Clone BS11367 Report

Search the DGRC for BS11367

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG13995-RA
Protein status:BS11367.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11367.3prime Sequence

897 bp (838 high quality bases) assembled on 2006-04-18

> BS11367.3prime
ATGGTCTAGAAAGCTTCTAGTAGAGATAATGCGAAGAGGCCTGAGCTCTA
TACTGTTTCGGTGTTAGCTTGATCAGCTTGGGGTTGAATGCCCCCAGTGC
CGCCTCGTTGGTGGACGAGGGAGGCGGCGGGGCGGTGTGCGTCCGGAAGC
GCGACCTCAGGAAGTTCTGCATGGAGCGCAGGCGGATGATGGGCGCGCAG
GGAGATTGTCGAAGCGAATTGTGGTTGAGCGCCCAGTAGATCACCGGACT
GATGGCCGAGTAGAAGTAGCCTAGCAGAAGGCTGAAGTAAACAGAGGTCT
GGCTGCACTGCTGATTGTTGCCGAAGTTCTTGTAGAAGATGCAGAAGACG
TGCGGTGCCCAGCAGGCAATGAAGATCACGGCCGAGGCGATGAGCATGTT
AGCCAGGTGCCTTCGCGACCGCAGCGTGGAGGTTTGGGGCAGTGGGATGC
CGGGTGTCGCTGGTCCCCTGCCTGCTCGGTTGATGCGCTGGCGCTGCGAG
TGGGCGCGAATCTCCCTCATGGCCCTGGGTGATATGGGATTGCTAGAGCG
GTAGGAGCCCGGTTCGAGGGCCGATCCGGCAGAGCCTGGCTGGCGCGGCT
GCAGTGTGTGAAGCTGTATGTCGCCCGGACTGACGGCCATGGGACCGCCA
CCGGTGCCCGTGCCGTTCCCGTTCGAGGTGTCGTCCGCCGTGGTGCCCCC
ACCACAGGCCGCTTGCTGGGCGTTGGGGCAGCCCGTCACAATGACCATGT
GGGTCTGGCGTCGCAGGATGGGAATGGGCAGCGGCAGCTCTCCATGGGCA
GCTCGAGCCGTTAGCGACAGGGCGCAGAGCTTGCGTCGGACGCCGTAGTG
GTTGAGTAGCACACCAATGCCAGGCAACACGAACACGGCGATGGTGT

BS11367.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-PA 1638 CG13995-RA 758..1638 897..17 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-RA 3379 CG13995-RA 1340..2220 897..17 4405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6057875..6058248 897..524 1870 100 Minus
2L 23513712 2L 6058426..6058682 526..270 1285 100 Minus
2L 23513712 2L 6058755..6059010 272..17 1280 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:35:25 has no hits.

BS11367.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:56 Download gff for BS11367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-PA 758..1638 17..897 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:43 Download gff for BS11367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-PA 758..1638 17..897 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:02:13 Download gff for BS11367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1340..2220 17..897 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:04 Download gff for BS11367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1340..2220 17..897 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:04 Download gff for BS11367.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6057875..6058247 525..897 100 -> Minus
2L 6058428..6058681 271..524 100 -> Minus
2L 6058757..6059010 17..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:02:13 Download gff for BS11367.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6057875..6058247 525..897 100 -> Minus
arm_2L 6058428..6058681 271..524 100 -> Minus
arm_2L 6058757..6059010 17..270 100   Minus

BS11367.5prime Sequence

962 bp (882 high quality bases) assembled on 2006-04-18

> BS11367.5prime
GAAGTTATCAGTCGACATGAACAGGGACAATCTGCAGCAGTGGTGGGAGA
ACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACCTCGGCCTGGAC
TCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAGCTGCCCGCGGA
CTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGACGTGGACTCAG
AGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTGTTAGCTATGGC
CTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTCGTTCTGACCCT
CTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCTGCTGGCCGTCT
GCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGGTCACGCTCCTC
AATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTTGTGCTGTGCAA
GGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAGCACTATTTCGT
TTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGCATCCGCGATTG
GCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTGGCGCTGCTATC
CTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTTTGCCTACAAAA
TCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGGCGAACACCACG
CCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGCGCCAACGCCAT
GTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTTCGTGTTGCCTG
GCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCAAGCTCTGCGCC
CTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCGCTGCCCATTCC
CATCCTGCGACGCCAGACCACATGGTCATTGTGACGGGCTGCCCCAACGC
CCAGCAAGCGGG

BS11367.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-PA 1638 CG13995-RA 1..903 17..919 4515 100 Plus
CG13995-PA 1638 CG13995-RA 903..946 918..961 220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-RA 3379 CG13995-RA 582..1528 16..961 4710 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6057568..6058063 467..961 2430 99.8 Plus
2L 23513712 2L 6057053..6057508 16..471 2280 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:03:26 has no hits.

