGAAGGACATCGAATATACCTACCACCAGACCCAATTG
CAGCTGAATCCGAAGAAGAAGGTCACCGTCCGGGTGCCCATTGGACCACC
CTCGAAGTTGAGTAAGCTGATTAAGCCCACGGTGGCTTCCACGCCCGCTG
TACTGGCCAAGCCAACGCCATCCATCACCCAATCGACGACGCCAGGTAAC
GCCAAGACCAACATTTGGAAAGGTGGCTTCCATTTTACCAATCTGGTAAG
TATTGAAAGGCTTCGGTGTTAAAAGCTTTCTAGACCAT

BS11366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-RN 3402 CG43286-PN 1..280 17..296 1400 100 Plus
cnc-RM 3402 CG43286-PM 1..280 17..296 1400 100 Plus
cnc-RI 3402 CG43286-PI 1..280 17..296 1400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-RN 4746 CG43286-RN 313..592 17..296 1400 100 Plus
cnc-RM 4737 CG43286-RM 304..583 17..296 1400 100 Plus
cnc-RI 4750 CG43286-RI 317..596 17..296 1400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23222770..23223075 322..17 1530 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:27:58 has no hits.

BS11366.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:23 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:34 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 309..626 9..329 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:49 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 317..603 17..306 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:23 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 309..626 9..329 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:25 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 317..603 17..306 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:25 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23222772..23223075 17..320 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:49 Download gff for BS11366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19048494..19048797 17..320 100   Minus

BS11366.pep Sequence

Translation from 16 to 321

> BS11366.pep
MIDLEDLPRLQSLSPAKDIEYTYHQTQLQLNPKKKVTVRVPIGPPSKLSK
LIKPTVASTPAVLAKPTPSITQSTTPGNAKTNIWKGGFHFTNLVSIERLR
C*

BS11366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-PN 1133 CG43286-PN 1..95 1..95 485 98.9 Plus
cnc-PM 1133 CG43286-PM 1..95 1..95 485 98.9 Plus
cnc-PI 1133 CG43286-PI 1..95 1..95 485 98.9 Plus