Clone Sequence Records
BS11367.3prime Sequence
897 bp (838 high quality bases) assembled on 2006-04-18
> BS11367.3prime
ATGGTCTAGAAAGCTTCTAGTAGAGATAATGCGAAGAGGCCTGAGCTCTA
TACTGTTTCGGTGTTAGCTTGATCAGCTTGGGGTTGAATGCCCCCAGTGC
CGCCTCGTTGGTGGACGAGGGAGGCGGCGGGGCGGTGTGCGTCCGGAAGC
GCGACCTCAGGAAGTTCTGCATGGAGCGCAGGCGGATGATGGGCGCGCAG
GGAGATTGTCGAAGCGAATTGTGGTTGAGCGCCCAGTAGATCACCGGACT
GATGGCCGAGTAGAAGTAGCCTAGCAGAAGGCTGAAGTAAACAGAGGTCT
GGCTGCACTGCTGATTGTTGCCGAAGTTCTTGTAGAAGATGCAGAAGACG
TGCGGTGCCCAGCAGGCAATGAAGATCACGGCCGAGGCGATGAGCATGTT
AGCCAGGTGCCTTCGCGACCGCAGCGTGGAGGTTTGGGGCAGTGGGATGC
CGGGTGTCGCTGGTCCCCTGCCTGCTCGGTTGATGCGCTGGCGCTGCGAG
TGGGCGCGAATCTCCCTCATGGCCCTGGGTGATATGGGATTGCTAGAGCG
GTAGGAGCCCGGTTCGAGGGCCGATCCGGCAGAGCCTGGCTGGCGCGGCT
GCAGTGTGTGAAGCTGTATGTCGCCCGGACTGACGGCCATGGGACCGCCA
CCGGTGCCCGTGCCGTTCCCGTTCGAGGTGTCGTCCGCCGTGGTGCCCCC
ACCACAGGCCGCTTGCTGGGCGTTGGGGCAGCCCGTCACAATGACCATGT
GGGTCTGGCGTCGCAGGATGGGAATGGGCAGCGGCAGCTCTCCATGGGCA
GCTCGAGCCGTTAGCGACAGGGCGCAGAGCTTGCGTCGGACGCCGTAGTG
GTTGAGTAGCACACCAATGCCAGGCAACACGAACACGGCGATGGTGT
BS11367.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-PA | 1638 | CG13995-RA | 758..1638 | 897..17 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 3379 | CG13995-RA | 1340..2220 | 897..17 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6057875..6058248 | 897..524 | 1870 | 100 | Minus |
2L | 23513712 | 2L | 6058426..6058682 | 526..270 | 1285 | 100 | Minus |
2L | 23513712 | 2L | 6058755..6059010 | 272..17 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:35:25 has no hits.
BS11367.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:56 Download gff for
BS11367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 758..1638 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:43 Download gff for
BS11367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 758..1638 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:02:13 Download gff for
BS11367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 1340..2220 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:04 Download gff for
BS11367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 1340..2220 | 17..897 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:04 Download gff for
BS11367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6057875..6058247 | 525..897 | 100 | -> | Minus |
2L | 6058428..6058681 | 271..524 | 100 | -> | Minus |
2L | 6058757..6059010 | 17..270 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:02:13 Download gff for
BS11367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6057875..6058247 | 525..897 | 100 | -> | Minus |
arm_2L | 6058428..6058681 | 271..524 | 100 | -> | Minus |
arm_2L | 6058757..6059010 | 17..270 | 100 | | Minus |
BS11367.5prime Sequence
962 bp (882 high quality bases) assembled on 2006-04-18
> BS11367.5prime
GAAGTTATCAGTCGACATGAACAGGGACAATCTGCAGCAGTGGTGGGAGA
ACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACCTCGGCCTGGAC
TCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAGCTGCCCGCGGA
CTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGACGTGGACTCAG
AGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTGTTAGCTATGGC
CTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTCGTTCTGACCCT
CTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCTGCTGGCCGTCT
GCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGGTCACGCTCCTC
AATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTTGTGCTGTGCAA
GGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAGCACTATTTCGT
TTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGCATCCGCGATTG
GCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTGGCGCTGCTATC
CTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTTTGCCTACAAAA
TCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGGCGAACACCACG
CCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGCGCCAACGCCAT
GTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTTCGTGTTGCCTG
GCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCAAGCTCTGCGCC
CTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCGCTGCCCATTCC
CATCCTGCGACGCCAGACCACATGGTCATTGTGACGGGCTGCCCCAACGC
CCAGCAAGCGGG
BS11367.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-PA | 1638 | CG13995-RA | 1..903 | 17..919 | 4515 | 100 | Plus |
CG13995-PA | 1638 | CG13995-RA | 903..946 | 918..961 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 3379 | CG13995-RA | 582..1528 | 16..961 | 4710 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6057568..6058063 | 467..961 | 2430 | 99.8 | Plus |
2L | 23513712 | 2L | 6057053..6057508 | 16..471 | 2280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:03:26 has no hits.
