Clone Sequence Records
BS11373.3prime Sequence
890 bp (794 high quality bases) assembled on 2006-04-18
> BS11373.3prime
ATGGTCTAGAAAGCTTCTATTGCGTCTTAACATTATCCCAAAAATGTTGC
AGTCTTTGGCTATTCAGATATCCAAATTTCCACTGTTGCTTATGGTTCTT
CGGATCACAGACACTCGAAGTAACCGCATTTAATTCCGGCTGGGCCTCCA
GGCAATGTCTGAAGTTTTGCTGTTGGCCGGAGATCACCTGATGGGTCTTG
GAGTCGAAGGACCAGAACTGATTTCCACTCTGACCATGGCACTGGTATAT
ATGAACGTTTACTCCGTGATTGCGCACCTCCAAGCAATAGAATCCAGATC
GCAACTCCCTATGATTAGTTAGGCTCCAATACTGCTCTGGACTTGGGAAT
ACGTGGTCCGAACTACAAGGAGCTAATTTGGGTTGACCATGACTAGGATC
TTTGCGATCCAGGCAGAGTTTCGGTGATGATATACTTTGTAACACTCCCG
AAGCGTATTCTGCGGGATCTAATATGGGATATAGATTGAGGAAATCCGTA
GCGAGGTTATCCAAAAACCACTTGAAAGGCTTGCAGTGGAGGCGGTTCTT
AAGGTCTCGTTGCTCGGCAAGATTGCCCACCGGAATCACTGTTAAATGTG
GCATGTTGGCAAATAACTTGTCCTTATATTCATCTAACCAAATCTCAGCG
ACTCGGCGGTAGTTCCTTGAAATTAATTTCTTCTCACTATTTTTATCCTT
GTTGGTATAGCGAATTTGGAAATTTCCGTCTCTAAAGAGATGGCCAACCC
TAGAGCAGGGAACTTCTAGGATTTGTCCTCCGCACAACCACAGCTTAAGA
CTCAGCTCGAACTGCTCGGCTCCCCAGATCTTCAAGCCCTTGTCGTAGCC
ACCGAGCTCAGAGAACCACTCACGTCCAATAGCAAAGAGG
BS11373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7297-PA | 1773 | pgant8-RA | 900..1773 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 997..1870 | 890..17 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15685621..15686269 | 665..17 | 3245 | 100 | Minus |
| 3L | 28110227 | 3L | 15685304..15685529 | 890..665 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:37:46 has no hits.
BS11373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:07 Download gff for
BS11373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 900..1773 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:36:59 Download gff for
BS11373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 900..1773 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:58:39 Download gff for
BS11373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 997..1873 | 14..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:22 Download gff for
BS11373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 997..1873 | 14..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:22 Download gff for
BS11373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15685304..15685529 | 665..890 | 100 | -> | Minus |
| 3L | 15685622..15686272 | 14..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:58:39 Download gff for
BS11373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15678404..15678629 | 665..890 | 100 | -> | Minus |
| arm_3L | 15678722..15679372 | 14..664 | 99 | | Minus |
BS11373.5prime Sequence
911 bp (828 high quality bases) assembled on 2006-04-18
> BS11373.5prime
GAAGTTATCAGTCGACATGTGCCTGGACATTTGGCGGCACAAGAAGAAGG
TGTTGCCGCTGCTACTGCTAATGGCCATCGGCAGTATTATCTACTATCTA
TATACCCTGAAATTGGAGGGGGAGCGTGATGAAAGTGCAACTTCGACAAC
TTCTCGCTTGGAGCGTGACATAAGAGATCTGCAAGCGGTCTTCGAGTCGG
AGGTCATACCGGATCTGGGAGCTTTGGGTCGCCCGGCAAGGGGTAATTGG
ACTGAGGAGCAGCTGGAGGCCATCGCCAAAAGTCAGCGGGAAACGGGTTA
CAATGCTTGGCTCTCCAAGCGCATCTCACCTGAGCGATCGCTCTACGATA
TGCGACATCGCAGCTGCAAAAAGCTCAAGTACCCGATGGAAAAGCTCCCA
TCAGTCAGTGTGGTGATAACGTATCACAATGAGGAGGCAAGCGTGCTGCT
TCGAACGCTTAGCAGCTTGAGGAGCCGAACTCCGATCCAGCTGCTTCGAG
AGGTTATCCTGGTGGACGACGGGAGCACCCAAGCGGACGAGAAGCTCAAC
GACTTCATTAAGATCAAGTTTCTAAATATGGTGCAGCACCGCAGGATCAC
AACCCAGGTGGGTCTGATGCATGCGAGAGTCGTGGGCGCGGAACTCGCCC
TGGCCGATGTCCTCGTCTTCCTAGACTCCCACGTGGAAGTCACCAAAGGC
TGGCTGGAGCCGCTCATTGCTCCCATTTTAGAGGACAACAGGACCTGCAC
TACTCCTATTATAGACACCATTGACTTTGATAACTTTGCCTACAGAAGGG
GGAAGCCGTCGAGGGGCTTCTTCAACTGGGAAATCAATTATATTCAGCTT
CCACTTCTCAAAGAGGAGGCGGTAGCCATGCCGGCTCCGCATAAGAATCC
CCATATGAATG
BS11373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7297-PA | 1773 | pgant8-RA | 1..885 | 17..901 | 4400 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 98..992 | 17..911 | 4415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15684749..15685299 | 361..911 | 2695 | 99.3 | Plus |
| 3L | 28110227 | 3L | 15683969..15684315 | 17..363 | 1735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:54:21 has no hits.
