Clone Sequence Records
BS11372.3prime Sequence
786 bp (785 high quality bases) assembled on 2006-04-18
> BS11372.3prime
ATGGTCTAGAAAGCTTTCAGACCCTGGCGGCCTTCGTGCGCCGCAGCTGG
ACGACATTGATCACGCAGACGAGCAGCCATGCGAGCAGTGCGATCCAGGC
AAAGACCAGGGTGAAGTACAGGCAGGCGGCCGTATTGATGCGCCCGTAGC
GTCGCCGCTCGTACGACACGCTCTCCACCAGATAGTCCATGAAGTCGAAG
ACGGCGGCGCACGAGAGCCGCGACTTGATCACGGGCACAATGTTGCCCAC
GCCCTGGATCTCCTTCAGCAGCGACTCCCTGTACTGCTTGCAAGTCACCT
CGAAGCCATCCGTGAACACGGCCGAGTAGACCAGTTGGTAGACGGCCATT
ATTGTCGAGATGACGGTGGCGGGCAGCCAGTAGTAGGGCGAGAGACCATC
GGGCGTGAGTTCCGACTCGGTGGTCACCACGATCATGTCACCGGAGCGCT
GACGGATGGTGGCCGTGCCCGCCTTGGGCTTGCCCCGACCGATGCACATG
CGGTAGCCGTGGTAGACGCCCAGGACGACGGCGAAGAGCAGCGGCAGCAG
CAGGCCGTAGGTGGCGAAGTGGCAGTAGGCGACGTTGCCGCCCTCGAAGC
TGTGGAACGTGCTCTTGCCGTGCAGCACGCAGCCGCAATTGGTGTCCGGG
CAGGCATTGAGCACGTACTGCCAGTGTGTCCAGGCCACCGCCGAGGTGAT
GCAGCAGACCAGCGATGAAACGATGGCCAGCGGGTAGAGTAGGGACAGGG
CTCGCTCCGCGTAGTACGACATGTCGACTGATAACT
BS11372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-PA | 756 | CG2310-RA | 1..756 | 772..17 | 3780 | 100 | Minus |
CG2310-PB | 756 | CG2310-RB | 1..756 | 772..17 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 1279 | CG2310-RB | 300..1055 | 772..17 | 3780 | 100 | Minus |
CG2310-RA | 1083 | CG2310-RA | 104..859 | 772..17 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29491748..29492109 | 17..378 | 1810 | 100 | Plus |
3R | 32079331 | 3R | 29492396..29492721 | 447..772 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 29492170..29492239 | 378..447 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:10:36 has no hits.
BS11372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:05 Download gff for
BS11372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 17..772 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:56 Download gff for
BS11372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 17..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:52:43 Download gff for
BS11372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..859 | 17..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:21 Download gff for
BS11372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..859 | 17..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:21 Download gff for
BS11372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29492396..29492737 | 447..786 | 98 | | Plus |
3R | 29491748..29492109 | 17..378 | 100 | <- | Plus |
3R | 29492171..29492238 | 379..446 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:52:43 Download gff for
BS11372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25317470..25317831 | 17..378 | 100 | <- | Plus |
arm_3R | 25317893..25317960 | 379..446 | 100 | <- | Plus |
arm_3R | 25318118..25318459 | 447..786 | 98 | | Plus |
BS11372.5prime Sequence
786 bp (785 high quality bases) assembled on 2006-04-18
> BS11372.5prime
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCTGAAAGCTTTCTAGACC
BS11372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-PA | 756 | CG2310-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
CG2310-PB | 756 | CG2310-RB | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 1279 | CG2310-RB | 300..1055 | 17..772 | 3780 | 100 | Plus |
CG2310-RA | 1083 | CG2310-RA | 104..859 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29491748..29492109 | 772..411 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 29492396..29492721 | 342..17 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 29492170..29492239 | 411..342 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:51:22 has no hits.
BS11372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:06 Download gff for
BS11372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:58 Download gff for
BS11372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:37:00 Download gff for
BS11372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..859 | 3..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:33 Download gff for
BS11372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..859 | 3..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:33 Download gff for
BS11372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29491748..29492109 | 411..772 | 100 | <- | Minus |
3R | 29492171..29492238 | 343..410 | 100 | <- | Minus |
3R | 29492396..29492737 | 3..342 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:37:00 Download gff for
BS11372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25317470..25317831 | 411..772 | 100 | <- | Minus |
arm_3R | 25317893..25317960 | 343..410 | 100 | <- | Minus |
arm_3R | 25318118..25318459 | 3..342 | 98 | | Minus |
BS11372.complete Sequence
788 bp assembled on 2006-11-01
GenBank Submission: FJ636841
> BS11372.complete
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCTGAAAGCTTTCTAGACCAT
BS11372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 756 | CG2310-PB | 1..756 | 17..772 | 3780 | 100 | Plus |
CG2310-RA | 756 | CG2310-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 1279 | CG2310-RB | 300..1055 | 17..772 | 3780 | 100 | Plus |
CG2310-RA | 1083 | CG2310-RA | 104..859 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29491748..29492109 | 772..411 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 29492396..29492721 | 342..17 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 29492170..29492239 | 411..342 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:22:08 has no hits.
BS11372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:51:27 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RB | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:26:39 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RB | 262..1033 | 3..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:51 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 104..858 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:51:28 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RB | 262..1033 | 3..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:57 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 104..858 | 17..771 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:57 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29491749..29492109 | 411..771 | 100 | <- | Minus |
3R | 29492171..29492238 | 343..410 | 100 | <- | Minus |
3R | 29492396..29492721 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:51 Download gff for
BS11372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25317893..25317960 | 343..410 | 100 | <- | Minus |
arm_3R | 25317471..25317831 | 411..771 | 100 | <- | Minus |
arm_3R | 25318118..25318443 | 17..342 | 100 | | Minus |
BS11372.pep Sequence
Translation from 16 to 771
> BS11372.pep
MSYYAERALSLLYPLAIVSSLVCCITSAVAWTHWQYVLNACPDTNCGCVL
HGKSTFHSFEGGNVAYCHFATYGLLLPLLFAVVLGVYHGYRMCIGRGKPK
AGTATIRQRSGDMIVVTTESELTPDGLSPYYWLPATVISTIMAVYQLVYS
AVFTDGFEVTCKQYRESLLKEIQGVGNIVPVIKSRLSCAAVFDFMDYLVE
SVSYERRRYGRINTAACLYFTLVFAWIALLAWLLVCVINVVQLRRTKAAR
V*
BS11372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-PB | 251 | CG2310-PB | 1..251 | 1..251 | 1323 | 100 | Plus |
CG2310-PA | 251 | CG2310-PA | 1..251 | 1..251 | 1323 | 100 | Plus |