BS11367.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:06:57 Download gff for
BS11367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:45 Download gff for
BS11367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:49 Download gff for
BS11367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 582..1528 | 16..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:44 Download gff for
BS11367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 582..1528 | 16..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:44 Download gff for
BS11367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6057053..6057506 | 16..469 | 100 | -> | Plus |
2L | 6057571..6058063 | 470..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:49 Download gff for
BS11367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6057053..6057506 | 16..469 | 100 | -> | Plus |
arm_2L | 6057571..6058063 | 470..962 | 99 | | Plus |
BS11367.complete Sequence
1670 bp assembled on 2006-11-01
GenBank Submission: FJ636840
> BS11367.complete
GAAGTTATCAGTCGACATGAACAGGGACAATCTGCAGCAGTGGTGGGAGA
ACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACCTCGGCCTGGAC
TCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAGCTGCCCGCGGA
CTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGACGTGGACTCAG
AGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTGTTAGCTATGGC
CTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTCGTTCTGACCCT
CTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCTGCTGGCCGTCT
GCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGGTCACGCTCCTC
AATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTTGTGCTGTGCAA
GGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAGCACTATTTCGT
TTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGCATCCGCGATTG
GCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTGGCGCTGCTATC
CTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTTTGCCTACAAAA
TCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGGCGAACACCACG
CCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGCGCCAACGCCAT
GTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTTCGTGTTGCCTG
GCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCAAGCTCTGCGCC
CTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCGCTGCCCATTCC
CATCCTGCGACGCCAGACCCACATGGTCATTGTGACGGGCTGCCCCAACG
CCCAGCAAGCGGCCTGTGGTGGGGGCACCACGGCGGACGACACCTCGAAC
GGGAACGGCACGGGCACCGGTGGCGGTCCCATGGCCGTCAGTCCGGGCGA
CATACAGCTTCACACACTGCAGCCGCGCCAGCCAGGCTCTGCCGGATCGG
CCCTCGAACCGGGCTCCTACCGCTCTAGCAATCCCATATCACCCAGGGCC
ATGAGGGAGATTCGCGCCCACTCGCAGCGCCAGCGCATCAACCGAGCAGG
CAGGGGACCAGCGACACCCGGCATCCCACTGCCCCAAACCTCCACGCTGC
GGTCGCGAAGGCACCTGGCTAACATGCTCATCGCCTCGGCCGTGATCTTC
ATTGCCTGCTGGGCACCGCACGTCTTCTGCATCTTCTACAAGAACTTCGG
CAACAATCAGCAGTGCAGCCAGACCTCTGTTTACTTCAGCCTTCTGCTAG
GCTACTTCTACTCGGCCATCAGTCCGGTGATCTACTGGGCGCTCAACCAC
AATTCGCTTCGACAATCTCCCTGCGCGCCCATCATCCGCCTGCGCTCCAT
GCAGAACTTCCTGAGGTCGCGCTTCCGGACGCACACCGCCCCGCCGCCTC
CCTCGTCCACCAACGAGGCGGCACTGGGGGCATTCAACCCCAAGCTGATC
AAGCTAACACCGAAACAGTATAGAGCTCAGGCCTCTTCGCATTATCTCTA
CTAGAAGCTTTCTAGACCAT
BS11367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 1638 | CG13995-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 3379 | CG13995-RA | 582..2220 | 16..1654 | 8195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6057568..6058248 | 467..1147 | 3405 | 100 | Plus |
2L | 23513712 | 2L | 6057053..6057508 | 16..471 | 2280 | 100 | Plus |
2L | 23513712 | 2L | 6058426..6058682 | 1145..1401 | 1285 | 100 | Plus |
2L | 23513712 | 2L | 6058755..6059010 | 1399..1654 | 1280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:14:38 has no hits.
BS11367.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:26 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 1..1638 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:37 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 577..2215 | 16..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:18 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 583..2220 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:26 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 577..2215 | 16..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:44 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 583..2220 | 17..1654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:44 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6058757..6059010 | 1401..1654 | 100 | | Plus |
2L | 6057054..6057506 | 17..469 | 100 | -> | Plus |
2L | 6057571..6058247 | 470..1146 | 100 | -> | Plus |
2L | 6058428..6058681 | 1147..1400 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:18 Download gff for
BS11367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6057054..6057506 | 17..469 | 100 | -> | Plus |
arm_2L | 6057571..6058247 | 470..1146 | 100 | -> | Plus |
arm_2L | 6058428..6058681 | 1147..1400 | 100 | -> | Plus |
arm_2L | 6058757..6059010 | 1401..1654 | 100 | | Plus |
BS11367.pep Sequence
Translation from 16 to 1653
> BS11367.pep
MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN
FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS
VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV
QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA
AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI
IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ
THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT
LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT
PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC
SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR
SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLY*
BS11367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-PA | 545 | CG13995-PA | 1..545 | 1..545 | 2832 | 100 | Plus |
5-HT7-PB | 564 | CG12073-PB | 154..547 | 62..513 | 193 | 22.8 | Plus |
5-HT7-PA | 564 | CG12073-PA | 154..547 | 62..513 | 193 | 22.8 | Plus |
NPFR-PC | 462 | CG1147-PC | 88..288 | 72..276 | 158 | 23.9 | Plus |
NPFR-PB | 466 | CG1147-PB | 88..288 | 72..276 | 158 | 23.9 | Plus |