BS11373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:07:08 Download gff for
BS11373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:37:00 Download gff for
BS11373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:59 Download gff for
BS11373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..992 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:11 Download gff for
BS11373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..992 | 17..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:11 Download gff for
BS11373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15683968..15684315 | 16..363 | 99 | -> | Plus |
| 3L | 15684752..15685299 | 364..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:59 Download gff for
BS11373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15677068..15677415 | 16..363 | 99 | -> | Plus |
| arm_3L | 15677852..15678399 | 364..911 | 99 | | Plus |
BS11373.complete Sequence
1805 bp assembled on 2010-05-13
GenBank Submission: KX805607
> BS11373.complete
GAAGTTATCAGTCGACATGTGCCTGGACATTTGGCGGCACAAGAAGAAGG
TGTTGCCGCTGCTACTGCTAATGGCCATCGGCAGTATTATCTACTATCTA
TATACCCTGAAATTGGAGGGGGAGCGTGATGAAAGTGCAACTTCGACAAC
TTCTCGCTTGGAGCGTGACATAAGAGATCTGCAAGCGGTCTTCGAGTCGG
AGGTCATACCGGATCTGGGAGCTTTGGGTCGCCCGGCAAGGGGTAATTGG
ACTGAGGAGCAGCTGGAGGCCATCGCCAAAAGTCAGCGGGAAACGGGTTA
CAATGCTTGGCTCTCCAAGCGCATCTCACCTGAGCGATCGCTCTACGATA
TGCGACATCGCAGCTGCAAAAAGCTCAAGTACCCGATGGAAAAGCTCCCA
TCAGTCAGTGTGGTGATAACGTATCACAATGAGGAGGCAAGCGTGCTGCT
TCGAACGCTTAGCAGCTTGAGGAGCCGAACTCCGATCCAGCTGCTTCGAG
AGGTTATCCTGGTGGACGACGGGAGCACCCAAGCGGACGAGAAGCTCAAC
GACTTCATTAAGATCAAGTTTCTAAATATGGTGCAGCACCGCAGGATCAC
AACCCAGGTGGGTCTGATGCATGCGAGAGTCGTGGGCGCGGAACTCGCCC
TGGCCGATGTCCTCGTCTTCCTAGACTCCCACGTGGAAGTCACCAAAGGC
TGGCTGGAGCCGCTCATTGCTCCCATTTTAGAGGACAACAGGACCTGCAC
TACTCCTATTATAGACACCATTGACTTTGATAACTTTGCCTACAGAAGGG
GGAAGCCGTCGAGGGGCTTCTTCAACTGGGAATTCAATTATATTCAGCTT
CCACTTCTCAAAGAGGAGGCGGTAGCCATGCCGGCTCCGCATAAGAATCC
CATAATGAATGGTGGCCTCTTTGCTATTGGACGTGAGTGGTTCTCTGAGC
TCGGTGGCTACGACAAGGGCTTGAAGATCTGGGGAGCCGAGCAGTTCGAG
CTGAGTCTTAAGCTGTGGTTGTGCGGAGGACAAATCCTAGAAGTTCCCTG
CTCTAGGGTTGGCCATCTCTTTAGAGACGGAAATTTCCAAATTCGCTATA
CCAACAAGGATAAAAATAGTGAGAAGAAATTAATTTCAAGGAACTACCGC
CGAGTCGCTGAGATTTGGTTAGATGAATATAAGGACAAGTTATTTGCCAA
CATGCCACATTTAACAGTGATTCCGGTGGGCAATCTTGCCGAGCAACGAG
ACCTTAAGAACCGCCTCCACTGCAAGCCTTTCAAGTGGTTTTTGGATAAC
CTCGCTACGGATTTCCTCAATCTATATCCCATATTAGATCCCGCAGAATA
CGCTTCGGGAGTGTTACAAAGTATATCATCACCGAAACTCTGCCTGGATC
GCAAAGATCCTAGTCATGGTCAACCCAAATTAGCTCCTTGTAGTTCGGAC
CACGTATTCCCAAGTCCAGAGCAGTATTGGAGCCTAACTAATCATAGGGA
GTTGCGATCTGGATTCTATTGCTTGGAGGTGCGCAATCACGGAGTAAACG
TTCATATATACCAGTGCCATGGTCAGAGTGGAAATCAGTTCTGGTCCTTC
GACTCCAAGACCCATCAGGTGATCTCCGGCCAACAGCAAAACTTCAGACA
TTGCCTGGAGGCCCAGCCGGAATTAAATGCGGTTACTTCGAGTGTCTGTG