BS11367.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:57 Download gff for BS11367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-PA 1..946 17..962 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:45 Download gff for BS11367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-PA 1..946 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:49 Download gff for BS11367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 582..1528 16..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:44 Download gff for BS11367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 582..1528 16..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:44 Download gff for BS11367.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6057053..6057506 16..469 100 -> Plus
2L 6057571..6058063 470..962 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:49 Download gff for BS11367.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6057053..6057506 16..469 100 -> Plus
arm_2L 6057571..6058063 470..962 99   Plus

BS11367.complete Sequence

1670 bp assembled on 2006-11-01

GenBank Submission: FJ636840

> BS11367.complete
GAAGTTATCAGTCGACATGAACAGGGACAATCTGCAGCAGTGGTGGGAGA
ACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACCTCGGCCTGGAC
TCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAGCTGCCCGCGGA
CTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGACGTGGACTCAG
AGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTGTTAGCTATGGC
CTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTCGTTCTGACCCT
CTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCTGCTGGCCGTCT
GCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGGTCACGCTCCTC
AATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTTGTGCTGTGCAA
GGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAGCACTATTTCGT
TTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGCATCCGCGATTG
GCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTGGCGCTGCTATC
CTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTTTGCCTACAAAA
TCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGGCGAACACCACG
CCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGCGCCAACGCCAT
GTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTTCGTGTTGCCTG
GCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCAAGCTCTGCGCC
CTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCGCTGCCCATTCC
CATCCTGCGACGCCAGACCCACATGGTCATTGTGACGGGCTGCCCCAACG
CCCAGCAAGCGGCCTGTGGTGGGGGCACCACGGCGGACGACACCTCGAAC
GGGAACGGCACGGGCACCGGTGGCGGTCCCATGGCCGTCAGTCCGGGCGA
CATACAGCTTCACACACTGCAGCCGCGCCAGCCAGGCTCTGCCGGATCGG
CCCTCGAACCGGGCTCCTACCGCTCTAGCAATCCCATATCACCCAGGGCC
ATGAGGGAGATTCGCGCCCACTCGCAGCGCCAGCGCATCAACCGAGCAGG
CAGGGGACCAGCGACACCCGGCATCCCACTGCCCCAAACCTCCACGCTGC
GGTCGCGAAGGCACCTGGCTAACATGCTCATCGCCTCGGCCGTGATCTTC
ATTGCCTGCTGGGCACCGCACGTCTTCTGCATCTTCTACAAGAACTTCGG
CAACAATCAGCAGTGCAGCCAGACCTCTGTTTACTTCAGCCTTCTGCTAG
GCTACTTCTACTCGGCCATCAGTCCGGTGATCTACTGGGCGCTCAACCAC
AATTCGCTTCGACAATCTCCCTGCGCGCCCATCATCCGCCTGCGCTCCAT
GCAGAACTTCCTGAGGTCGCGCTTCCGGACGCACACCGCCCCGCCGCCTC
CCTCGTCCACCAACGAGGCGGCACTGGGGGCATTCAACCCCAAGCTGATC
AAGCTAACACCGAAACAGTATAGAGCTCAGGCCTCTTCGCATTATCTCTA
CTAGAAGCTTTCTAGACCAT

BS11367.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-RA 1638 CG13995-PA 1..1638 17..1654 8190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-RA 3379 CG13995-RA 582..2220 16..1654 8195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6057568..6058248 467..1147 3405 100 Plus
2L 23513712 2L 6057053..6057508 16..471 2280 100 Plus
2L 23513712 2L 6058426..6058682 1145..1401 1285 100 Plus
2L 23513712 2L 6058755..6059010 1399..1654 1280 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:14:38 has no hits.

BS11367.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:26 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:37 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 577..2215 16..1654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:18 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 583..2220 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:26 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 577..2215 16..1654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:44 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 583..2220 17..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:44 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6058757..6059010 1401..1654 100   Plus
2L 6057054..6057506 17..469 100 -> Plus
2L 6057571..6058247 470..1146 100 -> Plus
2L 6058428..6058681 1147..1400 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:18 Download gff for BS11367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6057054..6057506 17..469 100 -> Plus
arm_2L 6057571..6058247 470..1146 100 -> Plus
arm_2L 6058428..6058681 1147..1400 100 -> Plus
arm_2L 6058757..6059010 1401..1654 100   Plus

BS11367.pep Sequence

Translation from 16 to 1653

> BS11367.pep
MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN
FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS
VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV
QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA
AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI
IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ
THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT
LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT
PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC
SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR
SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLY*

BS11367.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-PA 545 CG13995-PA 1..545 1..545 2832 100 Plus
5-HT7-PB 564 CG12073-PB 154..547 62..513 193 22.8 Plus
5-HT7-PA 564 CG12073-PA 154..547 62..513 193 22.8 Plus
NPFR-PC 462 CG1147-PC 88..288 72..276 158 23.9 Plus
NPFR-PB 466 CG1147-PB 88..288 72..276 158 23.9 Plus