Clone BS11372 Report

Search the DGRC for BS11372

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:113
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG2310-RA
Protein status:BS11372.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11372.3prime Sequence

786 bp (785 high quality bases) assembled on 2006-04-18

> BS11372.3prime
ATGGTCTAGAAAGCTTTCAGACCCTGGCGGCCTTCGTGCGCCGCAGCTGG
ACGACATTGATCACGCAGACGAGCAGCCATGCGAGCAGTGCGATCCAGGC
AAAGACCAGGGTGAAGTACAGGCAGGCGGCCGTATTGATGCGCCCGTAGC
GTCGCCGCTCGTACGACACGCTCTCCACCAGATAGTCCATGAAGTCGAAG
ACGGCGGCGCACGAGAGCCGCGACTTGATCACGGGCACAATGTTGCCCAC
GCCCTGGATCTCCTTCAGCAGCGACTCCCTGTACTGCTTGCAAGTCACCT
CGAAGCCATCCGTGAACACGGCCGAGTAGACCAGTTGGTAGACGGCCATT
ATTGTCGAGATGACGGTGGCGGGCAGCCAGTAGTAGGGCGAGAGACCATC
GGGCGTGAGTTCCGACTCGGTGGTCACCACGATCATGTCACCGGAGCGCT
GACGGATGGTGGCCGTGCCCGCCTTGGGCTTGCCCCGACCGATGCACATG
CGGTAGCCGTGGTAGACGCCCAGGACGACGGCGAAGAGCAGCGGCAGCAG
CAGGCCGTAGGTGGCGAAGTGGCAGTAGGCGACGTTGCCGCCCTCGAAGC
TGTGGAACGTGCTCTTGCCGTGCAGCACGCAGCCGCAATTGGTGTCCGGG
CAGGCATTGAGCACGTACTGCCAGTGTGTCCAGGCCACCGCCGAGGTGAT
GCAGCAGACCAGCGATGAAACGATGGCCAGCGGGTAGAGTAGGGACAGGG
CTCGCTCCGCGTAGTACGACATGTCGACTGATAACT

BS11372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-PA 756 CG2310-RA 1..756 772..17 3780 100 Minus
CG2310-PB 756 CG2310-RB 1..756 772..17 3780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 1279 CG2310-RB 300..1055 772..17 3780 100 Minus
CG2310-RA 1083 CG2310-RA 104..859 772..17 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29491748..29492109 17..378 1810 100 Plus
3R 32079331 3R 29492396..29492721 447..772 1630 100 Plus
3R 32079331 3R 29492170..29492239 378..447 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:10:36 has no hits.

BS11372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:05 Download gff for BS11372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 17..772 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:56 Download gff for BS11372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 17..772 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:52:43 Download gff for BS11372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..859 17..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:21 Download gff for BS11372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..859 17..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:21 Download gff for BS11372.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29492396..29492737 447..786 98   Plus
3R 29491748..29492109 17..378 100 <- Plus
3R 29492171..29492238 379..446 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:52:43 Download gff for BS11372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25317470..25317831 17..378 100 <- Plus
arm_3R 25317893..25317960 379..446 100 <- Plus
arm_3R 25318118..25318459 447..786 98   Plus

BS11372.5prime Sequence

786 bp (785 high quality bases) assembled on 2006-04-18

> BS11372.5prime
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCTGAAAGCTTTCTAGACC

BS11372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-PA 756 CG2310-RA 1..756 17..772 3780 100 Plus
CG2310-PB 756 CG2310-RB 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 1279 CG2310-RB 300..1055 17..772 3780 100 Plus
CG2310-RA 1083 CG2310-RA 104..859 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29491748..29492109 772..411 1810 100 Minus
3R 32079331 3R 29492396..29492721 342..17 1630 100 Minus
3R 32079331 3R 29492170..29492239 411..342 350 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:51:22 has no hits.

BS11372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:06 Download gff for BS11372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 17..772 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:58 Download gff for BS11372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:37:00 Download gff for BS11372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..859 3..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:33 Download gff for BS11372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..859 3..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:33 Download gff for BS11372.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29491748..29492109 411..772 100 <- Minus
3R 29492171..29492238 343..410 100 <- Minus
3R 29492396..29492737 3..342 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:37:00 Download gff for BS11372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25317470..25317831 411..772 100 <- Minus
arm_3R 25317893..25317960 343..410 100 <- Minus
arm_3R 25318118..25318459 3..342 98   Minus

BS11372.complete Sequence

788 bp assembled on 2006-11-01

GenBank Submission: FJ636841

> BS11372.complete
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCTGAAAGCTTTCTAGACCAT

BS11372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 756 CG2310-PB 1..756 17..772 3780 100 Plus
CG2310-RA 756 CG2310-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 1279 CG2310-RB 300..1055 17..772 3780 100 Plus
CG2310-RA 1083 CG2310-RA 104..859 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29491748..29492109 772..411 1810 100 Minus
3R 32079331 3R 29492396..29492721 342..17 1630 100 Minus
3R 32079331 3R 29492170..29492239 411..342 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:22:08 has no hits.

BS11372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:27 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RB 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:39 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RB 262..1033 3..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:51 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 104..858 17..771 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:28 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RB 262..1033 3..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:57 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 104..858 17..771 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:57 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29491749..29492109 411..771 100 <- Minus
3R 29492171..29492238 343..410 100 <- Minus
3R 29492396..29492721 17..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:51 Download gff for BS11372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25317893..25317960 343..410 100 <- Minus
arm_3R 25317471..25317831 411..771 100 <- Minus
arm_3R 25318118..25318443 17..342 100   Minus

BS11372.pep Sequence

Translation from 16 to 771

> BS11372.pep
MSYYAERALSLLYPLAIVSSLVCCITSAVAWTHWQYVLNACPDTNCGCVL
HGKSTFHSFEGGNVAYCHFATYGLLLPLLFAVVLGVYHGYRMCIGRGKPK
AGTATIRQRSGDMIVVTTESELTPDGLSPYYWLPATVISTIMAVYQLVYS
AVFTDGFEVTCKQYRESLLKEIQGVGNIVPVIKSRLSCAAVFDFMDYLVE
SVSYERRRYGRINTAACLYFTLVFAWIALLAWLLVCVINVVQLRRTKAAR
V*

BS11372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-PB 251 CG2310-PB 1..251 1..251 1323 100 Plus
CG2310-PA 251 CG2310-PA 1..251 1..251 1323 100 Plus