ATCCGAAGAACCATAAGCAACAGTGGAAATTTGGATATCTGAATAGCCAA
AGACTGCAACATTTTTGGGATAATGTTAAGACGCAATAGAAGCTTTCTAG
ACCAT
BS11373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 1773 | CG7297-PA | 1..1773 | 17..1789 | 8865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 98..1870 | 17..1789 | 8865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15684749..15685529 | 361..1141 | 3905 | 100 | Plus |
| 3L | 28110227 | 3L | 15685621..15686269 | 1141..1789 | 3245 | 100 | Plus |
| 3L | 28110227 | 3L | 15683969..15684315 | 17..363 | 1735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:35 has no hits.
BS11373.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:16 Download gff for
BS11373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 95..1867 | 17..1789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:47 Download gff for
BS11373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..1870 | 17..1789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:00 Download gff for
BS11373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..1870 | 17..1789 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:00 Download gff for
BS11373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15684752..15685529 | 364..1141 | 100 | -> | Plus |
| 3L | 15683969..15684315 | 17..363 | 100 | -> | Plus |
| 3L | 15685622..15686269 | 1142..1789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:47 Download gff for
BS11373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15677069..15677415 | 17..363 | 100 | -> | Plus |
| arm_3L | 15677852..15678629 | 364..1141 | 100 | -> | Plus |
| arm_3L | 15678722..15679369 | 1142..1789 | 100 | | Plus |
BS11373.pep Sequence
Translation from 16 to 1788
> BS11373.pep
MCLDIWRHKKKVLPLLLLMAIGSIIYYLYTLKLEGERDESATSTTSRLER
DIRDLQAVFESEVIPDLGALGRPARGNWTEEQLEAIAKSQRETGYNAWLS
KRISPERSLYDMRHRSCKKLKYPMEKLPSVSVVITYHNEEASVLLRTLSS
LRSRTPIQLLREVILVDDGSTQADEKLNDFIKIKFLNMVQHRRITTQVGL
MHARVVGAELALADVLVFLDSHVEVTKGWLEPLIAPILEDNRTCTTPIID
TIDFDNFAYRRGKPSRGFFNWEFNYIQLPLLKEEAVAMPAPHKNPIMNGG
LFAIGREWFSELGGYDKGLKIWGAEQFELSLKLWLCGGQILEVPCSRVGH
LFRDGNFQIRYTNKDKNSEKKLISRNYRRVAEIWLDEYKDKLFANMPHLT
VIPVGNLAEQRDLKNRLHCKPFKWFLDNLATDFLNLYPILDPAEYASGVL
QSISSPKLCLDRKDPSHGQPKLAPCSSDHVFPSPEQYWSLTNHRELRSGF
YCLEVRNHGVNVHIYQCHGQSGNQFWSFDSKTHQVISGQQQNFRHCLEAQ
PELNAVTSSVCDPKNHKQQWKFGYLNSQRLQHFWDNVKTQ*
BS11373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-PA | 590 | CG7297-PA | 1..590 | 1..590 | 3150 | 100 | Plus |
| pgant4-PC | 644 | CG31956-PC | 130..644 | 77..588 | 1022 | 40 | Plus |
| pgant4-PB | 644 | CG31956-PB | 130..644 | 77..588 | 1022 | 40 | Plus |
| pgant6-PC | 666 | CG2103-PC | 155..658 | 80..583 | 1022 | 41.9 | Plus |
| pgant6-PB | 666 | CG2103-PB | 155..658 | 80..583 | 1022 | 41.9 | Plus |
